Rh2BG294100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008107
Physical Location & Seq
Reverse (-)
33268605 .. 33269987
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG294100.1

Sequence Viewer

Length: 1383 bp
ATGGACATGTTAAGGGTCGGAACAGAGCCGCCGACGACGTTCAGCTTTTCGGGGGTGTTGGAGTGTTGCGCACAGTTAGAAGCTGAAGAGCTTGGAGCTCAGGTGCACGGTTTGAGCTTGAAAATGGGGATTTGTGATGATGTTGTGGTGGGAACAGGATTGATAGATATGTATTCAAAGTGTTGTAAGGTCAGAGAGTCATGGCGGGTGTTTAATCAAATGCGAGACAAGAATGTTGTGACATGGACTTCCATGGTTACTGGGTGTGCGCAGAGCGGACAGTCTGATGAGGCAATGACTTTAGTGAGAGAAATGCTGAGGTTGGGTCTCAAGCCGAATTATGTCACTTACAATAGTTTGTTGAGTTCATTTGCTAGAATGGACTTTTGGGATTGTTGCAGGCAAATCCATTGCCGGATAGTGAAAGAAGGGTTTGATTCCAACGTGTATATTGTGGTTACCCTTTTGACCTTATATTCAGAGTCTAACAGTAGCTTGGAGGACTTCCGTGCGCTGTGCTCATGTGTTTCAGTGTGGGATCAAATCTCATGGAATGCAGTAATTGCGGGTTTTTGTAATATTGGGAGCAGTGAGGAAGCTCTGAAGTGTTTCTCTGAAATGAGGCAGGCCGGTGTTGCTGTGGATTTTTTCACATTTGCAAGCATTTTAAGAGCAGCAGGAACTCTTTCAGCACTTGTAGAGGGAAAGAAAATCCATGCTCTCATCTTCAAGAGTGGACATGCTTCAAATTTATGTGTTCAAAATGGGCTTGTTTCAATGTATGGAAGATGCGGTGCCATCCATGCTGCAAAGTGGGTGTTTACTTTGATGAAAGAACGTGATGTGGTCTCCTGGAATTCATTATTATCAGGTTATGCACATCATGGATTTGGGAAGGAGACTGTTGAATTGTTTGAGCAAATGAGAAGAACAGAGGTCAAACCAAATAATACCACCTTCCTGATTGTACTAACTGCCTGTAGCCATGTTGGTTTGTTGGACAAAGGGCTCGAGTATTTCAATCTAATGAGAAATGATGATTTGCCTGAACCACCTAAGGTGGAGCATTACGCTACCGTTGTTAATCTTTTTGGTCGGGCTGGAAACCTTCACGAAGCGGAAGCCTTCATCAATAGCATGCCAATAGAGCCAGGCGCCTCAGTATACAAAGCTCTACTTAGTGCGTGCCAAGTTCATGGAAACAGAGAACTTGCTCTTCATTCTGCAACAAAGCTTCAGCAACTGTGCCCAAATGATCCTGCAACTTACATACTGCTATCAAATGTGTTGTTGACAAGAGGCTCCTGGGATGATGCAGCAGGAGTACGGAAGCTCATGTATGATAGAGGAATAAGAAAAACTCCTGGTTATAGTTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

460

Amino Acids

51.08

Weight (kDa)

6.32

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 64 - 147 2.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 77 - 126 4.3e-13 PPR repeat family
PPR_3 PF13812 78 - 124 3.9e-08 Pentatricopeptide repeat domain
PPR PF01535 80 - 110 8.9e-08 PPR repeat
PPR_2 PF13041 180 - 225 3.1e-10 PPR repeat family
PPR PF01535 182 - 212 2.7e-07 PPR repeat
PPR_2 PF13041 280 - 328 4.8e-12 PPR repeat family
PPR PF01535 283 - 310 1.5e-06 PPR repeat
E_motif PF20431 399 - 460 4.5e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 70, 270
AccB1I GGYRCC 2 cut(s) 794, 1154
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 1164
AciI CCGC 6 cut(s) 29, 205, 276, 566, 792, 1118
AclWI GGATC 2 cut(s) 546, 1250
AcsI RAATTY 2 cut(s) 748, 856
AcuI CTGAAG 3 cut(s) 105, 623, 1220
