Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g23940 FvH4_1g23941 |
| malus_domestica | MD11G1095500.v1.1 |
| prunus_persica | Prupe.6G071000_v2.0.a1 |
| pyrus_communis | pycom11g08090 |
| rosa_chinensis | RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321 |
| rosa_laevigata | RLG00000018506 RLG00000018509 RLG00000018742 |
| rosa_multiflora | Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300 |
| rosa_samantha | Rh2AG282900 Rh2BG294100 Rh3DG236700 |
| rosa_wichuraiana | Rw2G022590 Rw2G022610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 687 |
| Acc16I | TGCGCA | 2 cut(s) | 100, 406 |
| AccB1I | GGYRCC | 1 cut(s) | 1130 |
| AccI | GTMKAC | 2 cut(s) | 195, 1500 |
| AciI | CCGC | 5 cut(s) | 365, 541, 902, 1128, 1454 |
| AclWI | GGATC | 2 cut(s) | 882, 1586 |
| AcsI | RAATTY | 2 cut(s) | 1084, 1192 |
| AcuI | CTGAAG | 2 cut(s) | 441, 959 |
| AdeI | CACNNNGTG | 1 cut(s) | 611 |
| AfaI | GTAC | 3 cut(s) | 203, 1305, 1662 |
| AflIII | ACRYGT | 4 cut(s) | 198, 342, 780, 1671 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 46 |
| AhlI | ACTAGT | 1 cut(s) | 28 |
| AjiI | CACGTC | 1 cut(s) | 199 |
| AjnI | CCWGG | 4 cut(s) | 1187, 1486, 1640, 1699 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 706, 738 |
| Alw21I | GWGCWC | 4 cut(s) | 190, 436, 444, 607 |
| Alw26I | GTCTC | 4 cut(s) | 555, 668, 1189, 1498 |
| Alw44I | GTGCAC | 2 cut(s) | 440, 603 |
| AlwI | GGATC | 2 cut(s) | 882, 1586 |
| Ama87I | CYCGRG | 1 cut(s) | 1346 |
| AoxI | GGCC | 1 cut(s) | 963 |
| ApaLI | GTGCAC | 2 cut(s) | 440, 603 |
| ApeKI | GCWGC | 2 cut(s) | 1010, 1652 |
| ApoI | RAATTY | 2 cut(s) | 1084, 1192 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 239, 944, 1021 |
| AspLEI | GCGC | 4 cut(s) | 101, 131, 407, 850 |
| AspS9I | GGNCC | 1 cut(s) | 40 |
| AsuC2I | CCSGG | 1 cut(s) | 751 |
| AsuHPI | GGTGA | 2 cut(s) | 51, 70 |
| AsuII | TTCGAA | 1 cut(s) | 167 |
| AvaI | CYCGRG | 1 cut(s) | 1346 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BaeGI | GKGCMC | 3 cut(s) | 444, 607, 1586 |
| BanI | GGYRCC | 1 cut(s) | 1130 |
| BanII | GRGCYC | 2 cut(s) | 436, 1347 |
| BbsI | GAAGAC | 1 cut(s) | 48 |
| Bbv12I | GWGCWC | 4 cut(s) | 190, 436, 444, 607 |
| BbvCI | CCTCAGC | 1 cut(s) | 653 |
| BbvI | GCAGC | 2 cut(s) | 1022, 1664 |
| BccI | CCATC | 1 cut(s) | 1142 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 172, 206 |
| BciT130I | CCWGG | 4 cut(s) | 1189, 1488, 1642, 1701 |
| BciVI | GTATCC | 2 cut(s) | 1707, 1741 |
| BcnI | CCSGG | 1 cut(s) | 751 |
