Rorug06G0145300

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006973
Physical Location & Seq
Reverse (-)
20766012 .. 20769251
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0145300.1

Sequence Viewer

Length: 663 bp
ATGGCTCTCTGTAAGCACGTCCTCAAGTCCGCCGCCGATTCTGCCTTTCTTCTCCGGCGAGGCCTCTACTCGTCGTCGTCGGTTTCCACTAACGGAGTCGTCACCCGCGCCTCGGAGCTAGTCAAGTCCGGCGGAAACCGAGCCTATCCGGTGGACACTTTAGCTCTGGTGAGGGGCTTGGAGGCCAAAGGCGTGCCGACGGACCATGCCGAGGCAATCACGTCTGCCATCACCGGAGTTTCCACTGATAGCTTGGAGAATGTGCACCAATTGCAGAGGACTGTGATGCTGCAAGAAGCGAAACTGTCCAAGTTTGAAGCCGAAGTAAAGAGTTTACAGGAACATCATTTTTCCATGTTGACACGTGAAACAGAAAAGCTTCAGAGTATCATAGACAAGATGCGCAGTGAACTGAGGTATGAGTTGGACAAGGTTGCAGCTGGGTCACGCTTGGATTTAAATCTTGAAAAAGGGCGCATGCGTGATGAGTTTAACAATCAGAATGCAGAAACAGCCAATCTGACAAACAAACTTGATCGAGAAATTCAAGCAGTAAAAGCCCTGGTTGAAACGGGAAAATATGAAGTGATTAAATACTGCATAGGAACCCTTGTCTCCATGACAGCAGTTGGTATTGCTGTGCTTCGTATTATGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

220

Amino Acids

24.26

Weight (kDa)

