Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008107

Physical Location & Seq

Genomic Coordinates Reverse (-)

15794249 .. 15795012

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23941.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACACTGACCCAGACGCTATCGAAGCTACTTGGTCTGAACCTCTCCTCTGGGTCATCACCAACCCCTCAAAACCTCACCAAGATCATATCTTTCTGCGCAGCATTGCCTTCTTTGGATTCGGGTAGTGCCCTTCACGCCATTGTTACCAAACTGGGTTTCTGCTCCAATGTCTATATACGCAGCGCACTCGTCGACATGTACGGCAAATGCAGCAAGTTGTGTAATGCTCAGAAGGTGTTCGACGAAACGCCTCACAGAAATGTAGTGACTTGGAACTCTCTGATTTCTGGGTACTTGCAAGCCGGCTCACCACTGAGAGCAGCTCGTTTGTTTCTGGACATGTTAAGGGTCGGAGAAGAGCCGCCGACGACGTTTAGTTTTTCGGGGGTGTTGGTGTGTTGCGCACAGTTGGAAGCTGAGGAGCTTGGAGCTCAGGTTCATGGGTTGAGCTTGAAAATGGGGCATTGTGATGATGTTTTGGTGGGGACAGGGTTGATAGATATGTATTCCAAGTGTGGTAAGGTTGGTGAGTCGCGGCATGTGTTTGATCAAATGCGGGACAGGAATGTTGTGACTTGGACTTCCATGGTTACTGGGTGTGCGCAGAGTGGACTGTCTGATGAAGCAATGAGTTTGGCAAACGCATTGCCGGATAGTGAAAGAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 Pkinase_Tyr

Protein Analysis

225

Amino Acids

24.1

Weight (kDa)

