Rh2AG282900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008107
Physical Location & Seq
Reverse (-)
34397284 .. 34401345
4062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG282900.1

Sequence Viewer

Length: 1170 bp
ATGTTAAGGGTCGGAACAGAGCCGCCGACGACGTTCAGCTTTTCGGGGGTGTTGGTGTGTTGCGCACAGTTAGAAGCTCAAGAGCTTGGAGCTCAGGTGCACGGTTTGAGCTTGAAAATGGGGATTTGTGATGATGTTGTGGTGGGAACAGGATTGATTGATATGTATTCCAAGTGTTGTAAGGTTAGAGAGTCATGGCGGGTGTTTAATCAAATGCGAGACAAGAATGTTGTGACATGGACTTCCATGGTTACTGGGTGTGCACAGAGTGGGCAGTCTGATGAGGCAATGACTTTGGTGAGAGAAATGCTGAGGTTGGGTCTCAGGCCGAATTATGTTACTTATAATAGCTTGTTGAGTTCATTTGCTAGCATGGACTTTTGGGATTGTTGCAGGCAAATCCATTGCCGGATAGTGAAAGAAGGGTTTGATTCCAACGTGTATATTGTGGTTACTCTTTTGACCTTATATTCAGAGTCTAACAGTAGCTTGGAGGACTTCCGTGCGCTTTGCTCATGTGTTTCAGTGTGGGATCAAATCTCATGGAATGCAGTAATTGCAGGTTTTTGTAATATTGGGAGCAGTGAGGAAGCTCTGAAGTGTTTCTCTGAAATGAGGCAGGCCGGTGTTGCTGTGGATTTTTTCACATTTACAAGCATTTTAAGAGCAGCAGGAACTCTTTCAGCACTTTTTGTTGATGGGCTCTTCAGTCCACTCTATGAGCAGCTTGGCATTGAGATCTTTGGACTTGGATTTATCACATCCTTACTTTTCGTATTCTTTGTTGGCGTCTTTGTTTCCTCATGGATGGGTGCCACTGTTTTCTCTCTTGGAGAATGGATTATAAAGAAAATGCCTTCTGTTAAGCATATCTACTCAGCCTCCAAACAAATTAGTTCCGCAATTTCTCCACGCCAAAATACCACAGCTTTTAAAGAGGTAGCAATTATCCGTCACCCACGTGTTGGCGAATATGCTTTTGGGTTTATTACATCAACTGTTACCCTTCAGAAGGTCATTGAAGATGCATTCTCATCATCAGCATCTGTAGAATATTGTTGGGTATATGGGACCAATGATCGGCCCTGGGAATCTCCCAGCTGGCGAACTTCAAAATCCTTTCCTTGCTTATATATTTCTGGTAGAAGTTGGTGGATACGTGGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

389

Amino Acids

43.39

Weight (kDa)

