Rh3DG236700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0008107
Physical Location & Seq
Forward (+)
22652855 .. 22653472
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG236700.1

Sequence Viewer

Length: 618 bp
ATGCGAGACAGGAATGTTGTGACATGGACTTCGATGGTTACTGGGTGTGCGCAGAGTGGGCAGTCTGATGAGGCAATGACTTTGGTGAAAGAAATGCTGCTGTTGGGTCTCAAGCCGAATTATGTTACTTATAATAGTTTGTTGAGTTCATTTGCTAGCATGGACTTTTGGGATTGTTGCAGACAAATCCATTGCCGGATAGTGAAAGAAGGGTTTGATTCCAACGTGTATACTGTGGTTACCCTTTTGACCGTATATTCAGAGTCTAATAGTAGCTCGGAGGATTTCCGTGCGCTTTGCTCGTGTGTTTCAGTGTGGGATCAAATCTCGTGGAATGCAGTAATTGCGGGTTTTTGTAATATTGGGAGCAGTGAGGAAGCTCTGAAGTGTTTCTCTGAAATGAGGCAGGCCGGTGTTGCTGTGGATTTTTTCTCATTTGCAAGCATTTTAAGAGCAGCAGGAACCCTTTCAGCACTTGTAGAGGGAAAGAAAATCCATGCTCTCATCTTCAAGAGTGGACAACTGGACATGCTTCAAATTTATGTGTTCAGAATGGGCTTGTTTCAATGTATGGAAGATGCGGTGCCATCCATGATGCAAAGCGGGTGTTTACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

205

Amino Acids

22.73

Weight (kDa)

5.01

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 4 - 52 1.3e-12 PPR repeat family
PPR_3 PF13812 5 - 51 3.1e-08 Pentatricopeptide repeat domain
PPR PF01535 7 - 36 1.2e-07 PPR repeat
PPR_long PF17177 7 - 90 2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 107 - 152 8.5e-10 PPR repeat family
PPR PF01535 109 - 139 8.7e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
Acc16I TGCGCA 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 583
AccI GTMKAC 1 cut(s) 230
AciI CCGC 3 cut(s) 347, 581, 603
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 3 cut(s) 511, 536, 566
AluBI AGCT 2 cut(s) 276, 380
AluI AGCT 2 cut(s) 276, 380
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 327
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 2 cut(s) 97, 455
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
Asp700I GAANNNNTTC 2 cut(s) 389, 466
AspLEI GCGC 2 cut(s) 52, 295
AsuHPI GGTGA 1 cut(s) 97
AsuNHI GCTAGC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 583
BauI CACGAG 2 cut(s) 301, 328
BbvI GCAGC 2 cut(s) 84, 467
BccI CCATC 2 cut(s) 28, 595
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 98, 456
BlsI GCNGC 2 cut(s) 99, 457
BmiI GGNNCC 2 cut(s) 463, 585
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 568, 585
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 46, 528
Bse3DI GCAATG 2 cut(s) 81, 190
BseGI GGATG 1 cut(s) 587
BseMI GCAATG 2 cut(s) 81, 190
BseNI ACTGG 2 cut(s) 46, 528
BseXI GCAGC 2 cut(s) 84, 467
BshFI GGCC 1 cut(s) 410
BshNI GGYRCC 1 cut(s) 583
BsiSI CCGG 2 cut(s) 196, 411
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 410
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 3 cut(s) 347, 581, 603
BspANI GGCC 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 463, 585
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 583
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 2 cut(s) 81, 190
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 2 cut(s) 46, 528
BssAI RCCGGY 1 cut(s) 410
BssMI GATC 1 cut(s) 319
BssNAI GTATAC 1 cut(s) 231
BssSI CACGAG 2 cut(s) 301, 328
Bst1107I GTATAC 1 cut(s) 231
Bst2BI CACGAG 2 cut(s) 301, 328
Bst4CI ACNGT 2 cut(s) 235, 253
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 157, 408, 442
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 1 cut(s) 587
BstHHI GCGC 2 cut(s) 52, 295
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 58, 344, 416
BstNSI RCATGY 1 cut(s) 532
BstPI GGTNACC 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 84, 467
BstZ17I GTATAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 587
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 318, 376
Cac8I GCNNGC 3 cut(s) 157, 408, 442
CfoI GCGC 2 cut(s) 52, 295
Cfr10I RCCGGY 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 5 cut(s) 24, 160, 497, 529, 592
CviJI RGCY 5 cut(s) 115, 276, 380, 410, 558
CviKI_1 RGCY 5 cut(s) 115, 276, 380, 410, 558
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 404
Eco91I GGTNACC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 238
FaeI CATG 5 cut(s) 27, 163, 500, 532, 595
FatI CATG 5 cut(s) 23, 159, 496, 528, 591
FauI CCCGC 2 cut(s) 340, 596
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 98, 456
FokI GGATG 1 cut(s) 574
Fsp4HI GCNGC 2 cut(s) 98, 456
FspBI CTAG 1 cut(s) 156
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 2 cut(s) 51, 294
GluI GCNGC 2 cut(s) 98, 456
HaeIII GGCC 1 cut(s) 410
HapII CCGG 2 cut(s) 196, 411
HhaI GCGC 2 cut(s) 52, 295
Hin1II CATG 5 cut(s) 27, 163, 500, 532, 595
Hin6I GCGC 2 cut(s) 50, 293
HinP1I GCGC 2 cut(s) 50, 293
HinfI GANTC 2 cut(s) 218, 263
HpaII CCGG 2 cut(s) 196, 411
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 3 cut(s) 231, 518, 611
Hpy188I TCNGA 6 cut(s) 67, 262, 280, 384, 397, 551
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 3 cut(s) 231, 518, 611
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 235, 253
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 180, 338, 440, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 344, 416
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 5 cut(s) 27, 163, 500, 532, 595
HspAI GCGC 2 cut(s) 50, 293
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 366
LpnPI CCDG 6 cut(s) 27, 209, 392, 424, 444, 509
Lsp1109I GCAGC 2 cut(s) 84, 467
LweI GCATC 2 cut(s) 568, 585
MaeI CTAG 1 cut(s) 156
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 4 cut(s) 19, 37, 124, 238
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 2 cut(s) 499, 587
MluCI AATT 3 cut(s) 118, 342, 537
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 64, 274, 367, 396, 475
MroXI GAANNNNTTC 2 cut(s) 389, 466
MseI TTAA 1 cut(s) 449
MspI CCGG 2 cut(s) 196, 411
Mva1269I GAATGC 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 58, 344, 416
NdeII GATC 1 cut(s) 319
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 27, 163, 500, 532, 595
NlaIV GGNNCC 2 cut(s) 463, 585
NmuCI GTSAC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 51
NspI RCATGY 1 cut(s) 532
PctI GAATGC 1 cut(s) 340
PdmI GAANNNNTTC 2 cut(s) 389, 466
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 99, 457
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 463, 585
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 2 cut(s) 98, 456
Sau3AI GATC 1 cut(s) 319
SchI GAGTC 1 cut(s) 272
SetI ASST 3 cut(s) 228, 278, 382
SfaNI GCATC 2 cut(s) 568, 585
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 118, 342, 537
SsiI CCGC 3 cut(s) 347, 581, 603
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 235, 253
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 32
TasI AATT 3 cut(s) 118, 342, 537
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 2 cut(s) 318, 376
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 97, 455
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 318, 376
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 230
XmnI GAANNNNTTC 2 cut(s) 389, 466
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.