Rroxscaffold_5G00352290

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008107
Physical Location & Seq
Forward (+)
29293962 .. 29294279
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352290.1

Sequence Viewer

Length: 318 bp
ATGTGCGCGAGTGGGCGATCCGATGAGGCAATGACTTTAGTGAGAGAAATGCCGTTGTTGGGTCTCAAGCCGAATTATGCTACTTATAATAGTTTGTTGAGTTCATTTACTAGCATGGACTTTTGGGCTTGTTGCAGGCAAATCCATTGCCGGATAGTGAAAGAAGGGTTTGATTCCAATGTGTATATTGTGGTTACCCTTTTGACCTTATATTCGCAGTCCGATAGTAGCTTGAAGGACTTCGTGCGCTTTGCTCATGTGTTTCGGTGTGGGATCAAATCTCATGGAATAGCAGAAGAGGTGAGTATTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

6.8

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 1 - 36 2e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AccII CGCG 1 cut(s) 8
AclWI GGATC 2 cut(s) 12, 281
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 2 cut(s) 12, 281
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 2 cut(s) 8, 249
AsuHPI GGTGA 1 cut(s) 313
BceAI ACGGC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse3DI GCAATG 2 cut(s) 36, 145
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 2 cut(s) 36, 145
Bsh1236I CGCG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 17, 273
BspFNI CGCG 1 cut(s) 8
BspPI GGATC 2 cut(s) 12, 281
BspTNI GGTCTC 1 cut(s) 68
BsrDI GCAATG 2 cut(s) 36, 145
BssMI GATC 2 cut(s) 17, 273
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 193
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 2 cut(s) 8, 249
BstKTI GATC 2 cut(s) 20, 276
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 2 cut(s) 17, 273
BstPI GGTNACC 1 cut(s) 193
BstUI CGCG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 2 cut(s) 8, 249
CviAII CATG 3 cut(s) 115, 257, 284
CviJI RGCY 3 cut(s) 70, 128, 231
CviKI_1 RGCY 3 cut(s) 70, 128, 231
DpnI GATC 2 cut(s) 19, 275
DpnII GATC 2 cut(s) 17, 273
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
FaeI CATG 3 cut(s) 118, 260, 287
FaiI YATR 7 cut(s) 78, 87, 116, 186, 211, 258, 285
FatI CATG 3 cut(s) 114, 256, 283
FspBI CTAG 1 cut(s) 111
GlaI GCGC 2 cut(s) 7, 248
HapII CCGG 1 cut(s) 151
HhaI GCGC 2 cut(s) 8, 249
Hin1II CATG 3 cut(s) 118, 260, 287
Hin6I GCGC 2 cut(s) 6, 247
HinP1I GCGC 2 cut(s) 6, 247
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 22, 223
HpyAV CCTTC 2 cut(s) 158, 229
HpyCH4V TGCA 1 cut(s) 135
Hsp92II CATG 3 cut(s) 118, 260, 287
HspAI GCGC 2 cut(s) 6, 247
Kzo9I GATC 2 cut(s) 17, 273
LpnPI CCDG 2 cut(s) 121, 164
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 19, 275
MboI GATC 2 cut(s) 17, 273
MboII GAAGA 1 cut(s) 308
MluCI AATT 1 cut(s) 73
MnlI CCTC 2 cut(s) 19, 292
MroXI GAANNNNTTC 1 cut(s) 239
MspI CCGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 8
NdeII GATC 2 cut(s) 17, 273
NlaIII CATG 3 cut(s) 118, 260, 287
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 173
PsiI TTATAA 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 193
Sau3AI GATC 2 cut(s) 17, 273
SetI ASST 3 cut(s) 209, 233, 303
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 111
TasI AATT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.