Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008107

Physical Location & Seq

Genomic Coordinates Forward (+)

57769451 .. 57771070

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTCCTCAACGGCTTAACCACCGAATGGCCTTGCTCTATTACCACTTCTCGTGCTCTCGTCGGCTTGTACGGCTCATGTGGCAAGTCGTGGAATGCCCAGAAGGTGTTCGACGAAACGCCTCACAGAAATGTAGTGACTTGGAACTGTTTGATTTCTGGTTATTTGCAAGCTGGTTCTCCACTGAGAGCAACTCGTTTGTTTCTGGACATGTTAAGGGTCGGAACAGAGCCGCCGACGACGTTCAGCTTATCGGGGGTGTTGGTGTGTTGCGCACAGTTAGAAGCTGAAGAGCTTGGAGCTCAGGTGCACGGTTTGAGCTTGAAAATGGGGCTTTGTGATGATGTTGTGGTGGGAACAGGATTGATAGATATGTATTCAAAGTGTTGTAAGGTTAGAGAGTCATGGCTGGTGTTTAATCAAATGCGAGACAAGAATATTGTGACATGGACTTCCATGGTTACTGGGTGTGCACAGAGTGGGCAGTCTGATGAGGCAATGACTTTGGCAAATCCATTGCCGGATAGTGAGGAAGCTCTGAAGTGTTTATCTGAAATGAGGCAGGCCGTTATTGCTGTGGATTTTTTCACATTTACAAGCATTTTAAGAGCAGCAGGAACTCTTTCAGCACTTGTAGAGGGAAAGAAAATCCATGCTCTCATCTTCAAGAGTGGACATGCTTCAAATTTATGTGTTCAGAATGGACTTGTTTCAATGTATGGAAGATGCGGTGCCATCCATGATGCAAAGTGGGTGTTTACTTTGATGAAAGAACATGATGTGGTCTCCTGGAATTCATTATTATCAGGTTATGCACATCATGGATTTGGGAAGGAGACTGTTGAATTGTTTGAGCAAATGAGAAGAACAGAGGTCAAACCAAATAATACCACCTTCCTGATTGTACTAACTGCCTGTAGCCATGTTGGTTTGTTGGACAAAGGGCTCGAGTATTTCAATCTAATGAGAAATGATGGTTTGCCTGAACCACCTAAGGTGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

335

Amino Acids

36.9

Weight (kDa)