AcyI GRCGYC 1 cut(s) 1155
AfaI GTAC 2 cut(s) 969, 1326
AflIII ACRYGT 2 cut(s) 6, 444
AgsI TTSAA 8 cut(s) 121, 177, 730, 747, 761, 777, 908, 1021
AjnI CCWGG 4 cut(s) 851, 1150, 1304, 1363
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
Alw21I GWGCWC 3 cut(s) 100, 108, 521
Alw26I GTCTC 4 cut(s) 219, 332, 853, 893
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 2 cut(s) 546, 1250
AlwNI CAGNNNCTG 1 cut(s) 1243
Ama87I CYCGRG 1 cut(s) 1010
AoxI GGCC 1 cut(s) 627
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 674, 806, 1316
ApoI RAATTY 2 cut(s) 748, 856
Asp700I GAANNNNTTC 2 cut(s) 608, 685
AspLEI GCGC 4 cut(s) 71, 271, 514, 1157
AvaI CYCGRG 1 cut(s) 1010
AxyI CCTNAGG 1 cut(s) 1056
BaeGI GKGCMC 2 cut(s) 108, 1250
BanI GGYRCC 2 cut(s) 794, 1154
BanII GRGCYC 2 cut(s) 100, 1011
Bbv12I GWGCWC 3 cut(s) 100, 108, 521
BbvCI CCTCAGC 1 cut(s) 317
BbvI GCAGC 3 cut(s) 686, 793, 1328
BccI CCATC 1 cut(s) 806
BciT130I CCWGG 4 cut(s) 853, 1152, 1306, 1365
BcoDI GTCTC 4 cut(s) 219, 332, 853, 893
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 979
BfoI RGCGCY 1 cut(s) 1158
BisI GCNGC 4 cut(s) 29, 675, 807, 1317
BlsI GCNGC 4 cut(s) 30, 676, 808, 1318
Bme1390I CCNGG 4 cut(s) 853, 1152, 1306, 1365
BmeT110I CYCGRG 1 cut(s) 1010
BmiI GGNNCC 3 cut(s) 796, 1156, 1303
BmrFI CCNGG 4 cut(s) 853, 1152, 1306, 1365
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 779, 1303
BmuI ACTGGG 1 cut(s) 270
Bpu10I CCTNAGC 2 cut(s) 99, 317
BpuEI CTTGAG 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 1155
BsaI GGTCTC 2 cut(s) 332, 853
BsaJI CCNNGG 2 cut(s) 252, 1305
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 265
Bse21I CCTNAGG 1 cut(s) 1056
Bse3DI GCAATG 2 cut(s) 300, 409
BseBI CCWGG 4 cut(s) 853, 1152, 1306, 1365
BseDI CCNNGG 2 cut(s) 252, 1305
BseGI GGATG 2 cut(s) 798, 1315
BseMI GCAATG 2 cut(s) 300, 409
BseMII CTCAG 3 cut(s) 113, 308, 1173
BseNI ACTGG 1 cut(s) 265
BseSI GKGCMC 2 cut(s) 108, 1250
BseXI GCAGC 3 cut(s) 686, 793, 1328
BshFI GGCC 1 cut(s) 629
BshNI GGYRCC 2 cut(s) 794, 1154
BsiHKAI GWGCWC 3 cut(s) 100, 108, 521
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 2 cut(s) 415, 630
BsmAI GTCTC 4 cut(s) 219, 332, 853, 893
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 1 cut(s) 629
Bso31I GGTCTC 2 cut(s) 332, 853
BsoBI CYCGRG 1 cut(s) 1010
Bsp1286I GDGCHC 5 cut(s) 100, 108, 521, 1011, 1250
Bsp143I GATC 2 cut(s) 538, 1255
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 6 cut(s) 29, 205, 276, 566, 792, 1118