| BcoDI | GTCTC | 4 cut(s) | 555, 668, 1189, 1498 |
| BcuI | ACTAGT | 1 cut(s) | 28 |
| BfaI | CTAG | 2 cut(s) | 29, 711 |
| BfmI | CTRYAG | 1 cut(s) | 1315 |
| BfoI | RGCGCY | 1 cut(s) | 132 |
| BfuI | GTATCC | 2 cut(s) | 1707, 1741 |
| BisI | GCNGC | 3 cut(s) | 365, 1011, 1653 |
| BlsI | GCNGC | 3 cut(s) | 366, 1012, 1654 |
| Bme1390I | CCNGG | 5 cut(s) | 751, 1189, 1488, 1642, 1701 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 46 |
| BmeT110I | CYCGRG | 1 cut(s) | 1346 |
| BmgBI | CACGTC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 1 cut(s) | 40 |
| BmiI | GGNNCC | 2 cut(s) | 1132, 1639 |
| BmrFI | CCNGG | 5 cut(s) | 751, 1189, 1488, 1642, 1701 |
| BmrI | ACTGGG | 1 cut(s) | 606 |
| BmsI | GCATC | 3 cut(s) | 1115, 1132, 1639 |
| BmuI | ACTGGG | 1 cut(s) | 606 |
| BpiI | GAAGAC | 1 cut(s) | 48 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 310, 342 |
| Bpu10I | CCTNAGC | 2 cut(s) | 435, 653 |
| Bpu14I | TTCGAA | 1 cut(s) | 167 |
| BpuEI | CTTGAG | 1 cut(s) | 650 |
| BpuMI | CCSGG | 1 cut(s) | 751 |
| BsaI | GGTCTC | 2 cut(s) | 668, 1189 |
| BsaJI | CCNNGG | 3 cut(s) | 588, 1392, 1641 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 423, 453 |
| Bse118I | RCCGGY | 1 cut(s) | 965 |
| Bse1I | ACTGG | 1 cut(s) | 601 |
| Bse3DI | GCAATG | 2 cut(s) | 268, 636 |
| BseBI | CCWGG | 4 cut(s) | 1189, 1488, 1642, 1701 |
| BseDI | CCNNGG | 3 cut(s) | 588, 1392, 1641 |
| BseGI | GGATG | 2 cut(s) | 1134, 1651 |
| BseMI | GCAATG | 2 cut(s) | 268, 636 |
| BseMII | CTCAG | 4 cut(s) | 308, 449, 644, 1509 |
| BseNI | ACTGG | 1 cut(s) | 601 |
| BseSI | GKGCMC | 3 cut(s) | 444, 607, 1586 |
| BseXI | GCAGC | 2 cut(s) | 1022, 1664 |
| BshFI | GGCC | 1 cut(s) | 965 |
| BshNI | GGYRCC | 1 cut(s) | 1130 |
| BsiHKAI | GWGCWC | 4 cut(s) | 190, 436, 444, 607 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1346 |
| BsiSI | CCGG | 2 cut(s) | 751, 966 |
| BsmAI | GTCTC | 4 cut(s) | 555, 668, 1189, 1498 |
| BsmI | GAATGC | 2 cut(s) | 232, 895 |
| BsnI | GGCC | 1 cut(s) | 965 |
| Bso31I | GGTCTC | 2 cut(s) | 668, 1189 |
| BsoBI | CYCGRG | 1 cut(s) | 1346 |
| Bsp119I | TTCGAA | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 6 cut(s) | 190, 436, 444, 607, 1347, 1586 |
| Bsp143I | GATC | 3 cut(s) | 874, 1420, 1591 |
| Bsp19I | CCATGG | 1 cut(s) | 588 |
| BspACI | CCGC | 5 cut(s) | 365, 541, 902, 1128, 1454 |
| BspANI | GGCC | 1 cut(s) | 965 |
| BspCNI | CTCAG | 4 cut(s) | 309, 448, 645, 1508 |
| BspLI | GGNNCC | 2 cut(s) | 1132, 1639 |
| BspPI | GGATC | 2 cut(s) | 882, 1586 |
