Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008107

Physical Location & Seq

Genomic Coordinates Reverse (-)

4855185 .. 4857482

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGACAATGATCCAGAAGCTAGCAAAGCCTTTTGGTTTGGAGCTGTTGGCTCAGTTGCAACAAGGAGGGTCTTCACCCACCCCTCAAACCCTCAACAAAATCATATCCTCTTGCGCAACATCGACTTCTTTGGACTTGGGTATTAGGCTTCACGCAGTTGTTATCAAGTTGGGTTTTTGTTCTAATATCTATATATGCAGTGCTCTCGTTGATATGTTTGGAAAATGTGGCTCGTTGGCGAATGCCCAGAAACAGTTTGATGAAATGTCTGACAGAAATGTAGTTACTTGGAATTCTTTGATTTCTGGTTATTTGCAAGCTGAGTTGCCGAAAAGGGCAATTGGGTTGTTCCTGGAGATGTTAAAAGTGGGGGTAGTGCCAACGCCGTTCAGTCTGTCGGGGGCCTTGGTGGGTTGCTCACAATTAGAAGCAGAAGAGCTTGGTGCTCAGGTTCATGGTTTGAGCCTGAAAACAGGGCTTTGCTATAATGTTGTTGTGGGAACAGGATTGATAGATATGTATTCAAAGTGTTGTAGTGTTAATGATTCAAGGCGGGTGTTTAATCAAATGCCAGAAAGGAATGTTATAACTTGGACTTCCATGGTTACTGGCTATGCACAGAATGGACAATCTGATGAGGCGATGATTTTAGCAAGGGAAATGCTGCGGTTGGGTTTGAAACCAAATTATGTAACTTATAATAGTTTGTTGAGCTCATTTTCTAGCCCAGACTTTTGGGATCATTGCAGGCAAATTCATTGCCGGATAATGAAAGAAGGTTTTGAGTTTAACGTGTATATAGTCGTTACCCTTCTGACCATATATTCAGATTGTAGCAATAGCTTGGAGGACTTTCAAAAGCTTTGCTCATGTGTTGCAATATGGGATCAAATCTCATGGAATGCAGTAATTGCTGGTTTTTCTAATATTGGAAGTTGTGAGGAAGCTTTGAAATGTTTCTCTGACATGAGGCAGGCCCGCATTGCTACAAACTTCTTCACATTTGCTAGCATTTTAAGAGCAGTAGGAACTCTTTCAGACCTTGAAGCGGGAAAAAAAATCCATGCTCTCATTTTCAAGAGTGGGCAAGCTTCAAATTTTTGTGTTCAGAATGGGCTTGTTTCCATGTATGCAAGATGCGGTGCCATCCATGATTCGAAGTGGGTGTTTACTTTGATGAACGAACATGATGTGGTCTCCTGGAATTCATTATTAGCAGGTTATGCTCATCATGGATTTGGATTGGAGACTGTTGAATTGTTTGAACAAATGAGAAGAGCAGGGGTCAAACCAGATAATACCACCTTCCTCATTGTACTAACTGCTTGTAGCCATGTTGGTTTAGTGCACCAAGGACTTATGTATTTCGATTTAATGAGAAATGATGATTTGCTTGAACCCCCCAGAATGGAGCATTATGCTACGGTTGTTGATCTTTTTGGTCGAGCTGGAAATCTTCATGAAGCACAAGCCTTCGTTGATAGCATGCCAATAGAGCCAGGACCCTCCGTATACAAAGCTCTACTTAGTGCTTGCAAAGTTCATGGAAATAAGGAAATTGCTCTTCGTTCAGCAAAAAAGCTTCAAGAGCTGTGGCCAAACGACCCTGCAACTTACATACTACTATCAAATGTGTTGGTGACTGGAGGCTGCTGGGATGATGCAGCAGGAGTGAGGAAGCTCATGTATGATAGAGGAATTAGAAAAACTCCTGGTCATAGTTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

577

Amino Acids

63.64

Weight (kDa)

