Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008107

Physical Location & Seq

Genomic Coordinates Reverse (-)

15789525 .. 15794067

Gene Structure 4543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAGGCAGGCCGGTGTTCCTGCGGATTTTTTCACATTTACAAGTATCTTAAGAGCAGCAGGAACTGTTTCAGCACTTGTGGAGGGAAAGAAAATCCATGCTCTCATCTTCAAGAGTGGACATGCTTCAAATTTATGTGTTCAGAATGGGCTTGTTTCAATGTATGGAAGATGCGGTGCCATCCATGACGCGAAATGGGCATTTACTTTGATGAAAGAACATGATGTGATCTCCTGGAATTCATTATTATCAGGTTATGCACATCATGGATTTGGGAAGGAGACTGTTGAACTGTTTGAACAAATGAGAAGAACAGAGGTCAAACCAGATAATACGACCTTCCTGATTGTACTAACGGCCTGTAGCCATGCTGGTTTGTTGGACAAAGGGCTTGAGTATTTCAATCTTATGAGCAATGACGATTTCCTTACACCGCCCAAGATGGAGCACTACGCTACCGTTGTTGATCTTTTTGGTCGGGCTGGAAACCTTCATGAAGCGGAAGCCTTTGTCGGTAGCATGCCAATAGAGCCAGGTGCCTCAGTATACAGAGCTCTACTTAGTGCTTCCCAAGTTCATGGAAACAAGGAACTTGCTTTTCGTTCTGCAACAACGCTTCAACAACTGTGCCCAAATGATCATGGCTTGTTGTTTTGTTCTCCAGAGTTGGGTGTCAAAGAATGTTATGGCCGGAATTTTGTTGATGGGTTCTTCAGCCAGCTCTATGAGCAGCTTGGCATTGAGATTTTCGGACTGGGATTTGTCACATCCTTACTTTTCGTATTCTTTGTTGGTGTCTTTGTTTCCTCATGGATGGGTGCCCCTGTTTTCTCTCCTGGAGAATGGATTATAAAGAAAATGCCTTTTGTTAAGCATATCTACTCCACCTCCAAACAAATTAGTGCCACAATTTCTCGAGACCAAAATACAACAGCTTTTAAAGAGGTACCAATTATCCGTCACCCATGTGTTGGCGAATATGCTTTTGGGTTTATCACATCAACCGTTACCCTTCAGAGAGATAACGAAGATGAAGAGTTGTGTGGTGTTTTTGTCCCAACAAATCATATATATATAGGTGATATATTTCTTGTTAACTCCATGGATATCATAAGACCAAATCTGTCTATCCGAGAAGGCATAGGTATGTTTAATCTTTTGTCAGTTTACTTGTATTGCGAACATATGCATCTTTGTTTATTGATTTTATTTGAGGGAAGCGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

410

Amino Acids

45.54

Weight (kDa)

