Rw1G019540

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006973
Physical Location & Seq
Reverse (-)
42645952 .. 42648760
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019540.1

Sequence Viewer

Length: 801 bp
ATGGGAGGACCAACTGGAAGATTTTCCAATGGGAAAACTGTTGTTGATGCTTGGTTTTCATCTGTTACCCAACTGAACTTCAGCATTGCACTTGTGGTTATTTTTGTTGACTTCCCATATGGATTCTCAAGCAATGATCAAAAGCTGCATACTTTTTGGGGGAAAATTACTGAGTACTATCATCAGTACAAGTCCTTTAACAGTGATCGTTCACAACCGATGCTGACACAAAGGTGGGGAAAAATACAAAAGGTGGTGAACAAATTTTCAGGATGTTTTGCAGCTATAAATGGAAGACATGAGAGTGGAAAGACTGAACAAGACAAGATTGCAGATGCGAAGAAGATGTTTGAAGCACAAGAAAAGAGAAGGTTCACACTTGATCATGCTTGGATTTTGTTAAGGCACCAACCAAAGTGGATACAACTAATGCAAGAGCTGGACAGCAAGAAAAGTAAGCAAAGATCTAAACCTTCTATAACTAATATCTCATCATCTTCAACTACCGGCACTCACATAGTTATTGAAGAAGAAGAAAACACTTGCTTTCCAGTGGCTAGACCACCGGGTAAGAAGGCTGAGAAAAGAAAAGAAAAAGAAAGAGATGAAAAAAAACTAGAAATTATGAAGGAGAAAATTGAAGTTGACAAGGAGAAACTGCGAGTTAGGAAACTTGAGGCTGAGAATAGGAAAATTGAGGCTGAGATGAGAATTATGTCTATGGATACATCTACTATGAATCCGGAGCAAAGGGCATATTATTCCAAACTTCAAATGAAAATTTTGCAAGGTGATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

266

Amino Acids

30.98

Weight (kDa)

