FvH4_4g19882

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006973
Physical Location & Seq
Reverse (-)
23379392 .. 23380096
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19882.t1

Sequence Viewer

Length: 498 bp
ATGCTGAGCCAACGATGGAGAAAAATACAAAGGCTGGTGAACAAGTATTCAGGCTGTGTAGCTGCTATAAATTCATTAAATGAAAGCGGCAAGACTGAACAAGACAGGATTGCAGATACAAAAAAAATGTTTGAAGCACAAGAAGAGTCTATAGGCAGTGATATAGACATTGAGGAAGAAACTAACATTTGCAATCCAGTAGCTAGACCACCAGGTAAGAAAACTGAGAAAAGAAAGCTGAAAGAAACAAGTGATCAGTTGGTTTTAATTGAAAAACTGCATCTAGAGAAAAAAGAAAGAGATGAAAAGAAACTAACTATTATGAAGGAGAAAGTTGAAGTTGATAAAGAGAAATTGAGGGTTAGAAAACTTAAGGTTGATAATAGGAAGTTTGAAGCAGAGATGAGAATCATGTCTATGGATACTTCTAAGATGAACCATGAGGAAAGGACATACTATTCCAAACTACAAATGAAGATTTTGCAGGGTGACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

166

Amino Acids

19.46

Weight (kDa)

9.19

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 36 - 160 1e-11 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 70
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 4 cut(s) 134, 272, 338, 395
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 62, 203, 238
AluI AGCT 3 cut(s) 62, 203, 238
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 49
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 253
BfaI CTAG 3 cut(s) 204, 284, 496
BfmI CTRYAG 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 2 cut(s) 63, 88
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 64, 89
Bme1390I CCNGG 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 289
Bpu1102I GCTNAGC 1 cut(s) 5
BsaBI GATNNNNATC 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 407
BseBI CCWGG 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 407
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 253
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 217
BspTI CTTAAG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 197
BssMI GATC 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 371
BstDEI CTNAG 3 cut(s) 5, 225, 429
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 49
BsuI GTATCC 1 cut(s) 415
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 211
CviAII CATG 2 cut(s) 412, 440
CviJI RGCY 6 cut(s) 9, 34, 54, 62, 203, 238
CviKI_1 RGCY 6 cut(s) 9, 34, 54, 62, 203, 238
DdeI CTNAG 3 cut(s) 5, 225, 429
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 415, 443
FaiI YATR 8 cut(s) 68, 152, 164, 323, 413, 419, 441, 454
FatI CATG 2 cut(s) 411, 439
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 63, 88
Fsp4HI GCNGC 2 cut(s) 63, 88
FspBI CTAG 3 cut(s) 204, 284, 496
GluI GCNGC 2 cut(s) 63, 88
Hin1II CATG 2 cut(s) 415, 443
HinfI GANTC 2 cut(s) 146, 408
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 113, 192, 280, 484
HpyF3I CTNAG 3 cut(s) 5, 225, 429
Hsp92II CATG 2 cut(s) 415, 443
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 7 cut(s) 20, 36, 91, 198, 210, 225, 470
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 289
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 3 cut(s) 204, 284, 496
MaeIII GTNAC 1 cut(s) 488
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 155, 188, 487
MluCI AATT 3 cut(s) 70, 267, 353
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 3 cut(s) 166, 351, 436
MseI TTAA 3 cut(s) 77, 266, 372
MslI CAYNNNNRTG 1 cut(s) 416
MspCI CTTAAG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 415, 443
NmuCI GTSAC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 408
PkrI GCNGC 2 cut(s) 64, 89
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 77, 266, 372
SatI GCNGC 2 cut(s) 63, 88
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 213
SetI ASST 5 cut(s) 64, 205, 217, 240, 378
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 70, 267, 353
SsiI CCGC 1 cut(s) 87
SspMI CTAG 3 cut(s) 204, 284, 496
StyD4I CCNGG 1 cut(s) 211
TasI AATT 3 cut(s) 70, 267, 353
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 3 cut(s) 77, 266, 372
Tru9I TTAA 3 cut(s) 77, 266, 372
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 6 cut(s) 63, 96, 318, 338, 449, 488
TspRI CASTG 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 371
XapI RAATTY 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 283
XspI CTAG 3 cut(s) 204, 284, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.