Rmu_sc0000657.1_g000021

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000657.1
Physical Location & Seq
Forward (+)
57420 .. 59186
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000657.1_g000021.1.cds

Sequence Viewer

Length: 1767 bp
atgacaatgacccagaagctatcaaaactagttggtttggacctcttgtctgggtcttcaccaacccctcaaaacctcaccaaaatcatatctttctgcgcaaaatcggcttctttcgatgtgggtagcgccattcacgccattgttatcaagttgggtttttgttcgaatgtctatatatgcagtgctctcgtcgacgtgtacggcaaatgtggcgagtcgtggaatgcccagaaggtgttcgacgaaacgcctcacagcaatgtagtgacttggaactctttgatttctggttatttgcaagctggttcgccactgagagcaactcgtttgtttctggacatgttaagggtcggaacagagccgccgacgacgttcagcttttcgggggtgttggtgtgttgcgcacagttagaagctgaagagcttggagctcaggtgcacggtttgagcttgaaaatggggatttgtgatgatgttgtggtgggaacaggattgatagatatgtattcaaagtgttgtaaggtcagagagtcatggcgggtgtttaatcaaatgcgagacaagaatgttgtgacatggacttccatggttactgggtgtgcacagagtgggcagtctgatgaggcaatgactttagtgagagaaatgctgaggttgggtctcaagcctaattatgtcacttataatagtttgttgagttcatttgctagaatggacttttgggattgttgcaggcaaatccattcccggatagtgaaagaagggtttgattccaacgtgtatattgtggttacccttttgaccttatattcagagtctaatagtagcttggaggacttccgtgcgctttgctcatgtgtttcagtgtgggatcaaatctcatggaatgcagtaattgcgggtttttgtaatattgggagcagtgaggaagctctgaagtgtttctctgaaatgaggcaggccggtgttgctgtggattttttcacatttacaagcattttaagagcagcaggaactctttcagcacttgtagagggaaagaaaatccatgctctcatcttcaagagtggacatgcttcaaatttatgtgttcaaaatgggcttgtttcaatgtatggaagatgcggtgccatccatgatgcaaagtgggtgtttactttgatgaaagaacatgatgtggtctcctggaattcattattatcaggttatgcacatcatggatttgggaaggaaactgttgaattgtttgagcaaatgagaagaacagaggtcaaaccaaataataccaccttcctaattgtactaactgcctgtagccatgttggtttgttggacaaagggctcgagtatttcaatctaatgagaaattatgatttgcctgaaccacccaaggtggagcattacgctaccgttgttgatctttttggtcgggctggaaaccttcacgaagcggaagccttcgtcaatagcatgcccatagagccaggtgtctcagtatacaaagctctacttagtgcgtgccaagttcatggaaacagagaacttgctcttcgttctgcaacaaagcttcaacaactgtgcccaaatgatcctgcaacttacatactgctatcaaatgtgttgttgacaagaggctcctgggatgatgcagcagaagtacggaagcacatgtatgatagaggaataagaataactcctggttatagttggatacattcaacattacaatatgaagaaaaggtggatacaacttttaagatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

588

Amino Acids

65.21

Weight (kDa)