6.14

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 62 - 145 4.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 75 - 123 1.4e-12 PPR repeat family
PPR_3 PF13812 76 - 122 4.9e-08 Pentatricopeptide repeat domain
PPR PF01535 78 - 108 7.1e-08 PPR repeat
PPR_2 PF13041 178 - 223 2e-11 PPR repeat family
PPR PF01535 180 - 210 2.1e-07 PPR repeat
DUF502 PF04367 254 - 337 1.6e-21 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 345, 845
Acc16I TGCGCA 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 812
AccB7I CCANNNNNTGG 1 cut(s) 965
AciI CCGC 3 cut(s) 23, 199, 900
AclWI GGATC 1 cut(s) 540
AcuI CTGAAG 3 cut(s) 617, 691, 992
AcvI CACGTG 1 cut(s) 962
AcyI GRCGYC 1 cut(s) 789
AdeI CACNNNGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 965, 1012, 1080
AflIII ACRYGT 2 cut(s) 438, 961
AgsI TTSAA 3 cut(s) 115, 1022, 1113
AjnI CCWGG 1 cut(s) 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 963, 995
AleI CACNNNNGTG 1 cut(s) 960
Alw21I GWGCWC 3 cut(s) 94, 102, 265
Alw26I GTCTC 2 cut(s) 213, 326
Alw44I GTGCAC 2 cut(s) 98, 261
AlwI GGATC 1 cut(s) 540
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 3 cut(s) 326, 621, 1082
ApaLI GTGCAC 2 cut(s) 98, 261
ApeKI GCWGC 2 cut(s) 668, 724
Asp700I GAANNNNTTC 2 cut(s) 602, 679
AspLEI GCGC 2 cut(s) 65, 508
AspS9I GGNCC 3 cut(s) 1071, 1083, 1163
AsuHPI GGTGA 2 cut(s) 310, 947
AsuNHI GCTAGC 1 cut(s) 368
AvaII GGWCC 2 cut(s) 1071, 1163
BaeGI GKGCMC 2 cut(s) 102, 265
BanI GGYRCC 1 cut(s) 812
BanII GRGCYC 2 cut(s) 94, 705
BbrPI CACGTG 1 cut(s) 962
Bbv12I GWGCWC 3 cut(s) 94, 102, 265
BbvCI CCTCAGC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 680, 736
BccI CCATC 2 cut(s) 692, 802
BciT130I CCWGG 1 cut(s) 1087
BciVI GTATCC 1 cut(s) 1149
BcoDI GTCTC 2 cut(s) 213, 326
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 551
BfuI GTATCC 1 cut(s) 1149
BglII AGATCT 1 cut(s) 738
BisI GCNGC 3 cut(s) 23, 669, 725
BlsI GCNGC 3 cut(s) 24, 670, 726
Bme1390I CCNGG 1 cut(s) 1087
Bme18I GGWCC 2 cut(s) 1071, 1163
BmgT120I GGNCC 3 cut(s) 1071, 1083, 1163
BmiI GGNNCC 2 cut(s) 814, 1072
BmrFI CCNGG 1 cut(s) 1087
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 1015, 1052
BmtI GCTAGC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 93, 311
BpuEI CTTGAG 1 cut(s) 63
BsaAI YACGTR 2 cut(s) 962, 1160
BsaHI GRCGYC 1 cut(s) 789
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 246, 1085, 1086
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 866, 896
Bsc4I CCNNNNNNNGG 3 cut(s) 965, 1012, 1080
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 2 cut(s) 294, 403
BseBI CCWGG 1 cut(s) 1087
BseDI CCNNGG 3 cut(s) 246, 1085, 1086
BseGI GGATG 2 cut(s) 761, 813
BseLI CCNNNNNNNGG 3 cut(s) 965, 1012, 1080
BseMI GCAATG 2 cut(s) 294, 403
BseMII CTCAG 4 cut(s) 107, 302, 337, 891
BseNI ACTGG 1 cut(s) 259
BseSI GKGCMC 2 cut(s) 102, 265
BseXI GCAGC 2 cut(s) 680, 736
BseYI CCCAGC 1 cut(s) 1097
BshFI GGCC 3 cut(s) 328, 623, 1084
BshNI GGYRCC 1 cut(s) 812
BsiHKAI GWGCWC 3 cut(s) 94, 102, 265
BsiSI CCGG 2 cut(s) 409, 624
BslFI GGGAC 1 cut(s) 1084
BslI CCNNNNNNNGG 3 cut(s) 965, 1012, 1080
BsmAI GTCTC 2 cut(s) 213, 326
BsmFI GGGAC 1 cut(s) 1084
BsmI GAATGC 2 cut(s) 553, 1028
BsnI GGCC 3 cut(s) 328, 623, 1084
Bso31I GGTCTC 1 cut(s) 326
Bsp1286I GDGCHC 4 cut(s) 94, 102, 265, 705
Bsp143I GATC 3 cut(s) 532, 738, 1078
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 3 cut(s) 23, 199, 900
BspANI GGCC 3 cut(s) 328, 623, 1084
BspCNI CTCAG 4 cut(s) 106, 303, 336, 890
BspLI GGNNCC 2 cut(s) 814, 1072
