RLG00000018742

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008107
Physical Location & Seq
Reverse (-)
34918507 .. 34921189
2683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018742

Sequence Viewer

Length: 1923 bp
ATGACCCAGAAGCTATCAAAACTAGTTGGTTTGGACCTCTTGTCTGGGTCTTCACCAACCCCTCAAAACCTTACCAAAATCATATCTTTCTGCGCAACATCGGCTTCTTTCGATGTGGGTAGCTCCATCCACGCCATTGTTATCAAGTTGGGTTTTTGTTCGAATGTCTATATATGCAGTGCTCTCGTCGACGTGTACGGCAAATGTGGCAAGTCGTGGAATGCCCAGAAGGTGTTCGACGAAACGCCTCACAGAAATGTAGTGACTTGGAACTCTTTGATATCTGGTTATTTGAAAGCTGGTTCGCCACTGAGAGCAACTCGTTTGTTTATGGACATGTTAAGGGTCGGAACAGAGCCGCCGACGACGTTCAGCTTTTCGGGGGTGTTGGTGTGTTGCGCACAGTTAGAAGCTCAACAGCTTGGAGCTCAGGTGCATGTTTTCAGCGTGAAAATGGGGCTTTGTGATGATGTTGTGGTGGGAACAGGATTGATAGATATGTATTCAAAGTGTTGTAAGGTTAGAGAGTCATGGCGGGTGTTTAATCAAATGCGAGACAAGAATGTTGTGACATGGACTTCCATGGTTACTGGGTGTGCACAGAATGGGCAGTCTGATGAGGCAATGACTTTGGTGAGAGAAATGCTGAGGTTGGGTCTCAAGCCGAATTATGTTACTTATAATAGTTTGTTGAGTTCATTTGCTAGCATGGACTTTTGGGATTGTTGCAGGCAAATCCATTGCCGGATAGTGAAAGACGGGTTTGATTCCAACATGTATATTGTGGTTACCCTTTTGACCTTATATTCAGAGTCTAATAGTAGCTTCGAGGACTTCCGTGCGCTTTGCTCGTGTGTTTCAGTGTGGGATCCAATCTCATGGAATGCAGTAATTGCAGGTTTTTGTAATATTGGGAGCAGTGAGGAAGCTCTGAAGTGTTTATCTGAAATGAGGCAGGCCGGTGTTGCTGTGGATTTTTTCACATTTACAAGCATTTTAAGAGCAGCAGGAACTCTTTCAGCACTTGTAGAGGGAAAGAAAATCCATGCTCTTATCTTCAAGAGTGGACATGCTTCAAATTTATGTGTTCAGAATGGGCTTGTTTCAATGTATGGAAGATGCGGTGCCATCCATGATGCAAAGTGGGTGTTTACTTTGATGAAAGAACATGATGTGGTCTCCTGGAATTCATTATTATCAGGTTATGCACATCATGGATTTGGGAAGGAGACTGTTGAATTGTTTGAGCAAATGAGAAGAACAGAGGTCAAACCAAATAATACCACCTTCCTGATTGTACTAACTTGCTGTAGCCATGTTGGTTTGTTGGACAAAGGGCTCGAGTATTTCAATCTAATGAGAAATGATGATTTGCCTGAACCACCCAAGGTGGAGCATTACGCTACCGTTGTTGATCTTTTTGGTCGGGCTGGAAACCTTCACGAAGCGGAAGCCTTCGTTAATAGCATGCCAATAGAGCCAGGTGCCTCAGTATACAAAGCTCTACTTAGTGCGTGCCAAGTTCATGGAAACAGAGAACTTGCTCTTCCTTCTGCAACAAAGCTTCAGCAACTGTGCCCAAATGATCCTGCAACTTACATACTGCTATCGAATGTGTTGTTGACAAGAGGCTCCTGGGATGATGCAGCAGGAGTACGGAAGCTCATTGTAGTTCTTTTCCCCATTGCTGTTACTTTTTTCATTACATGGTGGTTCATCCAGTTTGTTGATGGGTTCTTCAGTCCACTCTATGAGCAGCTTGGCATTGAGATCTTTGCTTTTGGTGATGCCACTCTTCAAGGGACCGTAAAGTGGGGTAGTTTTATTGAGAACATCAATTTTGATTTTGAGGTAGGAAGTTTAAGTCCAGATTTGCTTAACAGTGAAGCAAATGCAGTTAATGATGGAGCTTCAGTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

641

Amino Acids

70.53

Weight (kDa)

5.81

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 85 - 134 1.4e-08 PPR repeat family
PPR PF01535 88 - 117 2.2e-06 PPR repeat
PPR_long PF17177 172 - 257 2.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 187 - 235 4.3e-13 PPR repeat family
