MD07G1026100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006973
Physical Location & Seq
Reverse (-)
2207278 .. 2208873
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1026100.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGGATGTCGTGCACATAAAAGGTCAATCAAAGACTACTTATTGGGGGCGAGTGACGGATTATTTTCACAGCTACAAAACATTTGCAAGTGATCGAGAGGAGAGGTCACTACTACAACGGTGGTCAGCTATTCAACAAGCAACCAAGAAGTTTTGTGAGTATGTTACTCAAGTGGAAGAGAAGCACAAATACGGCGTGAATGGGCAAGATAAGTATTTTTATGCGAAACAGTTATACGAAAAATTGGAAAAGAAAAAATTTCCTTTTGATCATTGTTGGAAGCTGTTGAAGGATGCGCCAAAGTGGTTGGATGATATGCGGAAGCCCAGGAAAAAACCAACAAATAGAGGAAAAGGTACAAGTCTCGCTCCTGAATTCTCTTCTCCTTCTACTTCAGAGAGTTTGATAGGTCTTGTAGAGGACGACGTCCCAAATACTGAATCTGGGAACACAGAGAGGAAGAATGTCCCAAATACTGAATTTCGGAAAAAGGAGAGACTGCAAATAAGGAAGGATGCCCCAGATGGTAATTCTGGGAACAGGGAGAGACTACTTATTGGGAATGATGCCCTGAATAGTGATGTTTGGAACAGGGAGACACCACCGAAAAGGATGGACATCCCAAACACTGGTATTGGGGATATGGACGTCCTAGTTACTGATTTTGGGAATACGGAGAGACCACCCATGAGGAAGGATATCCCGAATACTGATTTTGGGAGCATGGAGAGACCACCAATAAGGACAGACGTCCAAAACACTGATTTGGAGAACATGGATGCCTCAATTACTGATGTTGAGAACATGGAGAGACCGCCATTAAGGAAGGGCATCCCAAATACTGATTCTGGAAACATGGAGAGACCAACGACAATGATGGACGTCCTAGATGCTGATTTTGGGAGCATGGAGAGACCACCAGTAAGGCTGGTTGAGAAACAAAAGATCGAAGAAAACCAAAAGAATGACGATGCAAATAAGCAAGCCGTGGATCTCCTACACATGATGGAGGAATGGAGAGACCAAGTTAATGAAGAGAAAAGGCAATATCGGTTAGAGAAATTAGAGATGCTTAGGGAGAGGCTTGAGATGGATAAGGAGAGGCTTGAGATGGATAAAGAGAGGCTTCGACTCGACCGTGAGGACAAAGAGGAGAGAATAATGTTGATGGATACAAGTATAATGCCTCATCAGCTTCAACAATACTATCATCGACGTCGAATGGAAATTCTTGCTAGAGGAATGGGTGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

419

Amino Acids

49.23

Weight (kDa)