| BspQI | GCTCTTC | 2 cut(s) | 417, 1557 |
| BspT104I | TTCGAA | 1 cut(s) | 167 |
| BspT107I | GGYRCC | 1 cut(s) | 1130 |
| BspTNI | GGTCTC | 2 cut(s) | 668, 1189 |
| BsrDI | GCAATG | 2 cut(s) | 268, 636 |
| BsrFI | RCCGGY | 1 cut(s) | 965 |
| BsrI | ACTGG | 1 cut(s) | 601 |
| BssAI | RCCGGY | 1 cut(s) | 965 |
| BssECI | CCNNGG | 3 cut(s) | 588, 1392, 1641 |
| BssMI | GATC | 3 cut(s) | 874, 1420, 1591 |
| BssNAI | GTATAC | 1 cut(s) | 1501 |
| BssT1I | CCWWGG | 2 cut(s) | 588, 1392 |
| Bst1107I | GTATAC | 1 cut(s) | 1501 |
| Bst2UI | CCWGG | 4 cut(s) | 1189, 1488, 1642, 1701 |
| Bst4CI | ACNGT | 5 cut(s) | 411, 446, 1240, 1414, 1581 |
| Bst6I | CTCTTC | 2 cut(s) | 417, 1557 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 899 |
| BstBI | TTCGAA | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 5 cut(s) | 303, 737, 963, 1475, 1522 |
| BstDEI | CTNAG | 5 cut(s) | 317, 435, 653, 1495, 1514 |
| BstDSI | CCRYGG | 1 cut(s) | 588 |
| BstEII | GGTNACC | 1 cut(s) | 793 |
| BstF5I | GGATG | 2 cut(s) | 1134, 1651 |
| BstH2I | RGCGCY | 1 cut(s) | 132 |
| BstHHI | GCGC | 4 cut(s) | 101, 131, 407, 850 |
| BstKTI | GATC | 3 cut(s) | 877, 1423, 1594 |
| BstMAI | GTCTC | 4 cut(s) | 555, 668, 1189, 1498 |
| BstMBI | GATC | 3 cut(s) | 874, 1420, 1591 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 107, 137, 213, 899, 971, 1483 |
| BstNI | CCWGG | 4 cut(s) | 1189, 1488, 1642, 1701 |
| BstNSI | RCATGY | 4 cut(s) | 346, 1079, 1477, 1675 |
| BstPI | GGTNACC | 1 cut(s) | 793 |
| BstSCI | CCNGG | 5 cut(s) | 749, 1187, 1486, 1640, 1699 |
| BstSFI | CTRYAG | 1 cut(s) | 1315 |
| BstSLI | GKGCMC | 3 cut(s) | 444, 607, 1586 |
| BstV1I | GCAGC | 2 cut(s) | 1022, 1664 |
| BstV2I | GAAGAC | 1 cut(s) | 48 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1532 |
| BstZ17I | GTATAC | 1 cut(s) | 1501 |
| BsuI | GTATCC | 2 cut(s) | 1707, 1741 |
| BsuRI | GGCC | 1 cut(s) | 965 |
| BtgI | CCRYGG | 1 cut(s) | 588 |
| BtrI | CACGTC | 1 cut(s) | 199 |
| BtsCI | GGATG | 2 cut(s) | 1134, 1651 |
| BtsI | GCAGTG | 2 cut(s) | 190, 931 |
| BtsIMutI | CAGTG | 4 cut(s) | 190, 314, 873, 931 |
| Cac8I | GCNNGC | 5 cut(s) | 303, 737, 963, 1475, 1522 |
| CfoI | GCGC | 4 cut(s) | 101, 131, 407, 850 |
| Cfr10I | RCCGGY | 1 cut(s) | 965 |
| Cfr13I | GGNCC | 1 cut(s) | 40 |
| Csp6I | GTAC | 3 cut(s) | 202, 1304, 1661 |
| CviQI | GTAC | 3 cut(s) | 202, 1304, 1661 |
| DdeI | CTNAG | 5 cut(s) | 317, 435, 653, 1495, 1514 |
| DpnI | GATC | 3 cut(s) | 876, 1422, 1593 |
| DpnII | GATC | 3 cut(s) | 874, 1420, 1591 |
