Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006369.1

Orthogroup ID

OG0008107

Physical Location & Seq

Genomic Coordinates Forward (+)

1991 .. 3128

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006369.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggttactgggtgtgcgcagagtgggcagtctgatgaggcaatgactttggtgaaagaaatgctgctgttgggtctcaagccgaattatgttacttataatagtttgttgagttcatttgctagcatggacttttgggattgttgcagacaaatccattgccggatagtgaaagaagggtttgattccaacgtgtatactgtggttacccttttgaccgtatattcagagtctaatagtagctcggaggatttccgtgcgctttgctcgtgtgtttcagtgtgggatcaaatctcgtggaatgcagtaattgcgggtttttgtaatattgggagcagtgaggaagctctgaagtgtttctctgaaatgaggcaggccggtgttgctgtggattttttctcatttgcaagcattttaagagcagcaggaaccctttcagcacttgtagagggaaagaaaatccatgctctcatcttcaagagtggacaactggacatgcttcaaatttatgtgttcagaatgggcttgtttcaatgttatgcacatcatggatttgggaaggagactgttgaattgtgtgagcaaatgagaagaacagagggcaaaccagataataccatcttcctgattgtactaactgcctgtagccatgttggtttattggacaaagggctcgagtatttcaatctaatgagaaatgatgatttgcctgaaccacccaaggtggagcattatgctaccatcgttgatctttttggtcgggctggaaaccttcacaaagcggaagccttcgtcaataccatgccaatagagccgggtgcctcagtatacaaagctctacttacaggagtatggaagctcatgtatgatagaggaataagaaaaactcctggttatagttggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.7

Weight (kDa)