6.57

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008107)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23940 FvH4_1g23941
malus_domestica	MD11G1095500.v1.1
prunus_persica	Prupe.6G071000_v2.0.a1
pyrus_communis	pycom11g08090
rosa_chinensis	RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321
rosa_laevigata	RLG00000018506 RLG00000018509 RLG00000018742
rosa_multiflora	Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002
rosa_roxburghii	Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300
rosa_samantha	Rh2AG282900 Rh2BG294100 Rh3DG236700
rosa_wichuraiana	Rw2G022590 Rw2G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	587, 699
Acc16I	TGCGCA	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	1208
AccB1I	GGYRCC	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	1512
AciI	CCGC	5 cut(s)	553, 667, 979, 1049, 1140
AclWI	GGATC	3 cut(s)	4, 747, 894
AcoI	YGGCCR	1 cut(s)	1595
AcsI	RAATTY	4 cut(s)	292, 753, 1096, 1204
AfaI	GTAC	1 cut(s)	1317
AfiI	CCNNNNNNNGG	2 cut(s)	1048, 1408
AflIII	ACRYGT	1 cut(s)	792
AjnI	CCWGG	4 cut(s)	351, 1199, 1498, 1711
Alw21I	GWGCWC	4 cut(s)	205, 448, 716, 1350
Alw26I	GTCTC	2 cut(s)	1201, 1241
Alw44I	GTGCAC	1 cut(s)	1346
AlwI	GGATC	3 cut(s)	4, 747, 894
AoxI	GGCC	3 cut(s)	402, 975, 1595
ApaLI	GTGCAC	1 cut(s)	1346
ApeKI	GCWGC	3 cut(s)	664, 1650, 1664
ApoI	RAATTY	4 cut(s)	292, 753, 1096, 1204
Asp700I	GAANNNNTTC	2 cut(s)	956, 1033
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	402, 976, 1502
AsuHPI	GGTGA	2 cut(s)	66, 1651
AsuII	TTCGAA	1 cut(s)	1157
AsuNHI	GCTAGC	2 cut(s)	19, 1007
AvaII	GGWCC	1 cut(s)	1502
BaeGI	GKGCMC	1 cut(s)	1350
BalI	TGGCCA	1 cut(s)	1597
BanI	GGYRCC	1 cut(s)	1142
BanII	GRGCYC	1 cut(s)	716
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	4 cut(s)	205, 448, 716, 1350
BbvI	GCAGC	3 cut(s)	651, 1637, 1676
BccI	CCATC	1 cut(s)	1154
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	4 cut(s)	353, 1201, 1500, 1713
BcoDI	GTCTC	2 cut(s)	1201, 1241
BfaI	CTAG	3 cut(s)	20, 723, 1008
BfuAI	ACCTGC	1 cut(s)	1208
BisI	GCNGC	3 cut(s)	665, 1651, 1665
BlsI	GCNGC	3 cut(s)	666, 1652, 1666
Bme1390I	CCNGG	4 cut(s)	353, 1201, 1500, 1713
Bme18I	GGWCC	1 cut(s)	1502
BmgT120I	GGNCC	3 cut(s)	402, 976, 1502
BmiI	GGNNCC	3 cut(s)	403, 1144, 1504
BmrFI	CCNGG	4 cut(s)	353, 1201, 1500, 1713
BmsI	GCATC	2 cut(s)	1127, 1651
BmtI	GCTAGC	2 cut(s)	23, 1011
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	2 cut(s)	374, 1665
Bpu10I	CCTNAGC	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	1157
BsaI	GGTCTC	1 cut(s)	1201
BsaJI	CCNNGG	3 cut(s)	405, 600, 1351
Bsc4I	CCNNNNNNNGG	2 cut(s)	1048, 1408
Bse1I	ACTGG	2 cut(s)	613, 1648