| DraIII | CACNNNGTG | 1 cut(s) | 611 |
| DriI | GACNNNNNGTC | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 2 cut(s) | 417, 1557 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 46 |
| EarI | CTCTTC | 2 cut(s) | 417, 1557 |
| Ecl136II | GAGCTC | 1 cut(s) | 434 |
| Eco130I | CCWWGG | 2 cut(s) | 588, 1392 |
| Eco24I | GRGCYC | 2 cut(s) | 436, 1347 |
| Eco31I | GGTCTC | 2 cut(s) | 668, 1189 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco53kI | GAGCTC | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 2 cut(s) | 441, 959 |
| Eco88I | CYCGRG | 1 cut(s) | 1346 |
| Eco91I | GGTNACC | 1 cut(s) | 793 |
| EcoICRI | GAGCTC | 1 cut(s) | 434 |
| EcoO65I | GGTNACC | 1 cut(s) | 793 |
| EcoRI | GAATTC | 1 cut(s) | 1192 |
| EcoRII | CCWGG | 4 cut(s) | 1187, 1486, 1640, 1699 |
| EcoT14I | CCWWGG | 2 cut(s) | 588, 1392 |
| EcoT38I | GRGCYC | 2 cut(s) | 436, 1347 |
| ErhI | CCWWGG | 2 cut(s) | 588, 1392 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1497, 1529 |
| FauI | CCCGC | 2 cut(s) | 534, 895 |
| FblI | GTMKAC | 2 cut(s) | 195, 1500 |
| Fnu4HI | GCNGC | 3 cut(s) | 365, 1011, 1653 |
| FokI | GGATG | 2 cut(s) | 1121, 1658 |
| FriOI | GRGCYC | 2 cut(s) | 436, 1347 |
| Fsp4HI | GCNGC | 3 cut(s) | 365, 1011, 1653 |
| FspBI | CTAG | 2 cut(s) | 29, 711 |
| FspI | TGCGCA | 2 cut(s) | 100, 406 |
| GlaI | GCGC | 4 cut(s) | 100, 130, 406, 849 |
| GluI | GCNGC | 3 cut(s) | 365, 1011, 1653 |
| HaeII | RGCGCY | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 965 |
| HapII | CCGG | 2 cut(s) | 751, 966 |
| HhaI | GCGC | 4 cut(s) | 101, 131, 407, 850 |
| Hin6I | GCGC | 4 cut(s) | 99, 129, 405, 848 |
| HinP1I | GCGC | 4 cut(s) | 99, 129, 405, 848 |
| HincII | GTYRAC | 2 cut(s) | 196, 1629 |
| HindII | GTYRAC | 2 cut(s) | 196, 1629 |
| HindIII | AAGCTT | 1 cut(s) | 1568 |
| HinfI | GANTC | 4 cut(s) | 218, 533, 773, 818 |
| HpaII | CCGG | 2 cut(s) | 751, 966 |
| HphI | GGTGA | 2 cut(s) | 51, 70 |
| Hpy166II | GTNNAC | 8 cut(s) | 196, 202, 442, 605, 1073, 1158, 1501, 1629 |
| Hpy188I | TCNGA | 6 cut(s) | 356, 530, 622, 817, 939, 952 |
| Hpy188III | TCNNGA | 3 cut(s) | 338, 1066, 1448 |
| Hpy8I | GTNNAC | 8 cut(s) | 196, 202, 442, 605, 1073, 1158, 1501, 1629 |
| Hpy99I | CGWCG | 5 cut(s) | 197, 200, 248, 373, 376 |
| HpyAV | CCTTC | 6 cut(s) | 229, 758, 1225, 1303, 1454, 1471 |
| HpyCH4III | ACNGT | 5 cut(s) | 411, 446, 1240, 1414, 1581 |
| HpyCH4IV | ACGT | 3 cut(s) | 198, 374, 780 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 107, 137, 213, 899, 971, 1483 |