8.48

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC90-like PF07798 51 - 218 2.6e-44 Coiled-coil domain-containing protein 90-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 404
AccII CGCG 1 cut(s) 108
AciI CCGC 4 cut(s) 30, 33, 106, 132
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 1 cut(s) 365
AcvI CACGTG 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 112, 211
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 4 cut(s) 317, 467, 548, 569
AjiI CACGTC 2 cut(s) 19, 222
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 5 cut(s) 118, 164, 252, 379, 440
AluI AGCT 5 cut(s) 118, 164, 252, 379, 440
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 619
Alw44I GTGCAC 1 cut(s) 263
AoxI GGCC 2 cut(s) 61, 183
ApaLI GTGCAC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 289, 437
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 3 cut(s) 110, 405, 477
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 3 cut(s) 94, 181, 223
AvaII GGWCC 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 267
BbrPI CACGTG 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 276, 449
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 33, 290, 438
BlsI GCNGC 3 cut(s) 34, 291, 439
Bme1390I CCNGG 1 cut(s) 563
Bme18I GGWCC 1 cut(s) 202
BmgBI CACGTC 2 cut(s) 19, 222
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 2 cut(s) 276, 390
BpuEI CTTGAG 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 111, 210, 561
BsaWI WCCGGW 2 cut(s) 148, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 211
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 3 cut(s) 111, 210, 561
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 112, 211
BseMII CTCAG 1 cut(s) 404
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 2 cut(s) 276, 449
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 63, 185
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 4 cut(s) 55, 129, 149, 234
BslI CCNNNNNNNGG 2 cut(s) 112, 211
BsmAI GTCTC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 2 cut(s) 63, 185
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 535
BspACI CCGC 4 cut(s) 30, 33, 106, 132
BspANI GGCC 2 cut(s) 63, 185
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 111, 210, 561
BssMI GATC 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 283, 306
BstAPI GCANNNNNTGC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 194, 479
BstDEI CTNAG 1 cut(s) 413
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 3 cut(s) 110, 405, 477
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 4 cut(s) 41, 271, 512, 557
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 276, 449
BsuRI GGCC 2 cut(s) 63, 185
BtrI CACGTC 2 cut(s) 19, 222
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 243, 412
Cac8I GCNNGC 2 cut(s) 194, 479
CfoI GCGC 3 cut(s) 110, 405, 477
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 4 cut(s) 206, 355, 478, 619
DdeI CTNAG 1 cut(s) 413
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
DraI TTTAAA 1 cut(s) 459
EciI GGCGGA 2 cut(s) 19, 147
Eco147I AGGCCT 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 365
Eco72I CACGTG 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 561
FaeI CATG 4 cut(s) 209, 358, 481, 622
FaiI YATR 9 cut(s) 207, 356, 392, 420, 479, 582, 602, 620, 653
FatI CATG 4 cut(s) 205, 354, 477, 618
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 33, 290, 438
Fsp4HI GCNGC 3 cut(s) 33, 290, 438
FspBI CTAG 1 cut(s) 119
FspI TGCGCA 1 cut(s) 404
GlaI GCGC 3 cut(s) 109, 404, 476
GluI GCNGC 3 cut(s) 33, 290, 438
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 2 cut(s) 63, 185
HapII CCGG 4 cut(s) 55, 129, 149, 234
HhaI GCGC 3 cut(s) 110, 405, 477
Hin1II CATG 4 cut(s) 209, 358, 481, 622
Hin6I GCGC 3 cut(s) 108, 403, 475
HinP1I GCGC 3 cut(s) 108, 403, 475
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 2 cut(s) 38, 96
HpaII CCGG 4 cut(s) 55, 129, 149, 234
HphI GGTGA 3 cut(s) 94, 181, 223
Hpy166II GTNNAC 5 cut(s) 154, 265, 335, 360, 410
Hpy188I TCNGA 4 cut(s) 115, 384, 501, 522
Hpy188III TCNNGA 2 cut(s) 464, 539
Hpy8I GTNNAC 5 cut(s) 154, 265, 335, 360, 410
Hpy99I CGWCG 4 cut(s) 76, 79, 82, 202
HpyCH4III ACNGT 2 cut(s) 283, 306
HpyCH4IV ACGT 3 cut(s) 18, 221, 364
HpyCH4V TGCA 6 cut(s) 265, 274, 292, 437, 506, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 271, 512, 557
HpyF3I CTNAG 1 cut(s) 413
HpySE526I ACGT 3 cut(s) 18, 221, 364
Hsp92II CATG 4 cut(s) 209, 358, 481, 622
HspAI GCGC 3 cut(s) 108, 403, 475
Kzo9I GATC 1 cut(s) 535
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 9 cut(s) 68, 142, 152, 162, 247, 323, 426, 548, 575
Lsp1109I GCAGC 2 cut(s) 276, 449
LweI GCATC 2 cut(s) 276, 390
MaeI CTAG 1 cut(s) 119
MaeII ACGT 3 cut(s) 18, 221, 364
MaeIII GTNAC 2 cut(s) 100, 444
MalI GATC 1 cut(s) 537
MboI GATC 1 cut(s) 535
MboII GAAGA 1 cut(s) 41
MfeI CAATTG 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 269, 543, 658
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 9 cut(s) 32, 53, 74, 121, 165, 175, 205, 270, 408
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 458, 492, 591
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 4 cut(s) 55, 129, 149, 234
MspR9I CCNGG 1 cut(s) 563
MunI CAATTG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 4 cut(s) 41, 271, 512, 557
NdeII GATC 1 cut(s) 535
NlaIII CATG 4 cut(s) 209, 358, 481, 622
NlaIV GGNNCC 1 cut(s) 607
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 100, 444
NsbI TGCGCA 1 cut(s) 404
NspI RCATGY 1 cut(s) 481
PaeI GCATGC 1 cut(s) 481
PceI AGGCCT 1 cut(s) 63
PctI GAATGC 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 34, 291, 439
PleI GAGTC 1 cut(s) 104
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 561
PspCI CACGTG 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 440
SaqAI TTAA 3 cut(s) 458, 492, 591
SatI GCNGC 3 cut(s) 33, 290, 438
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 563
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 2 cut(s) 276, 390
SinI GGWCC 1 cut(s) 202
SmiI ATTTAAAT 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SphI GCATGC 1 cut(s) 481
Sse9I AATT 3 cut(s) 269, 543, 658
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 4 cut(s) 30, 33, 106, 132
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 561
SwaI ATTTAAAT 1 cut(s) 459
TaaI ACNGT 2 cut(s) 283, 306
TaiI ACGT 3 cut(s) 21, 224, 367
TaqI TCGA 1 cut(s) 538
TasI AATT 3 cut(s) 269, 543, 658
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 3 cut(s) 458, 492, 591
Tru9I TTAA 3 cut(s) 458, 492, 591
TscAI CASTG 2 cut(s) 250, 412
TseFI GTSAC 2 cut(s) 100, 444
TseI GCWGC 2 cut(s) 289, 437
Tsp45I GTSAC 2 cut(s) 100, 444
TspDTI ATGAA 1 cut(s) 597
TspGWI ACGGA 2 cut(s) 108, 215
TspRI CASTG 2 cut(s) 250, 412
VneI GTGCAC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 543
XceI RCATGY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.