BspANI GGCC 1 cut(s) 629
BspCNI CTCAG 3 cut(s) 112, 309, 1172
BspLI GGNNCC 3 cut(s) 796, 1156, 1303
BspPI GGATC 2 cut(s) 546, 1250
BspQI GCTCTTC 2 cut(s) 81, 1221
BspT107I GGYRCC 2 cut(s) 794, 1154
BspTNI GGTCTC 2 cut(s) 332, 853
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 300, 409
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 2 cut(s) 252, 1305
BssMI GATC 2 cut(s) 538, 1255
BssNAI GTATAC 1 cut(s) 1165
BssNI GRCGYC 1 cut(s) 1155
BssT1I CCWWGG 1 cut(s) 252
Bst1107I GTATAC 1 cut(s) 1165
Bst2UI CCWGG 4 cut(s) 853, 1152, 1306, 1365
Bst4CI ACNGT 7 cut(s) 75, 110, 282, 491, 904, 1078, 1245
Bst6I CTCTTC 2 cut(s) 81, 1221
BstACI GRCGYC 1 cut(s) 1155
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 5 cut(s) 401, 627, 661, 1139, 1186
BstDEI CTNAG 5 cut(s) 99, 317, 1056, 1159, 1178
BstDSI CCRYGG 1 cut(s) 252
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 2 cut(s) 798, 1315
BstH2I RGCGCY 1 cut(s) 1158
BstHHI GCGC 4 cut(s) 71, 271, 514, 1157
BstKTI GATC 2 cut(s) 541, 1258
BstMAI GTCTC 4 cut(s) 219, 332, 853, 893
BstMBI GATC 2 cut(s) 538, 1255
BstMWI GCNNNNNNNGC 4 cut(s) 563, 635, 803, 1147
BstNI CCWGG 4 cut(s) 853, 1152, 1306, 1365
BstNSI RCATGY 3 cut(s) 10, 743, 1141
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 4 cut(s) 851, 1150, 1304, 1363
BstSFI CTRYAG 1 cut(s) 979
BstSLI GKGCMC 2 cut(s) 108, 1250
BstV1I GCAGC 3 cut(s) 686, 793, 1328
BstXI CCANNNNNNTGG 1 cut(s) 1196
BstZ17I GTATAC 1 cut(s) 1165
Bsu36I CCTNAGG 1 cut(s) 1056
BsuRI GGCC 1 cut(s) 629
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 798, 1315
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 2 cut(s) 537, 595
Cac8I GCNNGC 5 cut(s) 401, 627, 661, 1139, 1186
CaiI CAGNNNCTG 1 cut(s) 1243
CfoI GCGC 4 cut(s) 71, 271, 514, 1157
Cfr10I RCCGGY 1 cut(s) 629
Csp6I GTAC 2 cut(s) 968, 1325
CviQI GTAC 2 cut(s) 968, 1325
DdeI CTNAG 5 cut(s) 99, 317, 1056, 1159, 1178
DinI GGCGCC 1 cut(s) 1156
DpnI GATC 2 cut(s) 540, 1257
DpnII GATC 2 cut(s) 538, 1255
Eam1104I CTCTTC 2 cut(s) 81, 1221
EarI CTCTTC 2 cut(s) 81, 1221
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 100, 1011
Eco31I GGTCTC 2 cut(s) 332, 853
Eco53kI GAGCTC 1 cut(s) 98
Eco57I CTGAAG 3 cut(s) 105, 623, 1220
Eco81I CCTNAGG 1 cut(s) 1056
Eco88I CYCGRG 1 cut(s) 1010
Eco91I GGTNACC 1 cut(s) 457
EcoICRI GAGCTC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 457
EcoRI GAATTC 1 cut(s) 856
EcoRII CCWGG 4 cut(s) 851, 1150, 1304, 1363