Bse3DI	GCAATG	3 cut(s)	742, 757, 981
BseBI	CCWGG	4 cut(s)	353, 1201, 1500, 1713
BseDI	CCNNGG	3 cut(s)	405, 600, 1351
BseGI	GGATG	2 cut(s)	1146, 1663
BseLI	CCNNNNNNNGG	2 cut(s)	1048, 1408
BseMI	GCAATG	3 cut(s)	742, 757, 981
BseMII	CTCAG	3 cut(s)	65, 312, 461
BseNI	ACTGG	2 cut(s)	613, 1648
BseSI	GKGCMC	1 cut(s)	1350
BseXI	GCAGC	3 cut(s)	651, 1637, 1676
BseYI	CCCAGC	1 cut(s)	1653
BshFI	GGCC	3 cut(s)	404, 977, 1597
BshNI	GGYRCC	1 cut(s)	1142
BsiHKAI	GWGCWC	4 cut(s)	205, 448, 716, 1350
BsiSI	CCGG	1 cut(s)	763
BslI	CCNNNNNNNGG	2 cut(s)	1048, 1408
BsmAI	GTCTC	2 cut(s)	1201, 1241
BsmI	GAATGC	2 cut(s)	247, 907
BsnI	GGCC	3 cut(s)	404, 977, 1597
Bso31I	GGTCTC	1 cut(s)	1201
Bsp119I	TTCGAA	1 cut(s)	1157
Bsp1286I	GDGCHC	4 cut(s)	205, 448, 716, 1350
Bsp143I	GATC	4 cut(s)	9, 739, 886, 1432
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	5 cut(s)	553, 667, 979, 1049, 1140
BspANI	GGCC	3 cut(s)	404, 977, 1597
BspCNI	CTCAG	3 cut(s)	64, 313, 460
BspHI	TCATGA	1 cut(s)	1459
BspLI	GGNNCC	3 cut(s)	403, 1144, 1504
BspMI	ACCTGC	1 cut(s)	1208
BspOI	GCTAGC	2 cut(s)	23, 1011
BspPI	GGATC	3 cut(s)	4, 747, 894
BspQI	GCTCTTC	3 cut(s)	429, 1270, 1569
BspT104I	TTCGAA	1 cut(s)	1157
BspT107I	GGYRCC	1 cut(s)	1142
BspTNI	GGTCTC	1 cut(s)	1201
BsrDI	GCAATG	3 cut(s)	742, 757, 981
BsrI	ACTGG	2 cut(s)	613, 1648
BssECI	CCNNGG	3 cut(s)	405, 600, 1351
BssMI	GATC	4 cut(s)	9, 739, 886, 1432
BssNAI	GTATAC	1 cut(s)	1513
BssT1I	CCWWGG	3 cut(s)	405, 600, 1351
Bst1107I	GTATAC	1 cut(s)	1513
Bst2UI	CCWGG	4 cut(s)	353, 1201, 1500, 1713
Bst4CI	ACNGT	3 cut(s)	255, 1252, 1426
Bst6I	CTCTTC	3 cut(s)	429, 1270, 1569
BstAPI	GCANNNNNTGC	2 cut(s)	911, 1223
BstBI	TTCGAA	1 cut(s)	1157
BstC8I	GCNNGC	9 cut(s)	21, 318, 749, 975, 979, 1009, 1089, 1487, 1534
BstDEI	CTNAG	4 cut(s)	51, 321, 447, 1526
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	1146, 1663
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	12, 742, 889, 1435
BstMAI	GTCTC	2 cut(s)	1201, 1241
BstMBI	GATC	4 cut(s)	9, 739, 886, 1432
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 911, 983, 1223, 1495, 1588
BstNI	CCWGG	4 cut(s)	353, 1201, 1500, 1713
BstNSI	RCATGY	1 cut(s)	1489
BstSCI	CCNGG	4 cut(s)	351, 1199, 1498, 1711
BstSLI	GKGCMC	1 cut(s)	1350
BstV1I	GCAGC	3 cut(s)	651, 1637, 1676
BstV2I	GAAGAC	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	735
BstZ17I	GTATAC	1 cut(s)	1513
BsuRI	GGCC	3 cut(s)	404, 977, 1597
BtgI	CCRYGG	1 cut(s)	600
BtgZI	GCGATG	1 cut(s)	656
BtsCI	GGATG	2 cut(s)	1146, 1663
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
BveI	ACCTGC	1 cut(s)	1208
Cac8I	GCNNGC	9 cut(s)	21, 318, 749, 975, 979, 1009, 1089, 1487, 1534