BspMI ACCTGC 1 cut(s) 551
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 540
BspQI GCTCTTC 1 cut(s) 710
BspT107I GGYRCC 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 294, 403
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 3 cut(s) 246, 1085, 1086
BssMI GATC 3 cut(s) 532, 738, 1078
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 1087
Bst4CI ACNGT 5 cut(s) 69, 104, 485, 820, 1000
Bst6I CTCTTC 1 cut(s) 710
BstACI GRCGYC 1 cut(s) 789
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 962, 1160
BstC8I GCNNGC 4 cut(s) 370, 395, 621, 1103
BstDEI CTNAG 4 cut(s) 93, 311, 323, 877
BstDSI CCRYGG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 1010
BstF5I GGATG 2 cut(s) 761, 813
BstHHI GCGC 2 cut(s) 65, 508
BstKTI GATC 3 cut(s) 535, 741, 1081
BstMAI GTCTC 2 cut(s) 213, 326
BstMBI GATC 3 cut(s) 532, 738, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 557, 629
BstNI CCWGG 1 cut(s) 1087
BstSCI CCNGG 1 cut(s) 1085
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 2 cut(s) 102, 265
BstV1I GCAGC 2 cut(s) 680, 736
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BsuI GTATCC 1 cut(s) 1149
BsuRI GGCC 3 cut(s) 328, 623, 1084
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 761, 813
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 3 cut(s) 531, 589, 816
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 4 cut(s) 370, 395, 621, 1103
CaiI CAGNNNCTG 1 cut(s) 1046
CfoI GCGC 2 cut(s) 65, 508
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 3 cut(s) 1071, 1083, 1163
CseI GACGC 1 cut(s) 778
CviAII CATG 7 cut(s) 195, 237, 247, 373, 516, 543, 804
DdeI CTNAG 4 cut(s) 93, 311, 323, 877
DpnI GATC 3 cut(s) 534, 740, 1080
DpnII GATC 3 cut(s) 532, 738, 1078
DraI TTTAAA 1 cut(s) 934
DraIII CACNNNGTG 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 94, 705
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 1071, 1163
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 3 cut(s) 617, 691, 992
Eco72I CACGTG 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 1010
EcoRII CCWGG 1 cut(s) 1085
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 2 cut(s) 94, 705
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 7 cut(s) 198, 240, 250, 376, 519, 546, 807
FaqI GGGAC 1 cut(s) 1084
FatI CATG 7 cut(s) 194, 236, 246, 372, 515, 542, 803
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 23, 669, 725
FokI GGATG 2 cut(s) 748, 820
FriOI GRGCYC 2 cut(s) 94, 705
Fsp4HI GCNGC 3 cut(s) 23, 669, 725
FspBI CTAG 1 cut(s) 369
FspI TGCGCA 1 cut(s) 64
GlaI GCGC 2 cut(s) 64, 507
GluI GCNGC 3 cut(s) 23, 669, 725
GsaI CCCAGC 1 cut(s) 1101
HaeIII GGCC 3 cut(s) 328, 623, 1084
HapII CCGG 2 cut(s) 409, 624
HgaI GACGC 1 cut(s) 778
HhaI GCGC 2 cut(s) 65, 508
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 7 cut(s) 198, 240, 250, 376, 519, 546, 807
Hin6I GCGC 2 cut(s) 63, 506
HinP1I GCGC 2 cut(s) 63, 506
HinfI GANTC 4 cut(s) 191, 431, 476, 1091
HpaII CCGG 2 cut(s) 409, 624
HphI GGTGA 2 cut(s) 310, 947
Hpy166II GTNNAC 4 cut(s) 100, 263, 713, 1163
Hpy188I TCNGA 6 cut(s) 14, 280, 475, 597, 610, 1011
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 4 cut(s) 100, 263, 713, 1163
Hpy99I CGWCG 2 cut(s) 31, 34
HpyAV CCTTC 4 cut(s) 416, 867, 1006, 1016
HpyCH4III ACNGT 5 cut(s) 69, 104, 485, 820, 1000
HpyCH4IV ACGT 4 cut(s) 32, 438, 961, 1159
HpyCH4V TGCA 6 cut(s) 100, 263, 393, 551, 560, 1028
HpyF10VI GCNNNNNNNGC 2 cut(s) 557, 629
HpyF3I CTNAG 4 cut(s) 93, 311, 323, 877