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 100, 1011
EgeI GGCGCC 1 cut(s) 1156
EheI GGCGCC 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 252
FalI AAGNNNNNCTT 2 cut(s) 1161, 1193
FauI CCCGC 2 cut(s) 198, 559
FblI GTMKAC 1 cut(s) 1164
Fnu4HI GCNGC 4 cut(s) 29, 675, 807, 1317
FokI GGATG 2 cut(s) 785, 1322
FriOI GRGCYC 2 cut(s) 100, 1011
Fsp4HI GCNGC 4 cut(s) 29, 675, 807, 1317
FspBI CTAG 1 cut(s) 375
FspI TGCGCA 2 cut(s) 70, 270
GlaI GCGC 4 cut(s) 70, 270, 513, 1156
GluI GCNGC 4 cut(s) 29, 675, 807, 1317
HaeII RGCGCY 1 cut(s) 1158
HaeIII GGCC 1 cut(s) 629
HapII CCGG 2 cut(s) 415, 630
HhaI GCGC 4 cut(s) 71, 271, 514, 1157
Hin1I GRCGYC 1 cut(s) 1155
Hin6I GCGC 4 cut(s) 69, 269, 512, 1155
HinP1I GCGC 4 cut(s) 69, 269, 512, 1155
HincII GTYRAC 1 cut(s) 1293
HindII GTYRAC 1 cut(s) 1293
HindIII AAGCTT 1 cut(s) 1232
HinfI GANTC 3 cut(s) 197, 437, 482
HpaII CCGG 2 cut(s) 415, 630
Hpy166II GTNNAC 5 cut(s) 106, 737, 822, 1165, 1293
Hpy188I TCNGA 6 cut(s) 20, 194, 286, 481, 603, 616
Hpy188III TCNNGA 3 cut(s) 730, 961, 1112
Hpy8I GTNNAC 5 cut(s) 106, 737, 822, 1165, 1293
Hpy99I CGWCG 2 cut(s) 37, 40
HpyAV CCTTC 5 cut(s) 422, 889, 967, 1118, 1135
HpyCH4III ACNGT 7 cut(s) 75, 110, 282, 491, 904, 1078, 1245
HpyCH4IV ACGT 3 cut(s) 38, 444, 838
HpyCH4V TGCA 9 cut(s) 106, 399, 557, 659, 809, 878, 1226, 1262, 1316
HpyF10VI GCNNNNNNNGC 4 cut(s) 563, 635, 803, 1147
HpyF3I CTNAG 5 cut(s) 99, 317, 1056, 1159, 1178
HpySE526I ACGT 3 cut(s) 38, 444, 838
Hsp92I GRCGYC 1 cut(s) 1155
HspAI GCGC 4 cut(s) 69, 269, 512, 1155
KasI GGCGCC 1 cut(s) 1154
Kzo9I GATC 2 cut(s) 538, 1255
LguI GCTCTTC 2 cut(s) 81, 1221
LmnI GCTCC 4 cut(s) 95, 585, 1063, 1307
Lsp1109I GCAGC 3 cut(s) 686, 793, 1328
LweI GCATC 2 cut(s) 779, 1303
MaeI CTAG 1 cut(s) 375
MaeII ACGT 3 cut(s) 38, 444, 838
MaeIII GTNAC 4 cut(s) 238, 256, 343, 457
MalI GATC 2 cut(s) 540, 1257
MbiI CCGCTC 1 cut(s) 276
MboI GATC 2 cut(s) 538, 1255
MboII GAAGA 5 cut(s) 98, 718, 798, 939, 1208
MhlI GDGCHC 5 cut(s) 100, 108, 521, 1011, 1250
MluCI AATT 5 cut(s) 337, 561, 748, 856, 908
Mly113I GGCGCC 1 cut(s) 1155
MlyI GAGTC 2 cut(s) 206, 491
MmeI TCCRAC 4 cut(s) 39, 465, 978, 1355
MroXI GAANNNNTTC 2 cut(s) 608, 685
MseI TTAA 4 cut(s) 11, 213, 668, 1083
MspI CCGG 2 cut(s) 415, 630
MspR9I CCNGG 4 cut(s) 853, 1152, 1306, 1365
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 4 cut(s) 853, 1152, 1306, 1365
MwoI GCNNNNNNNGC 4 cut(s) 563, 635, 803, 1147
NarI GGCGCC 1 cut(s) 1155