| HpyF3I | CTNAG | 5 cut(s) | 317, 435, 653, 1495, 1514 |
| HpySE526I | ACGT | 3 cut(s) | 198, 374, 780 |
| HspAI | GCGC | 4 cut(s) | 99, 129, 405, 848 |
| Kzo9I | GATC | 3 cut(s) | 874, 1420, 1591 |
| LguI | GCTCTTC | 2 cut(s) | 417, 1557 |
| LmnI | GCTCC | 4 cut(s) | 431, 921, 1399, 1643 |
| Lsp1109I | GCAGC | 2 cut(s) | 1022, 1664 |
| LweI | GCATC | 3 cut(s) | 1115, 1132, 1639 |
| MaeI | CTAG | 2 cut(s) | 29, 711 |
| MaeII | ACGT | 3 cut(s) | 198, 374, 780 |
| MaeIII | GTNAC | 5 cut(s) | 268, 574, 592, 679, 793 |
| MalI | GATC | 3 cut(s) | 876, 1422, 1593 |
| MboI | GATC | 3 cut(s) | 874, 1420, 1591 |
| MboII | GAAGA | 7 cut(s) | 48, 434, 1054, 1134, 1275, 1544, 1748 |
| MhlI | GDGCHC | 6 cut(s) | 190, 436, 444, 607, 1347, 1586 |
| MluCI | AATT | 7 cut(s) | 673, 897, 1084, 1192, 1244, 1299, 1369 |
| MlyI | GAGTC | 3 cut(s) | 227, 542, 827 |
| MmeI | TCCRAC | 4 cut(s) | 334, 801, 1314, 1691 |
| MroXI | GAANNNNTTC | 3 cut(s) | 239, 944, 1021 |
| MseI | TTAA | 4 cut(s) | 347, 549, 1004, 1758 |
| MslI | CAYNNNNRTG | 2 cut(s) | 261, 1674 |
| MspI | CCGG | 2 cut(s) | 751, 966 |
| MspR9I | CCNGG | 5 cut(s) | 751, 1189, 1488, 1642, 1701 |
| Mva1269I | GAATGC | 2 cut(s) | 232, 895 |
| MvaI | CCWGG | 4 cut(s) | 1189, 1488, 1642, 1701 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 107, 137, 213, 899, 971, 1483 |
| NciI | CCSGG | 1 cut(s) | 751 |
| NcoI | CCATGG | 1 cut(s) | 588 |
| NdeII | GATC | 3 cut(s) | 874, 1420, 1591 |
| NlaIV | GGNNCC | 2 cut(s) | 1132, 1639 |
| NmuCI | GTSAC | 3 cut(s) | 268, 574, 679 |
| NsbI | TGCGCA | 2 cut(s) | 100, 406 |
| NspI | RCATGY | 4 cut(s) | 346, 1079, 1477, 1675 |
| NspV | TTCGAA | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 1477 |
| PaeR7I | CTCGAG | 1 cut(s) | 1346 |
| PciI | ACATGT | 2 cut(s) | 342, 1671 |
| PciSI | GCTCTTC | 2 cut(s) | 417, 1557 |
| PctI | GAATGC | 2 cut(s) | 232, 895 |
| PdmI | GAANNNNTTC | 3 cut(s) | 239, 944, 1021 |
| PfeI | GAWTC | 1 cut(s) | 773 |
| PfoI | TCCNGGA | 2 cut(s) | 749, 1187 |
| PkrI | GCNGC | 3 cut(s) | 366, 1012, 1654 |
| PleI | GAGTC | 3 cut(s) | 226, 541, 826 |
| PpsI | GAGTC | 3 cut(s) | 226, 541, 826 |
| PscI | ACATGT | 2 cut(s) | 342, 1671 |
| PsiI | TTATAA | 1 cut(s) | 687 |
| Psp124BI | GAGCTC | 1 cut(s) | 436 |
| Psp6I | CCWGG | 4 cut(s) | 1187, 1486, 1640, 1699 |
| PspEI | GGTNACC | 1 cut(s) | 793 |
| PspGI | CCWGG | 4 cut(s) | 1187, 1486, 1640, 1699 |
| PspN4I | GGNNCC | 2 cut(s) | 1132, 1639 |
| PspPI | GGNCC | 1 cut(s) | 40 |
| PspXI | VCTCGAGB | 1 cut(s) | 1346 |