PPR_3 PF13812 188 - 234 2.2e-08 Pentatricopeptide repeat domain
PPR PF01535 190 - 220 4.9e-08 PPR repeat
PPR_2 PF13041 292 - 335 4.6e-10 PPR repeat family
PPR PF01535 292 - 322 2.1e-06 PPR repeat
PPR_2 PF13041 391 - 438 1.3e-11 PPR repeat family
PPR PF01535 393 - 420 2.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
Acc16I TGCGCA 2 cut(s) 94, 400
Acc36I ACCTGC 1 cut(s) 887
AccB1I GGYRCC 2 cut(s) 1124, 1484
AccI GTMKAC 2 cut(s) 189, 1494
AciI CCGC 4 cut(s) 359, 535, 1122, 1448
AclWI GGATC 3 cut(s) 863, 876, 1580
AcsI RAATTY 2 cut(s) 1078, 1186
AcuI CTGAAG 4 cut(s) 953, 1550, 1723, 1896
AfaI GTAC 3 cut(s) 197, 1299, 1656
AfiI CCNNNNNNNGG 1 cut(s) 1812
AflIII ACRYGT 3 cut(s) 192, 336, 774
AgsI TTSAA 8 cut(s) 295, 507, 1060, 1077, 1107, 1238, 1351, 1799
AhdI GACNNNNNGTC 1 cut(s) 40
AhlI ACTAGT 1 cut(s) 22
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 3 cut(s) 1181, 1480, 1634
Alw21I GWGCWC 3 cut(s) 184, 430, 601
Alw26I GTCTC 4 cut(s) 549, 662, 1183, 1223
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 3 cut(s) 863, 876, 1580
AlwNI CAGNNNCTG 1 cut(s) 1573
Ama87I CYCGRG 1 cut(s) 1340
AoxI GGCC 1 cut(s) 957
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 1004, 1646, 1756
ApoI RAATTY 2 cut(s) 1078, 1186
Asp700I GAANNNNTTC 2 cut(s) 233, 1015
AspLEI GCGC 3 cut(s) 95, 401, 844
AspS9I GGNCC 2 cut(s) 34, 1803
AsuHPI GGTGA 3 cut(s) 45, 646, 1796
AsuII TTCGAA 1 cut(s) 161
AsuNHI GCTAGC 1 cut(s) 704
AvaI CYCGRG 1 cut(s) 1340
AvaII GGWCC 2 cut(s) 34, 1803
BaeGI GKGCMC 2 cut(s) 601, 1580
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 2 cut(s) 1124, 1484
BanII GRGCYC 2 cut(s) 430, 1341
BauI CACGAG 1 cut(s) 850
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 3 cut(s) 184, 430, 601
BbvCI CCTCAGC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 1016, 1658, 1768
BccI CCATC 4 cut(s) 134, 1136, 1724, 1898
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 3 cut(s) 1183, 1482, 1636
BcoDI GTCTC 4 cut(s) 549, 662, 1183, 1223
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 2 cut(s) 23, 705
BfmI CTRYAG 1 cut(s) 1309
BfuAI ACCTGC 1 cut(s) 887
BglII AGATCT 1 cut(s) 1770
BisI GCNGC 4 cut(s) 359, 1005, 1647, 1757
BlsI GCNGC 4 cut(s) 360, 1006, 1648, 1758
Bme1390I CCNGG 3 cut(s) 1183, 1482, 1636
Bme18I GGWCC 2 cut(s) 34, 1803
BmeRI GACNNNNNGTC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 1340
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 34, 1803
BmiI GGNNCC 5 cut(s) 870, 1126, 1486, 1633, 1804