CciI	TCATGA	1 cut(s)	1459
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	402, 976, 1502
Csp6I	GTAC	1 cut(s)	1316
CspCI	CAANNNNNGTGG	2 cut(s)	1574, 1609
CviQI	GTAC	1 cut(s)	1316
DdeI	CTNAG	4 cut(s)	51, 321, 447, 1526
DpnI	GATC	4 cut(s)	11, 741, 888, 1434
DpnII	GATC	4 cut(s)	9, 739, 886, 1432
EaeI	YGGCCR	1 cut(s)	1595
Eam1104I	CTCTTC	3 cut(s)	429, 1270, 1569
EarI	CTCTTC	3 cut(s)	429, 1270, 1569
Ecl136II	GAGCTC	1 cut(s)	714
Eco130I	CCWWGG	3 cut(s)	405, 600, 1351
Eco24I	GRGCYC	1 cut(s)	716
Eco31I	GGTCTC	1 cut(s)	1201
Eco47I	GGWCC	1 cut(s)	1502
Eco53kI	GAGCTC	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	402, 1502
EcoRI	GAATTC	2 cut(s)	292, 1204
EcoRII	CCWGG	4 cut(s)	351, 1199, 1498, 1711
EcoT14I	CCWWGG	3 cut(s)	405, 600, 1351
EcoT38I	GRGCYC	1 cut(s)	716
ErhI	CCWWGG	3 cut(s)	405, 600, 1351
FalI	AAGNNNNNCTT	2 cut(s)	1509, 1541
FauI	CCCGC	3 cut(s)	546, 986, 1042
FblI	GTMKAC	1 cut(s)	1512
Fnu4HI	GCNGC	3 cut(s)	665, 1651, 1665
FokI	GGATG	2 cut(s)	1133, 1670
FriOI	GRGCYC	1 cut(s)	716
Fsp4HI	GCNGC	3 cut(s)	665, 1651, 1665
FspBI	CTAG	3 cut(s)	20, 723, 1008
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	3 cut(s)	665, 1651, 1665
GsaI	CCCAGC	1 cut(s)	1657
GsuI	CTGGAG	2 cut(s)	374, 1665
HaeIII	GGCC	3 cut(s)	404, 977, 1597
HapII	CCGG	1 cut(s)	763
HhaI	GCGC	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	4 cut(s)	860, 945, 1089, 1580
HinfI	GANTC	2 cut(s)	545, 1154
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	2 cut(s)	66, 1651
Hpy166II	GTNNAC	3 cut(s)	1170, 1348, 1513
Hpy188I	TCNGA	7 cut(s)	271, 634, 816, 829, 964, 1039, 1110
Hpy188III	TCNNGA	4 cut(s)	13, 1078, 1460, 1586
Hpy8I	GTNNAC	3 cut(s)	1170, 1348, 1513
HpyAV	CCTTC	4 cut(s)	770, 821, 1315, 1483
HpyCH4III	ACNGT	3 cut(s)	255, 1252, 1426
HpyCH4IV	ACGT	1 cut(s)	792
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 911, 983, 1223, 1495, 1588
HpyF3I	CTNAG	4 cut(s)	51, 321, 447, 1526
HpySE526I	ACGT	1 cut(s)	792
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	9, 739, 886, 1432
LguI	GCTCTTC	3 cut(s)	429, 1270, 1569
LmnI	GCTCC	2 cut(s)	40, 1411
Lsp1109I	GCAGC	3 cut(s)	651, 1637, 1676
LweI	GCATC	2 cut(s)	1127, 1651
MaeI	CTAG	3 cut(s)	20, 723, 1008
MaeII	ACGT	1 cut(s)	792
MaeIII	GTNAC	5 cut(s)	283, 604, 691, 805, 1639
MalI	GATC	4 cut(s)	11, 741, 888, 1434
MboI	GATC	4 cut(s)	9, 739, 886, 1432
MboII	GAAGA	6 cut(s)	63, 446, 988, 1287, 1448, 1556
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	4 cut(s)	205, 448, 716, 1350
MlsI	TGGCCA	1 cut(s)	1597
MluNI	TGGCCA	1 cut(s)	1597
MmeI	TCCRAC	1 cut(s)	1703
Mox20I	TGGCCA	1 cut(s)	1597
MroXI	GAANNNNTTC	2 cut(s)	956, 1033
MscI	TGGCCA	1 cut(s)	1597
