Rroxscaffold_2G00103950

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008107
Physical Location & Seq
Reverse (-)
26971922 .. 26978407
6486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103950.1

Sequence Viewer

Length: 777 bp
ATGACTTTAGTGAGAGAAATGCTGCGGTTGGGTCTCAAGCCGAATTATGCTACTTATAATAGTTTGTTGAGTTCATTTGCTAGCATGGACTTTTGGGCTTGTTGCAGGCAAATCCATTGCCGGATAGTGAAAGAAGGGTTTGATTCCAATGTGTATATTGTGGTTTACCCTTTTGACCTTATATTCGAGTCCGATAGTAGCTTGAAGGACTTCTGTGCGCTTTGCTCATGTGTTTTTCGGTGTGGGATCAAATCTCATGGAATAGCAGAAGAGAGGTGGATATTCGAAAGGAATAGTACTCGTGACCGTAACGTCATCTTACGTATAGGCGGTCAAGAAACAAGAGCTGAAGGCTCATCTCCTTTGTTCCTTCAAAACCTCACCAAAATCATATCTTTCTGCGCAACATCGGCTTCTTTCGATGTGGGTAGCGCCATTCACGCCATTGTTATCAAGTTGGGTTTTTGTTCGAATGTCTATATGTGCGTTTCTTCGTCTTCATGTACGGCAAATGTGGCAAGTCGTGGAATGCCTCGTAAGGTGTTCGACGAAACGCCTCACGTAAATGTAGTGACTTGGAACTTTTTGATTTCTGGTTATTTGCAAGTCGGTTCGCCACTCGCAGCAACTCATTTGTTTCCGGACATGTTAAGGGTCGGAACACAGCCGCCAATGACGTTTAGTTTCTCGAGGGTGTTGGTGTGTGCGCGCACGCTAGAAGTCGAAGAGCTTGGAGCTCGGTGTGCATGGTTTGGGCTTGAAAATGGGGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

258

Amino Acids

28.77

Weight (kDa)