5.72

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	2.5e-11	PPR repeat family
PPR	PF01535	77 - 104	2.7e-06	PPR repeat
DUF502	PF04367	256 - 357	1.4e-24	Protein of unknown function (DUF502)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008107)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23940 FvH4_1g23941
malus_domestica	MD11G1095500.v1.1
prunus_persica	Prupe.6G071000_v2.0.a1
pyrus_communis	pycom11g08090
rosa_chinensis	RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321
rosa_laevigata	RLG00000018506 RLG00000018509 RLG00000018742
rosa_multiflora	Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002
rosa_roxburghii	Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300
rosa_samantha	Rh2AG282900 Rh2BG294100 Rh3DG236700
rosa_wichuraiana	Rw2G022590 Rw2G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
Acc65I	GGTACC	1 cut(s)	946
AccB1I	GGYRCC	4 cut(s)	176, 536, 818, 946
AccB7I	CCANNNNNTGG	1 cut(s)	971
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	23, 174, 434, 500
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	3 cut(s)	130, 238, 694
AcuI	CTGAAG	2 cut(s)	697, 998
AfaI	GTAC	2 cut(s)	351, 948
AfiI	CCNNNNNNNGG	2 cut(s)	668, 971
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	112, 129, 159, 290, 299, 403, 620
AjnI	CCWGG	3 cut(s)	233, 532, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	969, 1001
AleI	CACNNNNGTG	1 cut(s)	966
AluBI	AGCT	4 cut(s)	554, 721, 733, 935
AluI	AGCT	4 cut(s)	554, 721, 733, 935
Alw21I	GWGCWC	2 cut(s)	450, 556
Alw26I	GTCTC	2 cut(s)	275, 912
AlwNI	CAGNNNCTG	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	3 cut(s)	9, 357, 688
ApeKI	GCWGC	2 cut(s)	56, 730
ApoI	RAATTY	3 cut(s)	130, 238, 694
Asp700I	GAANNNNTTC	1 cut(s)	67
Asp718I	GGTACC	1 cut(s)	946
AsuHPI	GGTGA	2 cut(s)	953, 1091
AvaI	CYCGRG	1 cut(s)	915
BaeGI	GKGCMC	2 cut(s)	632, 823
BanI	GGYRCC	4 cut(s)	176, 536, 818, 946
BanII	GRGCYC	1 cut(s)	556
Bbv12I	GWGCWC	2 cut(s)	450, 556
BbvI	GCAGC	2 cut(s)	68, 742
BccI	CCATC	4 cut(s)	188, 436, 698, 808
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	3 cut(s)	235, 534, 837
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	275, 912
BfmI	CTRYAG	1 cut(s)	361
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	2 cut(s)	57, 731
BlsI	GCNGC	2 cut(s)	58, 732
Bme1390I	CCNGG	3 cut(s)	235, 534, 837
BmeT110I	CYCGRG	1 cut(s)	915
BmiI	GGNNCC	4 cut(s)	178, 538, 820, 948
BmrFI	CCNGG	3 cut(s)	235, 534, 837
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	2 cut(s)	161, 1198
BmuI	ACTGGG	1 cut(s)	764
BpmI	CTGGAG	2 cut(s)	645, 858
BpuEI	CTTGAG	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	1 cut(s)	1101
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 971
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	759
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	235, 534, 837
BseDI	CCNNGG	1 cut(s)	1101
BseGI	GGATG	3 cut(s)	180, 767, 819
BseLI	CCNNNNNNNGG	2 cut(s)	668, 971
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	759
BseSI	GKGCMC	2 cut(s)	632, 823
BseXI	GCAGC	2 cut(s)	68, 742
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	11, 359, 690
BshNI	GGYRCC	4 cut(s)	176, 536, 818, 946
BsiHKAI	GWGCWC	2 cut(s)	450, 556
BsiHKCI	CYCGRG	1 cut(s)	915