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 538, 1255
NlaIV GGNNCC 3 cut(s) 796, 1156, 1303
NmuCI GTSAC 2 cut(s) 238, 343
NsbI TGCGCA 2 cut(s) 70, 270
NspI RCATGY 3 cut(s) 10, 743, 1141
PaeI GCATGC 1 cut(s) 1141
PaeR7I CTCGAG 1 cut(s) 1010
PciI ACATGT 1 cut(s) 6
PciSI GCTCTTC 2 cut(s) 81, 1221
PctI GAATGC 1 cut(s) 559
PdmI GAANNNNTTC 2 cut(s) 608, 685
PfeI GAWTC 1 cut(s) 437
PfoI TCCNGGA 1 cut(s) 851
PkrI GCNGC 4 cut(s) 30, 676, 808, 1318
PleI GAGTC 2 cut(s) 205, 490
PluTI GGCGCC 1 cut(s) 1158
PpsI GAGTC 2 cut(s) 205, 490
PscI ACATGT 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 4 cut(s) 851, 1150, 1304, 1363
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 4 cut(s) 851, 1150, 1304, 1363
PspN4I GGNNCC 3 cut(s) 796, 1156, 1303
PspXI VCTCGAGB 1 cut(s) 1010
PstNI CAGNNNCTG 1 cut(s) 1243
RsaI GTAC 2 cut(s) 969, 1326
RsaNI GTAC 2 cut(s) 968, 1325
SacI GAGCTC 1 cut(s) 100
SapI GCTCTTC 2 cut(s) 81, 1221
SaqAI TTAA 4 cut(s) 11, 213, 668, 1083
SatI GCNGC 4 cut(s) 29, 675, 807, 1317
Sau3AI GATC 2 cut(s) 538, 1255
SchI GAGTC 2 cut(s) 206, 491
ScrFI CCNGG 4 cut(s) 853, 1152, 1306, 1365
SduI GDGCHC 5 cut(s) 100, 108, 521, 1011, 1250
SfaNI GCATC 2 cut(s) 779, 1303
SfcI CTRYAG 1 cut(s) 979
SfoI GGCGCC 1 cut(s) 1156
Sfr274I CTCGAG 1 cut(s) 1010
SlaI CTCGAG 1 cut(s) 1010
SmlI CTYRAG 2 cut(s) 329, 1010
SmoI CTYRAG 2 cut(s) 329, 1010
SphI GCATGC 1 cut(s) 1141
Sse9I AATT 5 cut(s) 337, 561, 748, 856, 908
SsiI CCGC 6 cut(s) 29, 205, 276, 566, 792, 1118
SspDI GGCGCC 1 cut(s) 1154
SspI AATATT 1 cut(s) 580
SspMI CTAG 1 cut(s) 375
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 4 cut(s) 851, 1150, 1304, 1363
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 7 cut(s) 75, 110, 282, 491, 904, 1078, 1245
TaiI ACGT 3 cut(s) 41, 447, 841
TaqI TCGA 1 cut(s) 1011
TasI AATT 5 cut(s) 337, 561, 748, 856, 908
TatI WGTACW 1 cut(s) 967
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 4 cut(s) 11, 213, 668, 1083
Tru9I TTAA 4 cut(s) 11, 213, 668, 1083
TscAI CASTG 2 cut(s) 537, 595
TseFI GTSAC 2 cut(s) 238, 343
TseI GCWGC 3 cut(s) 674, 806, 1316
Tsp45I GTSAC 2 cut(s) 238, 343
TspDTI ATGAA 6 cut(s) 357, 845, 849, 1117, 1184, 1208
TspGWI ACGGA 2 cut(s) 497, 1342
TspRI CASTG 2 cut(s) 537, 595
VneI GTGCAC 1 cut(s) 104
XapI RAATTY 2 cut(s) 748, 856
XceI RCATGY 3 cut(s) 10, 743, 1141
XhoI CTCGAG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 1164
XmnI GAANNNNTTC 2 cut(s) 608, 685
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.