| RsaI | GTAC | 3 cut(s) | 203, 1305, 1662 |
| RsaNI | GTAC | 3 cut(s) | 202, 1304, 1661 |
| RseI | CAYNNNNRTG | 2 cut(s) | 261, 1674 |
| SacI | GAGCTC | 1 cut(s) | 436 |
| SalI | GTCGAC | 1 cut(s) | 194 |
| SapI | GCTCTTC | 2 cut(s) | 417, 1557 |
| SaqAI | TTAA | 4 cut(s) | 347, 549, 1004, 1758 |
| SatI | GCNGC | 3 cut(s) | 365, 1011, 1653 |
| Sau3AI | GATC | 3 cut(s) | 874, 1420, 1591 |
| Sau96I | GGNCC | 1 cut(s) | 40 |
| SchI | GAGTC | 3 cut(s) | 227, 542, 827 |
| ScrFI | CCNGG | 5 cut(s) | 751, 1189, 1488, 1642, 1701 |
| SduI | GDGCHC | 6 cut(s) | 190, 436, 444, 607, 1347, 1586 |
| SfaNI | GCATC | 3 cut(s) | 1115, 1132, 1639 |
| SfcI | CTRYAG | 1 cut(s) | 1315 |
| Sfr274I | CTCGAG | 1 cut(s) | 1346 |
| SfuI | TTCGAA | 1 cut(s) | 167 |
| SgrDI | CGTCGACG | 1 cut(s) | 194 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SlaI | CTCGAG | 1 cut(s) | 1346 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 261, 1674 |
| SmlI | CTYRAG | 2 cut(s) | 665, 1346 |
| SmoI | CTYRAG | 2 cut(s) | 665, 1346 |
| SpeI | ACTAGT | 1 cut(s) | 28 |
| SphI | GCATGC | 1 cut(s) | 1477 |
| Sse9I | AATT | 7 cut(s) | 673, 897, 1084, 1192, 1244, 1299, 1369 |
| SsiI | CCGC | 5 cut(s) | 365, 541, 902, 1128, 1454 |
| SspI | AATATT | 1 cut(s) | 916 |
| SspMI | CTAG | 2 cut(s) | 29, 711 |
| SstI | GAGCTC | 1 cut(s) | 436 |
| StyD4I | CCNGG | 5 cut(s) | 749, 1187, 1486, 1640, 1699 |
| StyI | CCWWGG | 2 cut(s) | 588, 1392 |
| TaaI | ACNGT | 5 cut(s) | 411, 446, 1240, 1414, 1581 |
| TaiI | ACGT | 3 cut(s) | 201, 377, 783 |
| TaqI | TCGA | 5 cut(s) | 117, 167, 195, 243, 1347 |
| TasI | AATT | 7 cut(s) | 673, 897, 1084, 1192, 1244, 1299, 1369 |
| TatI | WGTACW | 1 cut(s) | 1303 |
| TauI | GCSGC | 1 cut(s) | 367 |
| TfiI | GAWTC | 1 cut(s) | 773 |
| Tru1I | TTAA | 4 cut(s) | 347, 549, 1004, 1758 |
| Tru9I | TTAA | 4 cut(s) | 347, 549, 1004, 1758 |
| TscAI | CASTG | 4 cut(s) | 190, 321, 873, 931 |
| TseFI | GTSAC | 3 cut(s) | 268, 574, 679 |
| TseI | GCWGC | 2 cut(s) | 1010, 1652 |
| Tsp45I | GTSAC | 3 cut(s) | 268, 574, 679 |
| TspDTI | ATGAA | 5 cut(s) | 693, 1181, 1185, 1520, 1749 |
| TspGWI | ACGGA | 2 cut(s) | 833, 1678 |
| TspRI | CASTG | 4 cut(s) | 190, 321, 873, 931 |
| VneI | GTGCAC | 2 cut(s) | 440, 603 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XapI | RAATTY | 2 cut(s) | 1084, 1192 |
| XceI | RCATGY | 4 cut(s) | 346, 1079, 1477, 1675 |
| XhoI | CTCGAG | 1 cut(s) | 1346 |
| XmiI | GTMKAC | 2 cut(s) | 195, 1500 |
| XmnI | GAANNNNTTC | 3 cut(s) | 239, 944, 1021 |
| XspI | CTAG | 2 cut(s) | 29, 711 |