BsiSI	CCGG	2 cut(s)	12, 691
BslFI	GGGAC	1 cut(s)	1040
BslI	CCNNNNNNNGG	2 cut(s)	668, 971
BsmAI	GTCTC	2 cut(s)	275, 912
BsmFI	GGGAC	1 cut(s)	1040
BsnI	GGCC	3 cut(s)	11, 359, 690
Bso31I	GGTCTC	1 cut(s)	912
BsoBI	CYCGRG	1 cut(s)	915
Bsp1286I	GDGCHC	4 cut(s)	450, 556, 632, 823
Bsp143I	GATC	3 cut(s)	228, 466, 637
Bsp19I	CCATGG	1 cut(s)	1101
BspACI	CCGC	4 cut(s)	23, 174, 434, 500
BspANI	GGCC	3 cut(s)	11, 359, 690
BspCNI	CTCAG	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	4 cut(s)	178, 538, 820, 948
BspT107I	GGYRCC	4 cut(s)	176, 536, 818, 946
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	759
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	1101
BssMI	GATC	3 cut(s)	228, 466, 637
BssNAI	GTATAC	1 cut(s)	547
BssT1I	CCWWGG	1 cut(s)	1101
Bst1107I	GTATAC	1 cut(s)	547
Bst2UI	CCWGG	3 cut(s)	235, 534, 837
Bst4CI	ACNGT	6 cut(s)	67, 286, 294, 460, 627, 1006
Bst6I	CTCTTC	1 cut(s)	1029
BstAFI	CTTAAG	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	9, 521, 719
BstDEI	CTNAG	2 cut(s)	541, 560
BstDSI	CCRYGG	1 cut(s)	1101
BstF5I	GGATG	3 cut(s)	180, 767, 819
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	3 cut(s)	231, 469, 640
BstMAI	GTCTC	2 cut(s)	275, 912
BstMBI	GATC	3 cut(s)	228, 466, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 529, 727
BstNI	CCWGG	3 cut(s)	235, 534, 837
BstNSI	RCATGY	2 cut(s)	125, 523
BstSCI	CCNGG	3 cut(s)	233, 532, 835
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	2 cut(s)	632, 823
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	68, 742
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstZ17I	GTATAC	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	11, 359, 690
BtgI	CCRYGG	1 cut(s)	1101
BtsCI	GGATG	3 cut(s)	180, 767, 819
Cac8I	GCNNGC	3 cut(s)	9, 521, 719
CaiI	CAGNNNCTG	1 cut(s)	65
CciI	TCATGA	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	11
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	350, 947
CviQI	GTAC	2 cut(s)	350, 947
DdeI	CTNAG	2 cut(s)	541, 560
DpnI	GATC	3 cut(s)	230, 468, 639
DpnII	GATC	3 cut(s)	228, 466, 637
DraI	TTTAAA	1 cut(s)	940
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	1101
Eco24I	GRGCYC	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	912
Eco32I	GATATC	1 cut(s)	1108
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	2 cut(s)	697, 998
Eco88I	CYCGRG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	233, 532, 835
EcoRV	GATATC	1 cut(s)	1108
EcoT14I	CCWWGG	1 cut(s)	1101
EcoT22I	ATGCAT	1 cut(s)	1191
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	1101
FaqI	GGGAC	1 cut(s)	1040
FauNDI	CATATG	1 cut(s)	1185
FbaI	TGATCA	1 cut(s)	637
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	57, 731
FokI	GGATG	3 cut(s)	167, 754, 826
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	2 cut(s)	57, 731
GluI	GCNGC	2 cut(s)	57, 731
GsuI	CTGGAG	2 cut(s)	645, 858
HaeIII	GGCC	3 cut(s)	11, 359, 690
HapII	CCGG	2 cut(s)	12, 691
HgaI	GACGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	1096
HindII	GTYRAC	1 cut(s)	1096
HpaI	GTTAAC	1 cut(s)	1096
HpaII	CCGG	2 cut(s)	12, 691
HphI	GGTGA	2 cut(s)	953, 1091
Hpy166II	GTNNAC	4 cut(s)	119, 547, 1096, 1168
Hpy188I	TCNGA	4 cut(s)	144, 752, 1017, 1133
Hpy188III	TCNNGA	6 cut(s)	112, 343, 494, 662, 915, 917