BmrFI CCNGG 3 cut(s) 1183, 1482, 1636
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 4 cut(s) 1109, 1126, 1633, 1777
BmtI GCTAGC 1 cut(s) 708
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 304, 336
Bpu10I CCTNAGC 2 cut(s) 429, 647
Bpu14I TTCGAA 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 644
BsaI GGTCTC 2 cut(s) 662, 1183
BsaJI CCNNGG 3 cut(s) 582, 1386, 1635
BsaXI ACNNNNNCTCC 3 cut(s) 417, 447, 1899
Bsc4I CCNNNNNNNGG 1 cut(s) 1812
Bse118I RCCGGY 1 cut(s) 959
Bse1I ACTGG 2 cut(s) 595, 1720
Bse3DI GCAATG 3 cut(s) 630, 739, 1683
BseBI CCWGG 3 cut(s) 1183, 1482, 1636
BseDI CCNNGG 3 cut(s) 582, 1386, 1635
BseGI GGATG 4 cut(s) 126, 1128, 1645, 1716
BseLI CCNNNNNNNGG 1 cut(s) 1812
BseMI GCAATG 3 cut(s) 630, 739, 1683
BseMII CTCAG 4 cut(s) 302, 443, 638, 1503
BseNI ACTGG 2 cut(s) 595, 1720
BseSI GKGCMC 2 cut(s) 601, 1580
BseXI GCAGC 3 cut(s) 1016, 1658, 1768
BshFI GGCC 1 cut(s) 959
BshNI GGYRCC 2 cut(s) 1124, 1484
BsiHKAI GWGCWC 3 cut(s) 184, 430, 601
BsiHKCI CYCGRG 1 cut(s) 1340
BsiSI CCGG 2 cut(s) 745, 960
BslFI GGGAC 1 cut(s) 1816
BslI CCNNNNNNNGG 1 cut(s) 1812
BsmAI GTCTC 4 cut(s) 549, 662, 1183, 1223
BsmFI GGGAC 1 cut(s) 1816
BsmI GAATGC 2 cut(s) 226, 889
BsnI GGCC 1 cut(s) 959
Bso31I GGTCTC 2 cut(s) 662, 1183
BsoBI CYCGRG 1 cut(s) 1340
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 5 cut(s) 184, 430, 601, 1341, 1580
Bsp143I GATC 4 cut(s) 868, 1414, 1585, 1770
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 4 cut(s) 359, 535, 1122, 1448
BspANI GGCC 1 cut(s) 959
BspCNI CTCAG 4 cut(s) 303, 442, 639, 1502
BspLI GGNNCC 5 cut(s) 870, 1126, 1486, 1633, 1804
BspMI ACCTGC 1 cut(s) 887
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 3 cut(s) 863, 876, 1580
BspQI GCTCTTC 1 cut(s) 1551
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 2 cut(s) 1124, 1484
BspTNI GGTCTC 2 cut(s) 662, 1183
BsrDI GCAATG 3 cut(s) 630, 739, 1683
BsrFI RCCGGY 1 cut(s) 959
BsrI ACTGG 2 cut(s) 595, 1720
BssAI RCCGGY 1 cut(s) 959
BssECI CCNNGG 3 cut(s) 582, 1386, 1635
BssMI GATC 4 cut(s) 868, 1414, 1585, 1770
BssNAI GTATAC 1 cut(s) 1495
BssSI CACGAG 1 cut(s) 850
BssT1I CCWWGG 2 cut(s) 582, 1386
Bst1107I GTATAC 1 cut(s) 1495
Bst2BI CACGAG 1 cut(s) 850
Bst2UI CCWGG 3 cut(s) 1183, 1482, 1636
Bst4CI ACNGT 6 cut(s) 405, 1234, 1408, 1575, 1807, 1883
Bst6I CTCTTC 2 cut(s) 1551, 1800
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 5 cut(s) 706, 731, 957, 1469, 1516
BstDEI CTNAG 5 cut(s) 311, 429, 647, 1489, 1508
BstDSI CCRYGG 1 cut(s) 582