6.47

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
Acc16I TGCGCA 2 cut(s) 100, 406
AccB1I GGYRCC 1 cut(s) 1130
AccI GTMKAC 2 cut(s) 195, 1500
AciI CCGC 5 cut(s) 365, 541, 902, 1128, 1454
AclWI GGATC 2 cut(s) 882, 1586
AcsI RAATTY 2 cut(s) 1084, 1192
AcuI CTGAAG 2 cut(s) 441, 959
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 3 cut(s) 203, 1305, 1662
AflIII ACRYGT 4 cut(s) 198, 342, 780, 1671
AhdI GACNNNNNGTC 1 cut(s) 46
AhlI ACTAGT 1 cut(s) 28
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 4 cut(s) 1187, 1486, 1640, 1699
AjuI GAANNNNNNNTTGG 2 cut(s) 706, 738
Alw21I GWGCWC 4 cut(s) 190, 436, 444, 607
Alw26I GTCTC 4 cut(s) 555, 668, 1189, 1498
Alw44I GTGCAC 2 cut(s) 440, 603
AlwI GGATC 2 cut(s) 882, 1586
Ama87I CYCGRG 1 cut(s) 1346
AoxI GGCC 1 cut(s) 963
ApaLI GTGCAC 2 cut(s) 440, 603
ApeKI GCWGC 2 cut(s) 1010, 1652
ApoI RAATTY 2 cut(s) 1084, 1192
Asp700I GAANNNNTTC 3 cut(s) 239, 944, 1021
AspLEI GCGC 4 cut(s) 101, 131, 407, 850
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 2 cut(s) 51, 70
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 1346
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 3 cut(s) 444, 607, 1586
BanI GGYRCC 1 cut(s) 1130
BanII GRGCYC 2 cut(s) 436, 1347
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 4 cut(s) 190, 436, 444, 607
BbvCI CCTCAGC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 1022, 1664
BccI CCATC 1 cut(s) 1142
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 4 cut(s) 1189, 1488, 1642, 1701
BciVI GTATCC 2 cut(s) 1707, 1741
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 4 cut(s) 555, 668, 1189, 1498
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 2 cut(s) 29, 711
BfmI CTRYAG 1 cut(s) 1315
BfoI RGCGCY 1 cut(s) 132
BfuI GTATCC 2 cut(s) 1707, 1741
BisI GCNGC 3 cut(s) 365, 1011, 1653
BlsI GCNGC 3 cut(s) 366, 1012, 1654
Bme1390I CCNGG 5 cut(s) 751, 1189, 1488, 1642, 1701
Bme18I GGWCC 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 1346
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 1132, 1639
BmrFI CCNGG 5 cut(s) 751, 1189, 1488, 1642, 1701
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 3 cut(s) 1115, 1132, 1639
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu10I CCTNAGC 2 cut(s) 435, 653
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 1 cut(s) 751
BsaI GGTCTC 2 cut(s) 668, 1189
BsaJI CCNNGG 3 cut(s) 588, 1392, 1641
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bse118I RCCGGY 1 cut(s) 965
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 2 cut(s) 268, 636
BseBI CCWGG 4 cut(s) 1189, 1488, 1642, 1701
BseDI CCNNGG 3 cut(s) 588, 1392, 1641
BseGI GGATG 2 cut(s) 1134, 1651
BseMI GCAATG 2 cut(s) 268, 636
BseMII CTCAG 4 cut(s) 308, 449, 644, 1509
BseNI ACTGG 1 cut(s) 601
BseSI GKGCMC 3 cut(s) 444, 607, 1586
BseXI GCAGC 2 cut(s) 1022, 1664
BshFI GGCC 1 cut(s) 965