7.48

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 189 - 223 4.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AasI GACNNNNNNGTC 1 cut(s) 311
Acc16I TGCGCA 1 cut(s) 403
AccII CGCG 1 cut(s) 709
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 3 cut(s) 25, 330, 668
AclWI GGATC 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 298, 505
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 3 cut(s) 205, 374, 761
AluBI AGCT 4 cut(s) 201, 347, 730, 737
AluI AGCT 4 cut(s) 201, 347, 730, 737
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 688
Aor13HI TCCGGA 1 cut(s) 640
ApeKI GCWGC 2 cut(s) 22, 623
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 5 cut(s) 220, 404, 434, 709, 711
AsuHPI GGTGA 1 cut(s) 373
AsuII TTCGAA 2 cut(s) 285, 470
AsuNHI GCTAGC 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 688
BanII GRGCYC 1 cut(s) 739
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 9, 635
BceAI ACGGC 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 2 cut(s) 81, 716
BfoI RGCGCY 1 cut(s) 435
BisI GCNGC 3 cut(s) 23, 624, 668
BlsI GCNGC 3 cut(s) 24, 625, 669
BmcAI AGTACT 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 688
BmtI GCTAGC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 489
Bpu14I TTCGAA 2 cut(s) 285, 470
BpuEI CTTGAG 1 cut(s) 20
BsaAI YACGTR 2 cut(s) 323, 562
BsaI GGTCTC 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 115
BseAI TCCGGA 1 cut(s) 640
BseMI GCAATG 1 cut(s) 115
BsePI GCGCGC 1 cut(s) 707
BseXI GCAGC 2 cut(s) 9, 635
Bsh1236I CGCG 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 2 cut(s) 121, 641
BsmAI GTCTC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 534
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 688
Bsp119I TTCGAA 2 cut(s) 285, 470
Bsp1286I GDGCHC 1 cut(s) 739
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 3 cut(s) 25, 330, 668
BspEI TCCGGA 1 cut(s) 640
BspFNI CGCG 1 cut(s) 709
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 720
BspT104I TTCGAA 2 cut(s) 285, 470
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 115
BssHII GCGCGC 1 cut(s) 707
BssMI GATC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 264, 720
BstBAI YACGTR 2 cut(s) 323, 562
BstBI TTCGAA 2 cut(s) 285, 470
BstC8I GCNNGC 4 cut(s) 82, 107, 709, 713
BstFNI CGCG 1 cut(s) 709
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 5 cut(s) 220, 404, 434, 709, 711
BstKTI GATC 1 cut(s) 249
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 410, 440, 515, 743
BstNSI RCATGY 1 cut(s) 649
BstSNI TACGTA 1 cut(s) 323
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 2 cut(s) 9, 635
BstV2I GAAGAC 1 cut(s) 489
Cac8I GCNNGC 4 cut(s) 82, 107, 709, 713
CfoI GCGC 5 cut(s) 220, 404, 434, 709, 711
Csp6I GTAC 2 cut(s) 297, 504
CviAII CATG 6 cut(s) 85, 228, 257, 501, 646, 747
CviQI GTAC 2 cut(s) 297, 504
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 2 cut(s) 264, 720
EarI CTCTTC 2 cut(s) 264, 720
Ecl136II GAGCTC 1 cut(s) 737
Eco105I TACGTA 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 688
EcoICRI GAGCTC 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 739
FaeI CATG 6 cut(s) 88, 231, 260, 504, 649, 750
FatI CATG 6 cut(s) 84, 227, 256, 500, 645, 746
Fnu4HI GCNGC 3 cut(s) 23, 624, 668
FriOI GRGCYC 1 cut(s) 739
Fsp4HI GCNGC 3 cut(s) 23, 624, 668
FspBI CTAG 2 cut(s) 81, 716
FspI TGCGCA 1 cut(s) 403
GlaI GCGC 5 cut(s) 219, 403, 433, 708, 710
GluI GCNGC 3 cut(s) 23, 624, 668
HaeII RGCGCY 1 cut(s) 435
HapII CCGG 2 cut(s) 121, 641
HhaI GCGC 5 cut(s) 220, 404, 434, 709, 711
Hin1II CATG 6 cut(s) 88, 231, 260, 504, 649, 750
Hin6I GCGC 5 cut(s) 218, 402, 432, 707, 709
HinP1I GCGC 5 cut(s) 218, 402, 432, 707, 709
HinfI GANTC 2 cut(s) 143, 188
HpaII CCGG 2 cut(s) 121, 641
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 193, 659
Hpy188III TCNNGA 4 cut(s) 302, 335, 641, 688
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 4 cut(s) 128, 199, 344, 380
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 4 cut(s) 312, 322, 561, 677
HpyCH4V TGCA 3 cut(s) 105, 604, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 440, 515, 743
HpySE526I ACGT 4 cut(s) 312, 322, 561, 677
Hsp92II CATG 6 cut(s) 88, 231, 260, 504, 649, 750
HspAI GCGC 5 cut(s) 218, 402, 432, 707, 709
Kpn2I TCCGGA 1 cut(s) 640
Kzo9I GATC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 1 cut(s) 734
LpnPI CCDG 4 cut(s) 91, 134, 579, 654
Lsp1109I GCAGC 2 cut(s) 9, 635
MaeI CTAG 2 cut(s) 81, 716
MaeII ACGT 4 cut(s) 312, 322, 561, 677
MaeIII GTNAC 3 cut(s) 302, 308, 571
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 4 cut(s) 281, 483, 489, 737
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 5 cut(s) 267, 389, 543, 567, 684
MroI TCCGGA 1 cut(s) 640
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 564
MspI CCGG 2 cut(s) 121, 641
Mva1269I GAATGC 1 cut(s) 534
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 4 cut(s) 410, 440, 515, 743
NdeII GATC 1 cut(s) 246
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 6 cut(s) 88, 231, 260, 504, 649, 750
NmuCI GTSAC 2 cut(s) 302, 571
NsbI TGCGCA 1 cut(s) 403
NspI RCATGY 1 cut(s) 649
NspV TTCGAA 2 cut(s) 285, 470
PaeR7I CTCGAG 1 cut(s) 688
PauI GCGCGC 1 cut(s) 707
PciI ACATGT 1 cut(s) 645
PciSI GCTCTTC 1 cut(s) 720
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 24, 625, 669
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Ppu21I YACGTR 2 cut(s) 323, 562
PscI ACATGT 1 cut(s) 645
PsiI TTATAA 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 739
PteI GCGCGC 1 cut(s) 707
RsaI GTAC 2 cut(s) 298, 505
RsaNI GTAC 2 cut(s) 297, 504
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 739
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 3 cut(s) 23, 624, 668
Sau3AI GATC 1 cut(s) 246
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 197
SduI GDGCHC 1 cut(s) 739
Sfr274I CTCGAG 1 cut(s) 688
SfuI TTCGAA 2 cut(s) 285, 470
SlaI CTCGAG 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 35, 688
SmoI CTYRAG 2 cut(s) 35, 688
SnaBI TACGTA 1 cut(s) 323
Sse9I AATT 1 cut(s) 43
SsiI CCGC 3 cut(s) 25, 330, 668
SspMI CTAG 2 cut(s) 81, 716
SstI GAGCTC 1 cut(s) 739
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 4 cut(s) 315, 325, 564, 680
TaqI TCGA 7 cut(s) 186, 285, 420, 470, 546, 689, 723
TasI AATT 1 cut(s) 43
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 670
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TseFI GTSAC 2 cut(s) 302, 571
TseI GCWGC 2 cut(s) 22, 623
Tsp45I GTSAC 2 cut(s) 302, 571
TspDTI ATGAA 2 cut(s) 63, 489
XceI RCATGY 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 688
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 2 cut(s) 81, 716
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.