BstEII GGTNACC 1 cut(s) 787
BstF5I GGATG 4 cut(s) 126, 1128, 1645, 1716
BstHHI GCGC 3 cut(s) 95, 401, 844
BstKTI GATC 4 cut(s) 871, 1417, 1588, 1773
BstMAI GTCTC 4 cut(s) 549, 662, 1183, 1223
BstMBI GATC 4 cut(s) 868, 1414, 1585, 1770
BstMWI GCNNNNNNNGC 5 cut(s) 101, 207, 893, 965, 1477
BstNI CCWGG 3 cut(s) 1183, 1482, 1636
BstNSI RCATGY 5 cut(s) 340, 440, 778, 1073, 1471
BstPI GGTNACC 1 cut(s) 787
BstSCI CCNGG 3 cut(s) 1181, 1480, 1634
BstSFI CTRYAG 1 cut(s) 1309
BstSLI GKGCMC 2 cut(s) 601, 1580
BstV1I GCAGC 3 cut(s) 1016, 1658, 1768
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 868, 1770
BstXI CCANNNNNNTGG 2 cut(s) 879, 1526
BstYI RGATCY 2 cut(s) 868, 1770
BstZ17I GTATAC 1 cut(s) 1495
BsuRI GGCC 1 cut(s) 959
BtgI CCRYGG 1 cut(s) 582
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 4 cut(s) 126, 1128, 1645, 1716
BtsI GCAGTG 2 cut(s) 184, 925
BtsIMutI CAGTG 5 cut(s) 184, 308, 867, 925, 1888
BveI ACCTGC 1 cut(s) 887
Cac8I GCNNGC 5 cut(s) 706, 731, 957, 1469, 1516
CaiI CAGNNNCTG 1 cut(s) 1573
CfoI GCGC 3 cut(s) 95, 401, 844
Cfr10I RCCGGY 1 cut(s) 959
Cfr13I GGNCC 2 cut(s) 34, 1803
Csp6I GTAC 3 cut(s) 196, 1298, 1655
CviQI GTAC 3 cut(s) 196, 1298, 1655
DdeI CTNAG 5 cut(s) 311, 429, 647, 1489, 1508
DpnI GATC 4 cut(s) 870, 1416, 1587, 1772
DpnII GATC 4 cut(s) 868, 1414, 1585, 1770
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 1551, 1800
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 2 cut(s) 1551, 1800
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 2 cut(s) 582, 1386
Eco24I GRGCYC 2 cut(s) 430, 1341
Eco31I GGTCTC 2 cut(s) 662, 1183
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 34, 1803
Eco53kI GAGCTC 1 cut(s) 428
Eco57I CTGAAG 4 cut(s) 953, 1550, 1723, 1896
Eco88I CYCGRG 1 cut(s) 1340
Eco91I GGTNACC 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 428
EcoO65I GGTNACC 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 1186
EcoRII CCWGG 3 cut(s) 1181, 1480, 1634
EcoRV GATATC 1 cut(s) 282
EcoT14I CCWWGG 2 cut(s) 582, 1386
EcoT38I GRGCYC 2 cut(s) 430, 1341
ErhI CCWWGG 2 cut(s) 582, 1386
FalI AAGNNNNNCTT 2 cut(s) 1491, 1523
FaqI GGGAC 1 cut(s) 1816
FauI CCCGC 1 cut(s) 528
FblI GTMKAC 2 cut(s) 189, 1494
Fnu4HI GCNGC 4 cut(s) 359, 1005, 1647, 1757
FokI GGATG 4 cut(s) 113, 1115, 1652, 1703
FriOI GRGCYC 2 cut(s) 430, 1341
Fsp4HI GCNGC 4 cut(s) 359, 1005, 1647, 1757
FspBI CTAG 2 cut(s) 23, 705
FspI TGCGCA 2 cut(s) 94, 400
GlaI GCGC 3 cut(s) 94, 400, 843
GluI GCNGC 4 cut(s) 359, 1005, 1647, 1757
HaeIII GGCC 1 cut(s) 959