6.12

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 85 - 171 1.2e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 5 cut(s) 429, 651, 753, 885, 1219
AccB7I CCANNNNNTGG 1 cut(s) 629
AciI CCGC 2 cut(s) 319, 815
AclWI GGATC 1 cut(s) 999
AcsI RAATTY 4 cut(s) 257, 374, 479, 1227
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 5 cut(s) 426, 648, 750, 882, 1216
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 3 cut(s) 134, 289, 1199
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 829, 861
AluBI AGCT 4 cut(s) 72, 128, 283, 1195
AluI AGCT 4 cut(s) 72, 128, 283, 1195
Alw21I GWGCWC 1 cut(s) 15
Alw44I GTGCAC 1 cut(s) 11
AlwI GGATC 1 cut(s) 999
ApaLI GTGCAC 1 cut(s) 11
ApoI RAATTY 4 cut(s) 257, 374, 479, 1227
AspLEI GCGC 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 15
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
Bbv12I GWGCWC 1 cut(s) 15
BccI CCATC 7 cut(s) 518, 607, 871, 1000, 1084, 1105, 1162
BceAI ACGGC 2 cut(s) 208, 971
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 1165
BclI TGATCA 1 cut(s) 268
BfaI CTAG 3 cut(s) 653, 887, 1236
BfuI GTATCC 1 cut(s) 1165
Bme1390I CCNGG 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 8 cut(s) 283, 505, 556, 769, 840, 880, 961, 1059
BoxI GACNNNNGTC 1 cut(s) 749
Bpu10I CCTNAGC 1 cut(s) 1073
BpuEI CTTGAG 3 cut(s) 153, 1106, 1127
BsaBI GATNNNNATC 1 cut(s) 617
BsaHI GRCGYC 5 cut(s) 426, 648, 750, 882, 1216
BsaI GGTCTC 6 cut(s) 673, 724, 805, 856, 907, 1014
BsaJI CCNNGG 2 cut(s) 326, 987
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 2 cut(s) 634, 920
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 326, 987
BseGI GGATG 8 cut(s) 10, 298, 316, 520, 618, 618, 784, 831
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 1 cut(s) 629
BseNI ACTGG 2 cut(s) 634, 920
BseRI GAGGAG 2 cut(s) 113, 1166
BseSI GKGCMC 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 1138
BsiEI CGRYCG 1 cut(s) 1138
BsiHKAI GWGCWC 1 cut(s) 15
BslFI GGGAC 2 cut(s) 413, 452
BslI CCNNNNNNNGG 1 cut(s) 629
BsmFI GGGAC 2 cut(s) 413, 452
Bso31I GGTCTC 6 cut(s) 673, 724, 805, 856, 907, 1014
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 4 cut(s) 91, 268, 945, 991
BspACI CCGC 2 cut(s) 319, 815
BspPI GGATC 1 cut(s) 999
BspTNI GGTCTC 6 cut(s) 673, 724, 805, 856, 907, 1014
BsrI ACTGG 2 cut(s) 634, 920
BssECI CCNNGG 2 cut(s) 326, 987
BssMI GATC 4 cut(s) 91, 268, 945, 991
BssNI GRCGYC 5 cut(s) 426, 648, 750, 882, 1216
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 120, 231, 1139
Bst6I CTCTTC 3 cut(s) 171, 385, 1029
BstACI GRCGYC 5 cut(s) 426, 648, 750, 882, 1216
BstC8I GCNNGC 1 cut(s) 984
BstDEI CTNAG 1 cut(s) 1073
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 8 cut(s) 10, 298, 316, 520, 618, 618, 784, 831
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 4 cut(s) 94, 271, 948, 994
BstMBI GATC 4 cut(s) 91, 268, 945, 991
BstMCI CGRYCG 1 cut(s) 1138
BstMWI GCNNNNNNNGC 1 cut(s) 1192
BstNI CCWGG 1 cut(s) 328
BstPAI GACNNNNGTC 1 cut(s) 749
BstSCI CCNGG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
BsuI GTATCC 1 cut(s) 1165
BtgI CCRYGG 1 cut(s) 987
BtsCI GGATG 8 cut(s) 10, 298, 316, 520, 618, 618, 784, 831
BtsIMutI CAGTG 2 cut(s) 627, 759
Cac8I GCNNGC 1 cut(s) 984
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 357
CviAII CATG 7 cut(s) 688, 724, 775, 805, 856, 907, 1003
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 1 cut(s) 1073
DpnI GATC 4 cut(s) 93, 270, 947, 993
DpnII GATC 4 cut(s) 91, 268, 945, 991
Eam1104I CTCTTC 3 cut(s) 171, 385, 1029
EarI CTCTTC 3 cut(s) 171, 385, 1029