HpySE526I ACGT 4 cut(s) 32, 438, 961, 1159
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 7 cut(s) 198, 240, 250, 376, 519, 546, 807
HspAI GCGC 2 cut(s) 63, 506
Kzo9I GATC 3 cut(s) 532, 738, 1078
LguI GCTCTTC 1 cut(s) 710
LmnI GCTCC 2 cut(s) 89, 579
Lsp1109I GCAGC 2 cut(s) 680, 736
LweI GCATC 2 cut(s) 1015, 1052
MaeI CTAG 1 cut(s) 369
MaeII ACGT 4 cut(s) 32, 438, 961, 1159
MaeIII GTNAC 6 cut(s) 232, 250, 337, 451, 953, 1000
MalI GATC 3 cut(s) 534, 740, 1080
MboI GATC 3 cut(s) 532, 738, 1078
MboII GAAGA 2 cut(s) 697, 1034
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 4 cut(s) 94, 102, 265, 705
MluCI AATT 5 cut(s) 331, 555, 891, 903, 945
MlyI GAGTC 2 cut(s) 200, 485
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 8 cut(s) 277, 306, 487, 580, 609, 811, 892, 931
Mph1103I ATGCAT 1 cut(s) 1030
MroXI GAANNNNTTC 2 cut(s) 602, 679
MseI TTAA 5 cut(s) 5, 207, 662, 864, 933
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 1101
MspI CCGG 2 cut(s) 409, 624
MspR9I CCNGG 1 cut(s) 1087
Mva1269I GAATGC 2 cut(s) 553, 1028
MvaI CCWGG 1 cut(s) 1087
MwoI GCNNNNNNNGC 2 cut(s) 557, 629
NcoI CCATGG 1 cut(s) 246
NdeII GATC 3 cut(s) 532, 738, 1078
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 7 cut(s) 198, 240, 250, 376, 519, 546, 807
NlaIV GGNNCC 2 cut(s) 814, 1072
NmuCI GTSAC 2 cut(s) 232, 953
NsbI TGCGCA 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 1030
OliI CACNNNNGTG 1 cut(s) 960
PasI CCCWGGG 1 cut(s) 1086
PciSI GCTCTTC 1 cut(s) 710
PctI GAATGC 2 cut(s) 553, 1028
PdmI GAANNNNTTC 2 cut(s) 602, 679
PfeI GAWTC 2 cut(s) 431, 1091
PflMI CCANNNNNTGG 1 cut(s) 965
PkrI GCNGC 3 cut(s) 24, 670, 726
PleI GAGTC 2 cut(s) 199, 484
PmaCI CACGTG 1 cut(s) 962
PmlI CACGTG 1 cut(s) 962
PpsI GAGTC 2 cut(s) 199, 484
Ppu21I YACGTR 2 cut(s) 962, 1160
PsiI TTATAA 2 cut(s) 345, 845
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 1085
PspCI CACGTG 1 cut(s) 962
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 1085
PspN4I GGNNCC 2 cut(s) 814, 1072
PspPI GGNCC 3 cut(s) 1071, 1083, 1163
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 1101
RseI CAYNNNNRTG 1 cut(s) 960
SacI GAGCTC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 710
SaqAI TTAA 5 cut(s) 5, 207, 662, 864, 933
SatI GCNGC 3 cut(s) 23, 669, 725
Sau3AI GATC 3 cut(s) 532, 738, 1078
Sau96I GGNCC 3 cut(s) 1071, 1083, 1163
SchI GAGTC 2 cut(s) 200, 485
ScrFI CCNGG 1 cut(s) 1087
SduI GDGCHC 4 cut(s) 94, 102, 265, 705
SfaNI GCATC 2 cut(s) 1015, 1052
SfcI CTRYAG 1 cut(s) 1047
SinI GGWCC 2 cut(s) 1071, 1163
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 5 cut(s) 331, 555, 891, 903, 945
SsiI CCGC 3 cut(s) 23, 199, 900
SspI AATATT 2 cut(s) 574, 1055
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 1085
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 5 cut(s) 69, 104, 485, 820, 1000
TaiI ACGT 4 cut(s) 35, 441, 964, 1162
TasI AATT 5 cut(s) 331, 555, 891, 903, 945
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 2 cut(s) 431, 1091
Tru1I TTAA 5 cut(s) 5, 207, 662, 864, 933
Tru9I TTAA 5 cut(s) 5, 207, 662, 864, 933
TscAI CASTG 3 cut(s) 531, 589, 823
TseFI GTSAC 2 cut(s) 232, 953
TseI GCWGC 2 cut(s) 668, 724
Tsp45I GTSAC 2 cut(s) 232, 953
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 2 cut(s) 491, 941
TspRI CASTG 3 cut(s) 531, 589, 823
Van91I CCANNNNNTGG 1 cut(s) 965
VneI GTGCAC 2 cut(s) 98, 261
VpaK11BI GGWCC 2 cut(s) 1071, 1163
XagI CCTNNNNNAGG 1 cut(s) 1010
XmnI GAANNNNTTC 2 cut(s) 602, 679
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.