HapII CCGG 2 cut(s) 745, 960
HhaI GCGC 3 cut(s) 95, 401, 844
Hin6I GCGC 3 cut(s) 93, 399, 842
HinP1I GCGC 3 cut(s) 93, 399, 842
HincII GTYRAC 2 cut(s) 190, 1623
HindII GTYRAC 2 cut(s) 190, 1623
HindIII AAGCTT 1 cut(s) 1562
HinfI GANTC 3 cut(s) 527, 767, 812
HpaII CCGG 2 cut(s) 745, 960
HphI GGTGA 3 cut(s) 45, 646, 1796
Hpy166II GTNNAC 8 cut(s) 190, 196, 599, 1067, 1152, 1495, 1623, 1745
Hpy188I TCNGA 6 cut(s) 350, 616, 811, 933, 946, 1092
Hpy188III TCNNGA 4 cut(s) 1060, 1291, 1442, 1868
Hpy8I GTNNAC 8 cut(s) 190, 196, 599, 1067, 1152, 1495, 1623, 1745
Hpy99I CGWCG 5 cut(s) 191, 194, 242, 367, 370
HpyAV CCTTC 6 cut(s) 223, 1219, 1297, 1448, 1465, 1560
HpyCH4III ACNGT 6 cut(s) 405, 1234, 1408, 1575, 1807, 1883
HpyCH4IV ACGT 2 cut(s) 192, 368
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 207, 893, 965, 1477
HpyF3I CTNAG 5 cut(s) 311, 429, 647, 1489, 1508
HpySE526I ACGT 2 cut(s) 192, 368
HspAI GCGC 3 cut(s) 93, 399, 842
Kzo9I GATC 4 cut(s) 868, 1414, 1585, 1770
LguI GCTCTTC 1 cut(s) 1551
LmnI GCTCC 6 cut(s) 128, 425, 915, 1393, 1637, 1907
Lsp1109I GCAGC 3 cut(s) 1016, 1658, 1768
LweI GCATC 4 cut(s) 1109, 1126, 1633, 1777
MaeI CTAG 2 cut(s) 23, 705
MaeII ACGT 2 cut(s) 192, 368
MaeIII GTNAC 6 cut(s) 262, 568, 586, 673, 787, 1690
MalI GATC 4 cut(s) 870, 1416, 1587, 1772
MboI GATC 4 cut(s) 868, 1414, 1585, 1770
MboII GAAGA 7 cut(s) 42, 1048, 1128, 1269, 1538, 1729, 1787
MflI RGATCY 2 cut(s) 868, 1770
MhlI GDGCHC 5 cut(s) 184, 430, 601, 1341, 1580
MluCI AATT 6 cut(s) 667, 891, 1078, 1186, 1238, 1837
MlyI GAGTC 2 cut(s) 536, 821
MmeI TCCRAC 3 cut(s) 328, 795, 1308
MroXI GAANNNNTTC 2 cut(s) 233, 1015
MseI TTAA 7 cut(s) 341, 543, 998, 1461, 1862, 1878, 1899
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 2 cut(s) 745, 960
MspR9I CCNGG 3 cut(s) 1183, 1482, 1636
Mva1269I GAATGC 2 cut(s) 226, 889
MvaI CCWGG 3 cut(s) 1183, 1482, 1636
MwoI GCNNNNNNNGC 5 cut(s) 101, 207, 893, 965, 1477
NcoI CCATGG 1 cut(s) 582
NdeII GATC 4 cut(s) 868, 1414, 1585, 1770
NheI GCTAGC 1 cut(s) 704
NlaIV GGNNCC 5 cut(s) 870, 1126, 1486, 1633, 1804
NmuCI GTSAC 2 cut(s) 262, 568
NsbI TGCGCA 2 cut(s) 94, 400
NspI RCATGY 5 cut(s) 340, 440, 778, 1073, 1471
NspV TTCGAA 1 cut(s) 161
PaeI GCATGC 1 cut(s) 1471
PaeR7I CTCGAG 1 cut(s) 1340
PciI ACATGT 2 cut(s) 336, 774
PciSI GCTCTTC 1 cut(s) 1551
PctI GAATGC 2 cut(s) 226, 889
PdmI GAANNNNTTC 2 cut(s) 233, 1015
PfeI GAWTC 1 cut(s) 767
PfoI TCCNGGA 1 cut(s) 1181
PkrI GCNGC 4 cut(s) 360, 1006, 1648, 1758
PleI GAGTC 2 cut(s) 535, 820