BshNI GGYRCC 1 cut(s) 1130
BsiHKAI GWGCWC 4 cut(s) 190, 436, 444, 607
BsiHKCI CYCGRG 1 cut(s) 1346
BsiSI CCGG 2 cut(s) 751, 966
BsmAI GTCTC 4 cut(s) 555, 668, 1189, 1498
BsmI GAATGC 2 cut(s) 232, 895
BsnI GGCC 1 cut(s) 965
Bso31I GGTCTC 2 cut(s) 668, 1189
BsoBI CYCGRG 1 cut(s) 1346
Bsp119I TTCGAA 1 cut(s) 167
Bsp1286I GDGCHC 6 cut(s) 190, 436, 444, 607, 1347, 1586
Bsp143I GATC 3 cut(s) 874, 1420, 1591
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 5 cut(s) 365, 541, 902, 1128, 1454
BspANI GGCC 1 cut(s) 965
BspCNI CTCAG 4 cut(s) 309, 448, 645, 1508
BspLI GGNNCC 2 cut(s) 1132, 1639
BspPI GGATC 2 cut(s) 882, 1586
BspQI GCTCTTC 2 cut(s) 417, 1557
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 1130
BspTNI GGTCTC 2 cut(s) 668, 1189
BsrDI GCAATG 2 cut(s) 268, 636
BsrFI RCCGGY 1 cut(s) 965
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 965
BssECI CCNNGG 3 cut(s) 588, 1392, 1641
BssMI GATC 3 cut(s) 874, 1420, 1591
BssNAI GTATAC 1 cut(s) 1501
BssT1I CCWWGG 2 cut(s) 588, 1392
Bst1107I GTATAC 1 cut(s) 1501
Bst2UI CCWGG 4 cut(s) 1189, 1488, 1642, 1701
Bst4CI ACNGT 5 cut(s) 411, 446, 1240, 1414, 1581
Bst6I CTCTTC 2 cut(s) 417, 1557
BstAPI GCANNNNNTGC 1 cut(s) 899
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 5 cut(s) 303, 737, 963, 1475, 1522
BstDEI CTNAG 5 cut(s) 317, 435, 653, 1495, 1514
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 793
BstF5I GGATG 2 cut(s) 1134, 1651
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 4 cut(s) 101, 131, 407, 850
BstKTI GATC 3 cut(s) 877, 1423, 1594
BstMAI GTCTC 4 cut(s) 555, 668, 1189, 1498
BstMBI GATC 3 cut(s) 874, 1420, 1591
BstMWI GCNNNNNNNGC 6 cut(s) 107, 137, 213, 899, 971, 1483
BstNI CCWGG 4 cut(s) 1189, 1488, 1642, 1701
BstNSI RCATGY 4 cut(s) 346, 1079, 1477, 1675
BstPI GGTNACC 1 cut(s) 793
BstSCI CCNGG 5 cut(s) 749, 1187, 1486, 1640, 1699
BstSFI CTRYAG 1 cut(s) 1315
BstSLI GKGCMC 3 cut(s) 444, 607, 1586
BstV1I GCAGC 2 cut(s) 1022, 1664
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 1532
BstZ17I GTATAC 1 cut(s) 1501
BsuI GTATCC 2 cut(s) 1707, 1741
BsuRI GGCC 1 cut(s) 965
BtgI CCRYGG 1 cut(s) 588
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 1134, 1651
BtsI GCAGTG 2 cut(s) 190, 931
BtsIMutI CAGTG 4 cut(s) 190, 314, 873, 931
Cac8I GCNNGC 5 cut(s) 303, 737, 963, 1475, 1522
CfoI GCGC 4 cut(s) 101, 131, 407, 850
Cfr10I RCCGGY 1 cut(s) 965
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 202, 1304, 1661
CviQI GTAC 3 cut(s) 202, 1304, 1661
DdeI CTNAG 5 cut(s) 317, 435, 653, 1495, 1514
DpnI GATC 3 cut(s) 876, 1422, 1593
DpnII GATC 3 cut(s) 874, 1420, 1591
DraIII CACNNNGTG 1 cut(s) 611
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 417, 1557
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 2 cut(s) 417, 1557
Ecl136II GAGCTC 1 cut(s) 434
Eco130I CCWWGG 2 cut(s) 588, 1392
Eco24I GRGCYC 2 cut(s) 436, 1347
