Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006369.1

Orthogroup ID

OG0008107

Physical Location & Seq

Genomic Coordinates Forward (+)

1641 .. 1979

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgtacggcaaatgtggcaagtcgtggaatgcccagaaggtgttcgacgaaacgcctcccagaaatgtaatgacttggaactctttgatttctggtaatttgcaagctggttcgccactcagagcaactcgtttgtttctggacatgttaaaggtcggaacagaaccgccgacgacgttcagcttttcgggggtgttggtgtgttgcgcacagttagaagctgaagagcttggagctcaggtgcatggtttgggcttgaaatgtgggatttgtgatgatgttgtaaggttagagagtcatggcgggtgtttaatcaaatgcgagacaggaatgttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

112

Amino Acids

12.08

Weight (kDa)

6.06

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008107)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23940 FvH4_1g23941
malus_domestica	MD11G1095500.v1.1
prunus_persica	Prupe.6G071000_v2.0.a1
pyrus_communis	pycom11g08090
rosa_chinensis	RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321
rosa_laevigata	RLG00000018506 RLG00000018509 RLG00000018742
rosa_multiflora	Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002
rosa_roxburghii	Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300
rosa_samantha	Rh2AG282900 Rh2BG294100 Rh3DG236700
rosa_wichuraiana	Rw2G022590 Rw2G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	208
AciI	CCGC	2 cut(s)	167, 303
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	5 cut(s)	107, 183, 221, 229, 236
AluI	AGCT	5 cut(s)	107, 183, 221, 229, 236
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
BseMII	CTCAG	2 cut(s)	133, 251
BsiHKAI	GWGCWC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	167, 303
BspCNI	CTCAG	2 cut(s)	132, 250
BspQI	GCTCTTC	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	119, 237
BstHHI	GCGC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	145, 245, 299
CviJI	RGCY	6 cut(s)	107, 183, 221, 229, 236, 255
CviKI_1	RGCY	6 cut(s)	107, 183, 221, 229, 236, 255
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	119, 237
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	3 cut(s)	148, 248, 302
FaiI	YATR	3 cut(s)	146, 246, 300
FatI	CATG	3 cut(s)	144, 244, 298
FauI	CCCGC	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	238
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	148, 248, 302
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	122, 158
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	3 cut(s)	50, 175, 178
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	103, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	2 cut(s)	119, 237
HpySE526I	ACGT	1 cut(s)	176
Hsp92II	CATG	3 cut(s)	148, 248, 302
HspAI	GCGC	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	47, 73, 78, 93, 125, 224, 312
MaeII	ACGT	1 cut(s)	176
MboII	GAAGA	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	2 cut(s)	149, 311
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	15
NlaIII	CATG	3 cut(s)	148, 248, 302
NsbI	TGCGCA	1 cut(s)	208
NspI	RCATGY	1 cut(s)	148
PciI	ACATGT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PscI	ACATGT	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	149, 311
SchI	GAGTC	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	238
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	167, 303
SstI	GAGCTC	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	149, 311
Tru9I	TTAA	2 cut(s)	149, 311
XceI	RCATGY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.