PpsI GAGTC 2 cut(s) 535, 820
PscI ACATGT 2 cut(s) 336, 774
PsiI TTATAA 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 1181, 1480, 1634
PspEI GGTNACC 1 cut(s) 787
PspGI CCWGG 3 cut(s) 1181, 1480, 1634
PspN4I GGNNCC 5 cut(s) 870, 1126, 1486, 1633, 1804
PspPI GGNCC 2 cut(s) 34, 1803
PspXI VCTCGAGB 1 cut(s) 1340
PstNI CAGNNNCTG 1 cut(s) 1573
PsuI RGATCY 2 cut(s) 868, 1770
RsaI GTAC 3 cut(s) 197, 1299, 1656
RsaNI GTAC 3 cut(s) 196, 1298, 1655
RseI CAYNNNNRTG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 430
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 1551
SaqAI TTAA 7 cut(s) 341, 543, 998, 1461, 1862, 1878, 1899
SatI GCNGC 4 cut(s) 359, 1005, 1647, 1757
Sau3AI GATC 4 cut(s) 868, 1414, 1585, 1770
Sau96I GGNCC 2 cut(s) 34, 1803
SchI GAGTC 2 cut(s) 536, 821
ScrFI CCNGG 3 cut(s) 1183, 1482, 1636
SduI GDGCHC 5 cut(s) 184, 430, 601, 1341, 1580
SfaNI GCATC 4 cut(s) 1109, 1126, 1633, 1777
SfcI CTRYAG 1 cut(s) 1309
Sfr274I CTCGAG 1 cut(s) 1340
SfuI TTCGAA 1 cut(s) 161
SgrDI CGTCGACG 1 cut(s) 188
SinI GGWCC 2 cut(s) 34, 1803
SlaI CTCGAG 1 cut(s) 1340
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 659, 1340
SmoI CTYRAG 2 cut(s) 659, 1340
SpeI ACTAGT 1 cut(s) 22
SphI GCATGC 1 cut(s) 1471
Sse9I AATT 6 cut(s) 667, 891, 1078, 1186, 1238, 1837
SsiI CCGC 4 cut(s) 359, 535, 1122, 1448
SspI AATATT 1 cut(s) 910
SspMI CTAG 2 cut(s) 23, 705
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 1181, 1480, 1634
StyI CCWWGG 2 cut(s) 582, 1386
TaaI ACNGT 6 cut(s) 405, 1234, 1408, 1575, 1807, 1883
TaiI ACGT 2 cut(s) 195, 371
TaqI TCGA 7 cut(s) 111, 161, 189, 237, 828, 1341, 1610
TasI AATT 6 cut(s) 667, 891, 1078, 1186, 1238, 1837
TatI WGTACW 1 cut(s) 1297
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 7 cut(s) 341, 543, 998, 1461, 1862, 1878, 1899
Tru9I TTAA 7 cut(s) 341, 543, 998, 1461, 1862, 1878, 1899
TscAI CASTG 5 cut(s) 184, 315, 867, 925, 1888
TseFI GTSAC 2 cut(s) 262, 568
TseI GCWGC 3 cut(s) 1004, 1646, 1756
Tsp45I GTSAC 2 cut(s) 262, 568
TspDTI ATGAA 6 cut(s) 687, 1175, 1179, 1514, 1690, 1705
TspGWI ACGGA 2 cut(s) 827, 1672
TspRI CASTG 5 cut(s) 184, 315, 867, 925, 1888
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 2 cut(s) 34, 1803
XapI RAATTY 2 cut(s) 1078, 1186
XceI RCATGY 5 cut(s) 340, 440, 778, 1073, 1471
XcmI CCANNNNNNNNNTGG 1 cut(s) 1727
XhoI CTCGAG 1 cut(s) 1340
XmiI GTMKAC 2 cut(s) 189, 1494
XmnI GAANNNNTTC 2 cut(s) 233, 1015
XspI CTAG 2 cut(s) 23, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.