6.21

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 78	8.6e-08	PPR repeat family
PPR	PF01535	46 - 75	6.5e-06	PPR repeat
PPR_2	PF13041	260 - 307	3.8e-12	PPR repeat family
PPR	PF01535	262 - 289	9.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008107)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23940 FvH4_1g23941
malus_domestica	MD11G1095500.v1.1
prunus_persica	Prupe.6G071000_v2.0.a1
pyrus_communis	pycom11g08090
rosa_chinensis	RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321
rosa_laevigata	RLG00000018506 RLG00000018509 RLG00000018742
rosa_multiflora	Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002
rosa_roxburghii	Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300
rosa_samantha	Rh2AG282900 Rh2BG294100 Rh3DG236700
rosa_wichuraiana	Rw2G022590 Rw2G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	731
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	2 cut(s)	233, 729
AcsI	RAATTY	2 cut(s)	685, 793
AcuI	CTGAAG	2 cut(s)	309, 560
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	2 cut(s)	71, 906
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	7 cut(s)	325, 381, 667, 684, 714, 845, 958
AjnI	CCWGG	1 cut(s)	788
AluBI	AGCT	7 cut(s)	173, 249, 287, 295, 302, 321, 536
AluI	AGCT	7 cut(s)	173, 249, 287, 295, 302, 321, 536
Alw21I	GWGCWC	4 cut(s)	58, 304, 312, 475
Alw26I	GTCTC	3 cut(s)	423, 790, 830
Alw44I	GTGCAC	2 cut(s)	308, 471
Ama87I	CYCGRG	1 cut(s)	947
AoxI	GGCC	2 cut(s)	29, 564
ApaLI	GTGCAC	2 cut(s)	308, 471
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	2 cut(s)	685, 793
Asp700I	GAANNNNTTC	2 cut(s)	107, 622
AspLEI	GCGC	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	947
AxyI	CCTNAGG	1 cut(s)	993
BaeGI	GKGCMC	2 cut(s)	312, 475
BanI	GGYRCC	1 cut(s)	731
BanII	GRGCYC	2 cut(s)	304, 948
BauI	CACGAG	1 cut(s)	51
Bbv12I	GWGCWC	4 cut(s)	58, 304, 312, 475
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	2 cut(s)	743, 968
BceAI	ACGGC	3 cut(s)	28, 88, 551
BciT130I	CCWGG	1 cut(s)	790
BcoDI	GTCTC	3 cut(s)	423, 790, 830
BfmI	CTRYAG	1 cut(s)	916
BisI	GCNGC	2 cut(s)	233, 612
BlsI	GCNGC	2 cut(s)	234, 613
Bme1390I	CCNGG	1 cut(s)	790
BmeT110I	CYCGRG	1 cut(s)	947
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	790
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	716, 733
BmuI	ACTGGG	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu10I	CCTNAGC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	291, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	469
Bse21I	CCTNAGG	1 cut(s)	993
Bse3DI	GCAATG	2 cut(s)	504, 515
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	2 cut(s)	504, 515
BseMII	CTCAG	2 cut(s)	176, 317
BseNI	ACTGG	1 cut(s)	469
BseSI	GKGCMC	2 cut(s)	312, 475
BseXI	GCAGC	1 cut(s)	623
BshFI	GGCC	2 cut(s)	31, 566
BshNI	GGYRCC	1 cut(s)	731
BsiHKAI	GWGCWC	4 cut(s)	58, 304, 312, 475
BsiHKCI	CYCGRG	1 cut(s)	947
BsiSI	CCGG	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	423, 790, 830
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	31, 566
Bso31I	GGTCTC	1 cut(s)	790
BsoBI	CYCGRG	1 cut(s)	947
Bsp1286I	GDGCHC	5 cut(s)	58, 304, 312, 475, 948
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	233, 729
BspANI	GGCC	2 cut(s)	31, 566
BspCNI	CTCAG	2 cut(s)	177, 316
BspLI	GGNNCC	1 cut(s)	733
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	790
BsrDI	GCAATG	2 cut(s)	504, 515
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	456
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	4 cut(s)	149, 279, 314, 841
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	171, 564
BstDEI	CTNAG	3 cut(s)	185, 303, 993
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	735
BstHHI	GCGC	1 cut(s)	275
BstMAI	GTCTC	3 cut(s)	423, 790, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 81, 572
BstNI	CCWGG	1 cut(s)	790
BstNSI	RCATGY	2 cut(s)	214, 680
BstSCI	CCNGG	1 cut(s)	788
BstSFI	CTRYAG	1 cut(s)	916
BstSLI	GKGCMC	2 cut(s)	312, 475
BstV1I	GCAGC	1 cut(s)	623
Bsu36I	CCTNAGG	1 cut(s)	993
BsuRI	GGCC	2 cut(s)	31, 566
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	171, 564
CfoI	GCGC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	70, 905
CviQI	GTAC	2 cut(s)	70, 905
DdeI	CTNAG	3 cut(s)	185, 303, 993
DraIII	CACNNNGTG	1 cut(s)	479
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	304, 948
Eco31I	GGTCTC	1 cut(s)	790
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	309, 560
Eco81I	CCTNAGG	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	947
EcoICRI	GAGCTC	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	304, 948
ErhI	CCWWGG	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	233, 612
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	2 cut(s)	304, 948
Fsp4HI	GCNGC	2 cut(s)	233, 612
FspI	TGCGCA	1 cut(s)	274
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	233, 612
HaeIII	GGCC	2 cut(s)	31, 566
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	401
HpaII	CCGG	1 cut(s)	521
Hpy166II	GTNNAC	4 cut(s)	310, 473, 674, 759
Hpy188I	TCNGA	5 cut(s)	224, 490, 540, 553, 699
Hpy188III	TCNNGA	3 cut(s)	206, 667, 898
Hpy8I	GTNNAC	4 cut(s)	310, 473, 674, 759
Hpy99I	CGWCG	4 cut(s)	65, 116, 241, 244
HpyAV	CCTTC	3 cut(s)	97, 826, 904
HpyCH4III	ACNGT	4 cut(s)	149, 279, 314, 841
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	169, 310, 473, 746, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 81, 572
HpyF3I	CTNAG	3 cut(s)	185, 303, 993
HpySE526I	ACGT	1 cut(s)	242
HspAI	GCGC	1 cut(s)	273
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	299, 1000
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	2 cut(s)	716, 733
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	136, 442, 460
MboII	GAAGA	4 cut(s)	302, 655, 735, 876
MhlI	GDGCHC	5 cut(s)	58, 304, 312, 475, 948
MluCI	AATT	3 cut(s)	685, 793, 845
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	202, 915
MnlI	CCTC	7 cut(s)	17, 132, 487, 523, 552, 631, 865
MroXI	GAANNNNTTC	2 cut(s)	107, 622
MseI	TTAA	4 cut(s)	17, 215, 417, 605
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	790
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	790
MwoI	GCNNNNNNNGC	3 cut(s)	72, 81, 572
NcoI	CCATGG	1 cut(s)	456
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	2 cut(s)	136, 442
NsbI	TGCGCA	1 cut(s)	274
NspI	RCATGY	2 cut(s)	214, 680
PaeR7I	CTCGAG	1 cut(s)	947
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	107, 622
PflMI	CCANNNNNTGG	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	788
PkrI	GCNGC	2 cut(s)	234, 613
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PscI	ACATGT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	1 cut(s)	733
PspXI	VCTCGAGB	1 cut(s)	947
RsaI	GTAC	2 cut(s)	71, 906
RsaNI	GTAC	2 cut(s)	70, 905
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	17, 215, 417, 605
SatI	GCNGC	2 cut(s)	233, 612
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	790
SduI	GDGCHC	5 cut(s)	58, 304, 312, 475, 948
SfaNI	GCATC	2 cut(s)	716, 733
SfcI	CTRYAG	1 cut(s)	916
Sfr274I	CTCGAG	1 cut(s)	947
SlaI	CTCGAG	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	3 cut(s)	685, 793, 845
SsiI	CCGC	2 cut(s)	233, 729
SspI	AATATT	1 cut(s)	439
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	4 cut(s)	149, 279, 314, 841
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	111, 948
TasI	AATT	3 cut(s)	685, 793, 845
TatI	WGTACW	1 cut(s)	904
TauI	GCSGC	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	17, 215, 417, 605
Tru9I	TTAA	4 cut(s)	17, 215, 417, 605
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	136, 442
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	2 cut(s)	136, 442
TspDTI	ATGAA	2 cut(s)	782, 786
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	27
VneI	GTGCAC	2 cut(s)	308, 471
XapI	RAATTY	2 cut(s)	685, 793
XceI	RCATGY	2 cut(s)	214, 680
XhoI	CTCGAG	1 cut(s)	947
XmnI	GAANNNNTTC	2 cut(s)	107, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.