Hpy8I	GTNNAC	4 cut(s)	119, 547, 1096, 1168
HpyAV	CCTTC	5 cut(s)	271, 349, 500, 1022, 1130
HpyCH4III	ACNGT	6 cut(s)	67, 286, 294, 460, 627, 1006
HpyCH4V	TGCA	3 cut(s)	260, 608, 1189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 529, 727
HpyF3I	CTNAG	2 cut(s)	541, 560
KpnI	GGTACC	1 cut(s)	950
Ksp22I	TGATCA	1 cut(s)	637
KspAI	GTTAAC	1 cut(s)	1096
Kzo9I	GATC	3 cut(s)	228, 466, 637
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	68, 742
LweI	GCATC	2 cut(s)	161, 1198
MaeIII	GTNAC	3 cut(s)	763, 959, 1006
MalI	GATC	3 cut(s)	230, 468, 639
MboI	GATC	3 cut(s)	228, 466, 637
MboII	GAAGA	6 cut(s)	100, 180, 321, 703, 1040, 1046
MhlI	GDGCHC	4 cut(s)	450, 556, 632, 823
MluCI	AATT	6 cut(s)	130, 238, 694, 897, 909, 951
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	76, 310, 550, 817, 898, 937, 1207
Mph1103I	ATGCAT	1 cut(s)	1191
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	5 cut(s)	50, 870, 939, 1095, 1152
MslI	CAYNNNNRTG	2 cut(s)	966, 1145
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	2 cut(s)	12, 691
MspR9I	CCNGG	3 cut(s)	235, 534, 837
MvaI	CCWGG	3 cut(s)	235, 534, 837
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	197, 529, 727
NcoI	CCATGG	1 cut(s)	1101
NdeI	CATATG	1 cut(s)	1185
NdeII	GATC	3 cut(s)	228, 466, 637
NlaIV	GGNNCC	4 cut(s)	178, 538, 820, 948
NmuCI	GTSAC	2 cut(s)	763, 959
NsiI	ATGCAT	1 cut(s)	1191
NspI	RCATGY	2 cut(s)	125, 523
OliI	CACNNNNGTG	1 cut(s)	966
PaeI	GCATGC	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	915
PagI	TCATGA	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	971
PfoI	TCCNGGA	2 cut(s)	233, 835
PkrI	GCNGC	2 cut(s)	58, 732
PsiI	TTATAA	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	3 cut(s)	233, 532, 835
PspGI	CCWGG	3 cut(s)	233, 532, 835
PspN4I	GGNNCC	4 cut(s)	178, 538, 820, 948
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	351, 948
RsaNI	GTAC	2 cut(s)	350, 947
RseI	CAYNNNNRTG	2 cut(s)	966, 1145
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	5 cut(s)	50, 870, 939, 1095, 1152
SatI	GCNGC	2 cut(s)	57, 731
Sau3AI	GATC	3 cut(s)	228, 466, 637
ScrFI	CCNGG	3 cut(s)	235, 534, 837
SduI	GDGCHC	4 cut(s)	450, 556, 632, 823
SfaNI	GCATC	2 cut(s)	161, 1198
SfcI	CTRYAG	1 cut(s)	361
Sfr274I	CTCGAG	1 cut(s)	915
SlaI	CTCGAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	2 cut(s)	966, 1145
SmlI	CTYRAG	3 cut(s)	49, 392, 915
SmoI	CTYRAG	3 cut(s)	49, 392, 915
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	6 cut(s)	130, 238, 694, 897, 909, 951
SsiI	CCGC	4 cut(s)	23, 174, 434, 500
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	3 cut(s)	233, 532, 835
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	6 cut(s)	67, 286, 294, 460, 627, 1006
TaqI	TCGA	1 cut(s)	916
TasI	AATT	6 cut(s)	130, 238, 694, 897, 909, 951
TatI	WGTACW	1 cut(s)	349
Tru1I	TTAA	5 cut(s)	50, 870, 939, 1095, 1152
Tru9I	TTAA	5 cut(s)	50, 870, 939, 1095, 1152
TseFI	GTSAC	2 cut(s)	763, 959
TseI	GCWGC	2 cut(s)	56, 730
Tsp45I	GTSAC	2 cut(s)	763, 959
TspDTI	ATGAA	6 cut(s)	227, 231, 482, 510, 566, 1047
TspGWI	ACGGA	1 cut(s)	947
Van91I	CCANNNNNTGG	1 cut(s)	971
Vha464I	CTTAAG	1 cut(s)	49
XapI	RAATTY	3 cut(s)	130, 238, 694
XceI	RCATGY	2 cut(s)	125, 523
XhoI	CTCGAG	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.