Eco31I GGTCTC 6 cut(s) 673, 724, 805, 856, 907, 1014
Eco32I GATATC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 326
EcoRV GATATC 1 cut(s) 700
FaeI CATG 7 cut(s) 691, 727, 778, 808, 859, 910, 1006
FalI AAGNNNNNCTT 2 cut(s) 1110, 1142
FaqI GGGAC 2 cut(s) 413, 452
FatI CATG 7 cut(s) 687, 723, 774, 804, 855, 906, 1002
FbaI TGATCA 1 cut(s) 268
FokI GGATG 8 cut(s) 17, 305, 323, 527, 605, 625, 791, 818
FspBI CTAG 3 cut(s) 653, 887, 1236
GlaI GCGC 1 cut(s) 297
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 5 cut(s) 426, 648, 750, 882, 1216
Hin1II CATG 7 cut(s) 691, 727, 778, 808, 859, 910, 1006
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 3 cut(s) 440, 845, 1131
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 3 cut(s) 397, 486, 1256
Hpy188III TCNNGA 4 cut(s) 95, 371, 703, 849
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 3 cut(s) 428, 1218, 1221
HpyAV CCTTC 5 cut(s) 283, 396, 505, 688, 820
HpyCH4III ACNGT 3 cut(s) 120, 231, 1139
HpyCH4IV ACGT 5 cut(s) 426, 648, 750, 882, 1216
HpyCH4V TGCA 4 cut(s) 13, 86, 502, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 1192
HpyF3I CTNAG 1 cut(s) 1073
HpySE526I ACGT 5 cut(s) 426, 648, 750, 882, 1216
Hsp92I GRCGYC 5 cut(s) 426, 648, 750, 882, 1216
Hsp92II CATG 7 cut(s) 691, 727, 778, 808, 859, 910, 1006
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 91, 268, 945, 991
LmnI GCTCC 3 cut(s) 373, 720, 903
LweI GCATC 8 cut(s) 283, 505, 556, 769, 840, 880, 961, 1059
MaeI CTAG 3 cut(s) 653, 887, 1236
MaeII ACGT 5 cut(s) 426, 648, 750, 882, 1216
MaeIII GTNAC 4 cut(s) 52, 105, 163, 655
MalI GATC 4 cut(s) 93, 270, 947, 993
MboI GATC 4 cut(s) 91, 268, 945, 991
MboII GAAGA 5 cut(s) 188, 372, 472, 962, 1046
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 8 cut(s) 242, 257, 374, 479, 529, 786, 1061, 1227
MlyI GAGTC 1 cut(s) 1125
MmeI TCCRAC 2 cut(s) 257, 288
MseI TTAA 2 cut(s) 821, 1029
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 1192
NdeII GATC 4 cut(s) 91, 268, 945, 991
NlaIII CATG 7 cut(s) 691, 727, 778, 808, 859, 910, 1006
NmuCI GTSAC 2 cut(s) 52, 105
PcsI WCGNNNNNNNCGW 1 cut(s) 1135
PfeI GAWTC 2 cut(s) 440, 845
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 629
PleI GAGTC 1 cut(s) 1125
PpsI GAGTC 1 cut(s) 1125
PshAI GACNNNNGTC 1 cut(s) 749
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 991
PsyI GACNNNGTC 1 cut(s) 425
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 821, 1029
Sau3AI GATC 4 cut(s) 91, 268, 945, 991
SchI GAGTC 1 cut(s) 1125
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 8 cut(s) 283, 505, 556, 769, 840, 880, 961, 1059
SmlI CTYRAG 3 cut(s) 168, 1085, 1106
SmoI CTYRAG 3 cut(s) 168, 1085, 1106
Sse9I AATT 8 cut(s) 242, 257, 374, 479, 529, 786, 1061, 1227
SsiI CCGC 2 cut(s) 319, 815
SspMI CTAG 3 cut(s) 653, 887, 1236
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 120, 231, 1139
TaiI ACGT 5 cut(s) 429, 651, 753, 885, 1219
TaqI TCGA 6 cut(s) 94, 948, 1129, 1134, 1213, 1219
TasI AATT 8 cut(s) 242, 257, 374, 479, 529, 786, 1061, 1227
TfiI GAWTC 2 cut(s) 440, 845
Tru1I TTAA 2 cut(s) 821, 1029
Tru9I TTAA 2 cut(s) 821, 1029
TscAI CASTG 2 cut(s) 634, 766
TseFI GTSAC 2 cut(s) 52, 105
Tsp45I GTSAC 2 cut(s) 52, 105
TspDTI ATGAA 1 cut(s) 1047
TspGWI ACGGA 2 cut(s) 71, 689
TspRI CASTG 2 cut(s) 634, 766
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 11
XapI RAATTY 4 cut(s) 257, 374, 479, 1227
XspI CTAG 3 cut(s) 653, 887, 1236
ZraI GACGTC 5 cut(s) 427, 649, 751, 883, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.