Eco31I GGTCTC 2 cut(s) 668, 1189
Eco47I GGWCC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 441, 959
Eco88I CYCGRG 1 cut(s) 1346
Eco91I GGTNACC 1 cut(s) 793
EcoICRI GAGCTC 1 cut(s) 434
EcoO65I GGTNACC 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 1192
EcoRII CCWGG 4 cut(s) 1187, 1486, 1640, 1699
EcoT14I CCWWGG 2 cut(s) 588, 1392
EcoT38I GRGCYC 2 cut(s) 436, 1347
ErhI CCWWGG 2 cut(s) 588, 1392
FalI AAGNNNNNCTT 2 cut(s) 1497, 1529
FauI CCCGC 2 cut(s) 534, 895
FblI GTMKAC 2 cut(s) 195, 1500
Fnu4HI GCNGC 3 cut(s) 365, 1011, 1653
FokI GGATG 2 cut(s) 1121, 1658
FriOI GRGCYC 2 cut(s) 436, 1347
Fsp4HI GCNGC 3 cut(s) 365, 1011, 1653
FspBI CTAG 2 cut(s) 29, 711
FspI TGCGCA 2 cut(s) 100, 406
GlaI GCGC 4 cut(s) 100, 130, 406, 849
GluI GCNGC 3 cut(s) 365, 1011, 1653
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 965
HapII CCGG 2 cut(s) 751, 966
HhaI GCGC 4 cut(s) 101, 131, 407, 850
Hin6I GCGC 4 cut(s) 99, 129, 405, 848
HinP1I GCGC 4 cut(s) 99, 129, 405, 848
HincII GTYRAC 2 cut(s) 196, 1629
HindII GTYRAC 2 cut(s) 196, 1629
HindIII AAGCTT 1 cut(s) 1568
HinfI GANTC 4 cut(s) 218, 533, 773, 818
HpaII CCGG 2 cut(s) 751, 966
HphI GGTGA 2 cut(s) 51, 70
Hpy166II GTNNAC 8 cut(s) 196, 202, 442, 605, 1073, 1158, 1501, 1629
Hpy188I TCNGA 6 cut(s) 356, 530, 622, 817, 939, 952
Hpy188III TCNNGA 3 cut(s) 338, 1066, 1448
Hpy8I GTNNAC 8 cut(s) 196, 202, 442, 605, 1073, 1158, 1501, 1629
Hpy99I CGWCG 5 cut(s) 197, 200, 248, 373, 376
HpyAV CCTTC 6 cut(s) 229, 758, 1225, 1303, 1454, 1471
HpyCH4III ACNGT 5 cut(s) 411, 446, 1240, 1414, 1581
HpyCH4IV ACGT 3 cut(s) 198, 374, 780
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 137, 213, 899, 971, 1483
HpyF3I CTNAG 5 cut(s) 317, 435, 653, 1495, 1514
HpySE526I ACGT 3 cut(s) 198, 374, 780
HspAI GCGC 4 cut(s) 99, 129, 405, 848
Kzo9I GATC 3 cut(s) 874, 1420, 1591
LguI GCTCTTC 2 cut(s) 417, 1557
LmnI GCTCC 4 cut(s) 431, 921, 1399, 1643
Lsp1109I GCAGC 2 cut(s) 1022, 1664
LweI GCATC 3 cut(s) 1115, 1132, 1639
MaeI CTAG 2 cut(s) 29, 711
MaeII ACGT 3 cut(s) 198, 374, 780
MaeIII GTNAC 5 cut(s) 268, 574, 592, 679, 793
MalI GATC 3 cut(s) 876, 1422, 1593
MboI GATC 3 cut(s) 874, 1420, 1591
MboII GAAGA 7 cut(s) 48, 434, 1054, 1134, 1275, 1544, 1748
MhlI GDGCHC 6 cut(s) 190, 436, 444, 607, 1347, 1586
MluCI AATT 7 cut(s) 673, 897, 1084, 1192, 1244, 1299, 1369
MlyI GAGTC 3 cut(s) 227, 542, 827
MmeI TCCRAC 4 cut(s) 334, 801, 1314, 1691
MroXI GAANNNNTTC 3 cut(s) 239, 944, 1021
MseI TTAA 4 cut(s) 347, 549, 1004, 1758
MslI CAYNNNNRTG 2 cut(s) 261, 1674
MspI CCGG 2 cut(s) 751, 966
MspR9I CCNGG 5 cut(s) 751, 1189, 1488, 1642, 1701
Mva1269I GAATGC 2 cut(s) 232, 895
MvaI CCWGG 4 cut(s) 1189, 1488, 1642, 1701
MwoI GCNNNNNNNGC 6 cut(s) 107, 137, 213, 899, 971, 1483
NciI CCSGG 1 cut(s) 751
NcoI CCATGG 1 cut(s) 588
NdeII GATC 3 cut(s) 874, 1420, 1591
NlaIV GGNNCC 2 cut(s) 1132, 1639