MseI	TTAA	6 cut(s)	362, 540, 561, 789, 1016, 1373
Msp20I	TGGCCA	1 cut(s)	1597
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	4 cut(s)	353, 1201, 1500, 1713
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	247, 907
MvaI	CCWGG	4 cut(s)	353, 1201, 1500, 1713
MwoI	GCNNNNNNNGC	6 cut(s)	25, 911, 983, 1223, 1495, 1588
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	4 cut(s)	9, 739, 886, 1432
NheI	GCTAGC	2 cut(s)	19, 1007
NlaIV	GGNNCC	3 cut(s)	403, 1144, 1504
NmuCI	GTSAC	1 cut(s)	1639
NsbI	TGCGCA	1 cut(s)	115
NspI	RCATGY	1 cut(s)	1489
NspV	TTCGAA	1 cut(s)	1157
PaeI	GCATGC	1 cut(s)	1489
PagI	TCATGA	1 cut(s)	1459
PciSI	GCTCTTC	3 cut(s)	429, 1270, 1569
PctI	GAATGC	2 cut(s)	247, 907
PdmI	GAANNNNTTC	2 cut(s)	956, 1033
PfeI	GAWTC	2 cut(s)	545, 1154
PfoI	TCCNGGA	2 cut(s)	351, 1199
PkrI	GCNGC	3 cut(s)	666, 1652, 1666
PpuMI	RGGWCCY	1 cut(s)	1502
PsiI	TTATAA	2 cut(s)	587, 699
Psp124BI	GAGCTC	1 cut(s)	716
Psp5II	RGGWCCY	1 cut(s)	1502
Psp6I	CCWGG	4 cut(s)	351, 1199, 1498, 1711
PspFI	CCCAGC	1 cut(s)	1653
PspGI	CCWGG	4 cut(s)	351, 1199, 1498, 1711
PspN4I	GGNNCC	3 cut(s)	403, 1144, 1504
PspPI	GGNCC	3 cut(s)	402, 976, 1502
PspPPI	RGGWCCY	1 cut(s)	1502
RsaI	GTAC	1 cut(s)	1317
RsaNI	GTAC	1 cut(s)	1316
SacI	GAGCTC	1 cut(s)	716
SapI	GCTCTTC	3 cut(s)	429, 1270, 1569
SaqAI	TTAA	6 cut(s)	362, 540, 561, 789, 1016, 1373
SatI	GCNGC	3 cut(s)	665, 1651, 1665
Sau3AI	GATC	4 cut(s)	9, 739, 886, 1432
Sau96I	GGNCC	3 cut(s)	402, 976, 1502
ScrFI	CCNGG	4 cut(s)	353, 1201, 1500, 1713
SduI	GDGCHC	4 cut(s)	205, 448, 716, 1350
SfaNI	GCATC	2 cut(s)	1127, 1651
SfuI	TTCGAA	1 cut(s)	1157
SinI	GGWCC	1 cut(s)	1502
SphI	GCATGC	1 cut(s)	1489
SsiI	CCGC	5 cut(s)	553, 667, 979, 1049, 1140
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	3 cut(s)	20, 723, 1008
SstI	GAGCTC	1 cut(s)	716
StyD4I	CCNGG	4 cut(s)	351, 1199, 1498, 1711
StyI	CCWWGG	3 cut(s)	405, 600, 1351
TaaI	ACNGT	3 cut(s)	255, 1252, 1426
TaiI	ACGT	1 cut(s)	795
TaqI	TCGA	4 cut(s)	122, 1157, 1368, 1444
TatI	WGTACW	1 cut(s)	1315
TfiI	GAWTC	2 cut(s)	545, 1154
Tru1I	TTAA	6 cut(s)	362, 540, 561, 789, 1016, 1373
Tru9I	TTAA	6 cut(s)	362, 540, 561, 789, 1016, 1373
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	1639
TseI	GCWGC	3 cut(s)	664, 1650, 1664
Tsp45I	GTSAC	1 cut(s)	1639
TspDTI	ATGAA	9 cut(s)	276, 443, 746, 785, 1193, 1197, 1448, 1476, 1532
TspGWI	ACGGA	1 cut(s)	1498
TspRI	CASTG	1 cut(s)	205
VneI	GTGCAC	1 cut(s)	1346
VpaK11BI	GGWCC	1 cut(s)	1502
XapI	RAATTY	4 cut(s)	292, 753, 1096, 1204
XceI	RCATGY	1 cut(s)	1489
XmiI	GTMKAC	1 cut(s)	1512
XmnI	GAANNNNTTC	2 cut(s)	956, 1033
XspI	CTAG	3 cut(s)	20, 723, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.