5.83

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008107)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23940 FvH4_1g23941
malus_domestica	MD11G1095500.v1.1
prunus_persica	Prupe.6G071000_v2.0.a1
pyrus_communis	pycom11g08090
rosa_chinensis	RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321
rosa_laevigata	RLG00000018506 RLG00000018509 RLG00000018742
rosa_multiflora	Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002
rosa_roxburghii	Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300
rosa_samantha	Rh2AG282900 Rh2BG294100 Rh3DG236700
rosa_wichuraiana	Rw2G022590 Rw2G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
Acc16I	TGCGCA	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	818
AccI	GTMKAC	2 cut(s)	197, 828
AciI	CCGC	2 cut(s)	314, 782
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	633
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	478, 503, 533, 572, 685
AjnI	CCWGG	1 cut(s)	889
AluBI	AGCT	4 cut(s)	243, 347, 836, 859
AluI	AGCT	4 cut(s)	243, 347, 836, 859
Alw26I	GTCTC	2 cut(s)	80, 557
AlwI	GGATC	1 cut(s)	294
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	64, 422
ApoI	RAATTY	1 cut(s)	504
Asp700I	GAANNNNTTC	2 cut(s)	356, 433
AspLEI	GCGC	2 cut(s)	19, 262
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	675
BauI	CACGAG	2 cut(s)	268, 295
BbvI	GCAGC	2 cut(s)	51, 434
BccI	CCATC	2 cut(s)	626, 749
BciT130I	CCWGG	1 cut(s)	891
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	2 cut(s)	80, 557
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	643
BisI	GCNGC	2 cut(s)	65, 423
BlsI	GCNGC	2 cut(s)	66, 424
Bme1390I	CCNGG	2 cut(s)	816, 891
BmeT110I	CYCGRG	1 cut(s)	674
BmiI	GGNNCC	2 cut(s)	430, 820
BmrFI	CCNGG	2 cut(s)	816, 891
BmrI	ACTGGG	1 cut(s)	18
BmtI	GCTAGC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	720
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	13, 495
Bse3DI	GCAATG	2 cut(s)	48, 157
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	1 cut(s)	720
BseMI	GCAATG	2 cut(s)	48, 157
BseMII	CTCAG	1 cut(s)	837
BseNI	ACTGG	2 cut(s)	13, 495
BseXI	GCAGC	2 cut(s)	51, 434
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	818
BsiHKCI	CYCGRG	1 cut(s)	674
BsiSI	CCGG	3 cut(s)	163, 378, 815
BsmAI	GTCTC	2 cut(s)	80, 557
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	286, 748
BspACI	CCGC	2 cut(s)	314, 782
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	836
BspLI	GGNNCC	2 cut(s)	430, 820
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	48, 157
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	13, 495
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	2 cut(s)	286, 748
BssNAI	GTATAC	2 cut(s)	198, 829
BssSI	CACGAG	2 cut(s)	268, 295
BssT1I	CCWWGG	1 cut(s)	720
Bst1107I	GTATAC	2 cut(s)	198, 829
Bst2BI	CACGAG	2 cut(s)	268, 295
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	3 cut(s)	202, 220, 568
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	124, 375, 409
BstDEI	CTNAG	1 cut(s)	823
BstEII	GGTNACC	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	19, 262
BstKTI	GATC	2 cut(s)	289, 751
BstMAI	GTCTC	2 cut(s)	80, 557
BstMBI	GATC	2 cut(s)	286, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 311, 383, 811
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	1 cut(s)	499
BstPI	GGTNACC	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	814, 889
BstSFI	CTRYAG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	51, 434
BstZ17I	GTATAC	2 cut(s)	198, 829
BsuRI	GGCC	1 cut(s)	377
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	2 cut(s)	285, 343
Cac8I	GCNNGC	3 cut(s)	124, 375, 409
CfoI	GCGC	2 cut(s)	19, 262
Cfr10I	RCCGGY	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	632
CspCI	CAANNNNNGTGG	2 cut(s)	278, 313
CviAII	CATG	7 cut(s)	127, 464, 496, 548, 650, 802, 862
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	1 cut(s)	823
DpnI	GATC	2 cut(s)	288, 750
DpnII	GATC	2 cut(s)	286, 748
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	675
Eco31I	GGTCTC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	371
Eco88I	CYCGRG	1 cut(s)	674
Eco91I	GGTNACC	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	7 cut(s)	130, 467, 499, 551, 653, 805, 865
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FatI	CATG	7 cut(s)	126, 463, 495, 547, 649, 801, 861
FauI	CCCGC	1 cut(s)	307
FblI	GTMKAC	2 cut(s)	197, 828
Fnu4HI	GCNGC	2 cut(s)	65, 423
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	2 cut(s)	65, 423
FspBI	CTAG	1 cut(s)	123
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	2 cut(s)	18, 261
GluI	GCNGC	2 cut(s)	65, 423
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	3 cut(s)	163, 378, 815
HhaI	GCGC	2 cut(s)	19, 262
Hin1II	CATG	7 cut(s)	130, 467, 499, 551, 653, 805, 865
Hin6I	GCGC	2 cut(s)	17, 260
HinP1I	GCGC	2 cut(s)	17, 260
HinfI	GANTC	2 cut(s)	185, 230
HpaII	CCGG	3 cut(s)	163, 378, 815
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	3 cut(s)	198, 485, 829
Hpy188I	TCNGA	6 cut(s)	34, 229, 247, 351, 364, 518
Hpy188III	TCNNGA	2 cut(s)	478, 625
Hpy8I	GTNNAC	3 cut(s)	198, 485, 829
HpyAV	CCTTC	4 cut(s)	170, 553, 782, 799
HpyCH4III	ACNGT	3 cut(s)	202, 220, 568
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	147, 305, 407, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 311, 383, 811
HpyF3I	CTNAG	1 cut(s)	823
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	7 cut(s)	130, 467, 499, 551, 653, 805, 865
HspAI	GCGC	2 cut(s)	17, 260
Kzo9I	GATC	2 cut(s)	286, 748
LmnI	GCTCC	2 cut(s)	333, 727
Lsp1109I	GCAGC	2 cut(s)	51, 434
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	4, 91, 205
MalI	GATC	2 cut(s)	288, 750
MboI	GATC	2 cut(s)	286, 748
MboII	GAAGA	3 cut(s)	466, 603, 613
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	4 cut(s)	85, 309, 504, 572
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	213, 881
MnlI	CCTC	8 cut(s)	31, 241, 334, 363, 442, 592, 832, 866
MroXI	GAANNNNTTC	2 cut(s)	356, 433
MseI	TTAA	1 cut(s)	416
MspI	CCGG	3 cut(s)	163, 378, 815
MspR9I	CCNGG	2 cut(s)	816, 891
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	891
MwoI	GCNNNNNNNGC	4 cut(s)	25, 311, 383, 811
NciI	CCSGG	1 cut(s)	816
NdeII	GATC	2 cut(s)	286, 748
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	7 cut(s)	130, 467, 499, 551, 653, 805, 865
NlaIV	GGNNCC	2 cut(s)	430, 820
NsbI	TGCGCA	1 cut(s)	18
NspI	RCATGY	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	674
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	2 cut(s)	356, 433
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	66, 424
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	889
PspEI	GGTNACC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	2 cut(s)	430, 820
PspXI	VCTCGAGB	1 cut(s)	674
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	2 cut(s)	65, 423
Sau3AI	GATC	2 cut(s)	286, 748
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	816, 891
SduI	GDGCHC	1 cut(s)	675
SetI	ASST	7 cut(s)	195, 245, 349, 726, 774, 838, 861
SfcI	CTRYAG	1 cut(s)	643
Sfr274I	CTCGAG	1 cut(s)	674
SlaI	CTCGAG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	77, 674
SmoI	CTYRAG	2 cut(s)	77, 674
Sse9I	AATT	4 cut(s)	85, 309, 504, 572
SsiI	CCGC	2 cut(s)	314, 782
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	814, 889
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	3 cut(s)	202, 220, 568
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	675
TasI	AATT	4 cut(s)	85, 309, 504, 572
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	2 cut(s)	285, 343
TseI	GCWGC	2 cut(s)	64, 422
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	285, 343
XapI	RAATTY	1 cut(s)	504
XceI	RCATGY	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	674
XmiI	GTMKAC	2 cut(s)	197, 828
XmnI	GAANNNNTTC	2 cut(s)	356, 433
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.