9.57

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 123 - 261 6.9e-22 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 742
AcsI RAATTY 2 cut(s) 263, 780
AcuI CTGAAG 1 cut(s) 64
AfaI GTAC 2 cut(s) 176, 188
AgsI TTSAA 5 cut(s) 353, 501, 527, 641, 773
AleI CACNNNNGTG 1 cut(s) 232
AluBI AGCT 3 cut(s) 145, 284, 439
AluI AGCT 3 cut(s) 145, 284, 439
Aor13HI TCCGGA 1 cut(s) 742
ApeKI GCWGC 2 cut(s) 145, 281
ApoI RAATTY 2 cut(s) 263, 780
Asp700I GAANNNNTTC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 132, 293
BciVI GTATCC 2 cut(s) 414, 718
BclI TGATCA 2 cut(s) 136, 382
BcnI CCSGG 1 cut(s) 567
BfaI CTAG 2 cut(s) 558, 617
BfuI GTATCC 2 cut(s) 414, 718
BglII AGATCT 1 cut(s) 464
BisI GCNGC 2 cut(s) 146, 282
BlsI GCNGC 2 cut(s) 147, 283
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 3 cut(s) 37, 210, 325
BpiI GAAGAC 1 cut(s) 301
BpuEI CTTGAG 2 cut(s) 112, 695
BpuMI CCSGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 742
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 2 cut(s) 19, 551
Bse3DI GCAATG 2 cut(s) 84, 139
BseAI TCCGGA 1 cut(s) 742
BseGI GGATG 1 cut(s) 278
BseMI GCAATG 2 cut(s) 84, 139
BseMII CTCAG 4 cut(s) 162, 570, 672, 693
BseNI ACTGG 2 cut(s) 19, 551
BseXI GCAGC 2 cut(s) 132, 293
BshNI GGYRCC 1 cut(s) 405
BsiSI CCGG 3 cut(s) 507, 566, 743
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 4 cut(s) 136, 205, 382, 464
BspCNI CTCAG 4 cut(s) 163, 571, 673, 694
BspEI TCCGGA 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 84, 139
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 2 cut(s) 19, 551
BssAI RCCGGY 1 cut(s) 506
BssMI GATC 4 cut(s) 136, 205, 382, 464
Bst4CI ACNGT 2 cut(s) 40, 203
BstDEI CTNAG 4 cut(s) 171, 579, 681, 702
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 4 cut(s) 139, 208, 385, 467
BstMBI GATC 4 cut(s) 136, 205, 382, 464
BstSCI CCNGG 1 cut(s) 565
BstV1I GCAGC 2 cut(s) 132, 293
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuI GTATCC 2 cut(s) 414, 718
BtsCI GGATG 1 cut(s) 278
BtsIMutI CAGTG 2 cut(s) 208, 558
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 2 cut(s) 175, 187
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviAII CATG 2 cut(s) 299, 386
CviJI RGCY 7 cut(s) 145, 284, 439, 557, 578, 680, 701
CviKI_1 RGCY 7 cut(s) 145, 284, 439, 557, 578, 680, 701
CviQI GTAC 2 cut(s) 175, 187
DdeI CTNAG 4 cut(s) 171, 579, 681, 702
DpnI GATC 4 cut(s) 138, 207, 384, 466
DpnII GATC 4 cut(s) 136, 205, 382, 464
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 64
FaeI CATG 2 cut(s) 302, 389
FatI CATG 2 cut(s) 298, 385
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 2 cut(s) 136, 382
Fnu4HI GCNGC 2 cut(s) 146, 282
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 146, 282
FspBI CTAG 2 cut(s) 558, 617
GluI GCNGC 2 cut(s) 146, 282
HapII CCGG 3 cut(s) 507, 566, 743
Hin1II CATG 2 cut(s) 302, 389
HincII GTYRAC 2 cut(s) 109, 646
HindII GTYRAC 2 cut(s) 109, 646
HinfI GANTC 2 cut(s) 123, 739
HpaII CCGG 3 cut(s) 507, 566, 743
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 5 cut(s) 109, 212, 259, 375, 646
Hpy188III TCNNGA 2 cut(s) 270, 743
Hpy8I GTNNAC 5 cut(s) 109, 212, 259, 375, 646
HpyAV CCTTC 4 cut(s) 363, 483, 568, 622
HpyCH4III ACNGT 2 cut(s) 40, 203
HpyCH4V TGCA 6 cut(s) 89, 148, 281, 332, 433, 787
HpyF3I CTNAG 4 cut(s) 171, 579, 681, 702
Hsp92II CATG 2 cut(s) 302, 389
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 2 cut(s) 136, 382
Kzo9I GATC 4 cut(s) 136, 205, 382, 464
LmnI GCTCC 1 cut(s) 745
LpnPI CCDG 6 cut(s) 255, 425, 520, 564, 579, 756
Lsp1109I GCAGC 2 cut(s) 132, 293
LweI GCATC 3 cut(s) 37, 210, 325
MaeI CTAG 2 cut(s) 558, 617
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 138, 207, 384, 466
MboI GATC 4 cut(s) 136, 205, 382, 464
MboII GAAGA 8 cut(s) 30, 306, 352, 355, 489, 539, 542, 545
MflI RGATCY 1 cut(s) 464
MluCI AATT 7 cut(s) 165, 263, 621, 636, 693, 711, 780
MnlI CCTC 2 cut(s) 670, 691
MroI TCCGGA 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 22
MseI TTAA 2 cut(s) 198, 401
MslI CAYNNNNRTG 2 cut(s) 232, 303
MspI CCGG 3 cut(s) 507, 566, 743
MspR9I CCNGG 1 cut(s) 567
NciI CCSGG 1 cut(s) 567
NdeI CATATG 1 cut(s) 118
NdeII GATC 4 cut(s) 136, 205, 382, 464
NlaIII CATG 2 cut(s) 302, 389
NlaIV GGNNCC 1 cut(s) 407
OliI CACNNNNGTG 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 123, 739
PkrI GCNGC 2 cut(s) 147, 283
PspN4I GGNNCC 1 cut(s) 407
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 2 cut(s) 176, 188
RsaNI GTAC 2 cut(s) 175, 187
RseI CAYNNNNRTG 2 cut(s) 232, 303
SaqAI TTAA 2 cut(s) 198, 401
SatI GCNGC 2 cut(s) 146, 282
Sau3AI GATC 4 cut(s) 136, 205, 382, 464
Sau96I GGNCC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 567
SetI ASST 8 cut(s) 147, 236, 255, 286, 374, 441, 475, 793
SfaNI GCATC 3 cut(s) 37, 210, 325
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 232, 303
SmlI CTYRAG 2 cut(s) 127, 674
SmoI CTYRAG 2 cut(s) 127, 674
Sse9I AATT 7 cut(s) 165, 263, 621, 636, 693, 711, 780
SspMI CTAG 2 cut(s) 558, 617
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 2 cut(s) 40, 203
TasI AATT 7 cut(s) 165, 263, 621, 636, 693, 711, 780
TatI WGTACW 2 cut(s) 174, 186
TfiI GAWTC 2 cut(s) 123, 739
Tru1I TTAA 2 cut(s) 198, 401
Tru9I TTAA 2 cut(s) 198, 401
TscAI CASTG 2 cut(s) 208, 558
TseI GCWGC 2 cut(s) 145, 281
TspDTI ATGAA 5 cut(s) 48, 621, 641, 752, 791
TspRI CASTG 2 cut(s) 208, 558
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 2 cut(s) 263, 780
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 2 cut(s) 558, 617
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.