NmuCI GTSAC 3 cut(s) 268, 574, 679
NsbI TGCGCA 2 cut(s) 100, 406
NspI RCATGY 4 cut(s) 346, 1079, 1477, 1675
NspV TTCGAA 1 cut(s) 167
PaeI GCATGC 1 cut(s) 1477
PaeR7I CTCGAG 1 cut(s) 1346
PciI ACATGT 2 cut(s) 342, 1671
PciSI GCTCTTC 2 cut(s) 417, 1557
PctI GAATGC 2 cut(s) 232, 895
PdmI GAANNNNTTC 3 cut(s) 239, 944, 1021
PfeI GAWTC 1 cut(s) 773
PfoI TCCNGGA 2 cut(s) 749, 1187
PkrI GCNGC 3 cut(s) 366, 1012, 1654
PleI GAGTC 3 cut(s) 226, 541, 826
PpsI GAGTC 3 cut(s) 226, 541, 826
PscI ACATGT 2 cut(s) 342, 1671
PsiI TTATAA 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 4 cut(s) 1187, 1486, 1640, 1699
PspEI GGTNACC 1 cut(s) 793
PspGI CCWGG 4 cut(s) 1187, 1486, 1640, 1699
PspN4I GGNNCC 2 cut(s) 1132, 1639
PspPI GGNCC 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 1346
RsaI GTAC 3 cut(s) 203, 1305, 1662
RsaNI GTAC 3 cut(s) 202, 1304, 1661
RseI CAYNNNNRTG 2 cut(s) 261, 1674
SacI GAGCTC 1 cut(s) 436
SalI GTCGAC 1 cut(s) 194
SapI GCTCTTC 2 cut(s) 417, 1557
SaqAI TTAA 4 cut(s) 347, 549, 1004, 1758
SatI GCNGC 3 cut(s) 365, 1011, 1653
Sau3AI GATC 3 cut(s) 874, 1420, 1591
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 3 cut(s) 227, 542, 827
ScrFI CCNGG 5 cut(s) 751, 1189, 1488, 1642, 1701
SduI GDGCHC 6 cut(s) 190, 436, 444, 607, 1347, 1586
SfaNI GCATC 3 cut(s) 1115, 1132, 1639
SfcI CTRYAG 1 cut(s) 1315
Sfr274I CTCGAG 1 cut(s) 1346
SfuI TTCGAA 1 cut(s) 167
SgrDI CGTCGACG 1 cut(s) 194
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 1346
SmiMI CAYNNNNRTG 2 cut(s) 261, 1674
SmlI CTYRAG 2 cut(s) 665, 1346
SmoI CTYRAG 2 cut(s) 665, 1346
SpeI ACTAGT 1 cut(s) 28
SphI GCATGC 1 cut(s) 1477
Sse9I AATT 7 cut(s) 673, 897, 1084, 1192, 1244, 1299, 1369
SsiI CCGC 5 cut(s) 365, 541, 902, 1128, 1454
SspI AATATT 1 cut(s) 916
SspMI CTAG 2 cut(s) 29, 711
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 5 cut(s) 749, 1187, 1486, 1640, 1699
StyI CCWWGG 2 cut(s) 588, 1392
TaaI ACNGT 5 cut(s) 411, 446, 1240, 1414, 1581
TaiI ACGT 3 cut(s) 201, 377, 783
TaqI TCGA 5 cut(s) 117, 167, 195, 243, 1347
TasI AATT 7 cut(s) 673, 897, 1084, 1192, 1244, 1299, 1369
TatI WGTACW 1 cut(s) 1303
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 1 cut(s) 773
Tru1I TTAA 4 cut(s) 347, 549, 1004, 1758
Tru9I TTAA 4 cut(s) 347, 549, 1004, 1758
TscAI CASTG 4 cut(s) 190, 321, 873, 931
TseFI GTSAC 3 cut(s) 268, 574, 679
TseI GCWGC 2 cut(s) 1010, 1652
Tsp45I GTSAC 3 cut(s) 268, 574, 679
TspDTI ATGAA 5 cut(s) 693, 1181, 1185, 1520, 1749
TspGWI ACGGA 2 cut(s) 833, 1678
TspRI CASTG 4 cut(s) 190, 321, 873, 931
VneI GTGCAC 2 cut(s) 440, 603
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 2 cut(s) 1084, 1192
XceI RCATGY 4 cut(s) 346, 1079, 1477, 1675
XhoI CTCGAG 1 cut(s) 1346
XmiI GTMKAC 2 cut(s) 195, 1500
XmnI GAANNNNTTC 3 cut(s) 239, 944, 1021
XspI CTAG 2 cut(s) 29, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.