6.5

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	87 - 136	6.2e-08	PPR repeat family
PPR	PF01535	90 - 119	1.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008107)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23940 FvH4_1g23941
malus_domestica	MD11G1095500.v1.1
prunus_persica	Prupe.6G071000_v2.0.a1
pyrus_communis	pycom11g08090
rosa_chinensis	RchiOBHm_Chr2g0119991 RchiOBHm_Chr3g0477321
rosa_laevigata	RLG00000018506 RLG00000018509 RLG00000018742
rosa_multiflora	Rmu_sc0000657.1_g000021 Rmu_sc0006369.1_g000001 Rmu_sc0006369.1_g000002
rosa_roxburghii	Rroxscaffold_2G00103950 Rroxscaffold_2G00123790 Rroxscaffold_2G00123880 Rroxscaffold_2G00123910 Rroxscaffold_5G00352290 Rroxscaffold_5G00352300
rosa_samantha	Rh2AG282900 Rh2BG294100 Rh3DG236700
rosa_wichuraiana	Rw2G022590 Rw2G022610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	100, 406, 606
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	538
AciI	CCGC	3 cut(s)	365, 538, 559
AfaI	GTAC	2 cut(s)	203, 296
AflIII	ACRYGT	2 cut(s)	198, 342
AgsI	TTSAA	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	6 cut(s)	28, 326, 419, 427, 434, 453
AluI	AGCT	6 cut(s)	28, 326, 419, 427, 434, 453
Alw21I	GWGCWC	1 cut(s)	436
ApeKI	GCWGC	4 cut(s)	101, 183, 213, 323
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	4 cut(s)	101, 188, 407, 607
AsuHPI	GGTGA	4 cut(s)	51, 70, 303, 542
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	436
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	4 cut(s)	113, 195, 225, 335
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BclI	TGATCA	1 cut(s)	550
BisI	GCNGC	6 cut(s)	102, 184, 214, 324, 365, 539
BlsI	GCNGC	6 cut(s)	103, 185, 215, 325, 366, 540
BmrI	ACTGGG	2 cut(s)	164, 606
BmuI	ACTGGG	2 cut(s)	164, 606
BplI	GAGNNNNNCTC	2 cut(s)	310, 342
Bpu10I	CCTNAGC	2 cut(s)	420, 435
BsaJI	CCNNGG	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	159, 601
Bse3DI	GCAATG	3 cut(s)	104, 636, 647
BseDI	CCNNGG	1 cut(s)	588
BseMI	GCAATG	3 cut(s)	104, 636, 647
BseMII	CTCAG	4 cut(s)	245, 308, 411, 449
BseNI	ACTGG	2 cut(s)	159, 601
BseRI	GAGGAG	2 cut(s)	37, 437
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	113, 195, 225, 335
Bsh1236I	CGCG	1 cut(s)	538
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	306, 653
BslFI	GGGAC	2 cut(s)	502, 575
BsmFI	GGGAC	2 cut(s)	502, 575
Bsp1286I	GDGCHC	2 cut(s)	133, 436
Bsp143I	GATC	2 cut(s)	84, 550
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	3 cut(s)	365, 538, 559
BspCNI	CTCAG	4 cut(s)	244, 309, 412, 448
BspFNI	CGCG	1 cut(s)	538
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	3 cut(s)	104, 636, 647
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	159, 601
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	2 cut(s)	84, 550
BssT1I	CCWWGG	1 cut(s)	588
Bst4CI	ACNGT	2 cut(s)	411, 618
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	303, 307
BstDEI	CTNAG	4 cut(s)	231, 317, 420, 435
BstDSI	CCRYGG	1 cut(s)	588
BstFNI	CGCG	1 cut(s)	538
BstHHI	GCGC	4 cut(s)	101, 188, 407, 607
BstKTI	GATC	2 cut(s)	87, 553
BstMBI	GATC	2 cut(s)	84, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 137, 213
BstNSI	RCATGY	3 cut(s)	202, 346, 545
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	113, 195, 225, 335
BtgI	CCRYGG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	5, 314
Cac8I	GCNNGC	2 cut(s)	303, 307
CfoI	GCGC	4 cut(s)	101, 188, 407, 607
Cfr10I	RCCGGY	1 cut(s)	305
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	202, 295
CviAII	CATG	5 cut(s)	199, 343, 443, 542, 589
CviJI	RGCY	9 cut(s)	28, 305, 309, 326, 364, 419, 427, 434, 453
CviKI_1	RGCY	9 cut(s)	28, 305, 309, 326, 364, 419, 427, 434, 453
CviQI	GTAC	2 cut(s)	202, 295
DdeI	CTNAG	4 cut(s)	231, 317, 420, 435
DpnI	GATC	2 cut(s)	86, 552
DpnII	GATC	2 cut(s)	84, 550
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	5 cut(s)	202, 346, 446, 545, 592
FaiI	YATR	9 cut(s)	89, 177, 179, 200, 344, 444, 506, 543, 590
FaqI	GGGAC	2 cut(s)	502, 575
FatI	CATG	5 cut(s)	198, 342, 442, 541, 588
FauI	CCCGC	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	102, 184, 214, 324, 365, 539
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	6 cut(s)	102, 184, 214, 324, 365, 539
FspI	TGCGCA	3 cut(s)	100, 406, 606
GlaI	GCGC	4 cut(s)	100, 187, 406, 606
GluI	GCNGC	6 cut(s)	102, 184, 214, 324, 365, 539
HapII	CCGG	2 cut(s)	306, 653
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	4 cut(s)	101, 188, 407, 607
Hin1II	CATG	5 cut(s)	202, 346, 446, 545, 592
Hin6I	GCGC	4 cut(s)	99, 186, 405, 605
HinP1I	GCGC	4 cut(s)	99, 186, 405, 605
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	119, 533
HpaII	CCGG	2 cut(s)	306, 653
HphI	GGTGA	4 cut(s)	51, 70, 303, 542
Hpy166II	GTNNAC	2 cut(s)	196, 614
Hpy188I	TCNGA	5 cut(s)	39, 234, 285, 356, 622
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	2 cut(s)	196, 614
Hpy99I	CGWCG	4 cut(s)	197, 248, 373, 376
HpyAV	CCTTC	4 cut(s)	120, 143, 229, 660
HpyCH4III	ACNGT	2 cut(s)	411, 618
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	213, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 137, 213
HpyF3I	CTNAG	4 cut(s)	231, 317, 420, 435
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	5 cut(s)	202, 346, 446, 545, 592
HspAI	GCGC	4 cut(s)	99, 186, 405, 605
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	84, 550
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	3 cut(s)	170, 424, 431
Lsp1109I	GCAGC	4 cut(s)	113, 195, 225, 335
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	4 cut(s)	145, 268, 574, 592
MalI	GATC	2 cut(s)	86, 552
MboI	GATC	2 cut(s)	84, 550
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	133, 436
MlyI	GAGTC	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	334, 393
MnlI	CCTC	6 cut(s)	53, 58, 78, 86, 264, 415
MroNI	GCCGGC	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	261, 471
MspI	CCGG	2 cut(s)	306, 653
MvnI	CGCG	1 cut(s)	538
MwoI	GCNNNNNNNGC	3 cut(s)	25, 137, 213
NaeI	GCCGGC	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	2 cut(s)	84, 550
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	5 cut(s)	202, 346, 446, 545, 592
NmuCI	GTSAC	2 cut(s)	268, 574
NsbI	TGCGCA	3 cut(s)	100, 406, 606
NspI	RCATGY	3 cut(s)	202, 346, 545
PciI	ACATGT	2 cut(s)	198, 342
PciSI	GCTCTTC	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	6 cut(s)	103, 185, 215, 325, 366, 540
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PscI	ACATGT	2 cut(s)	198, 342
Psp124BI	GAGCTC	1 cut(s)	436
RsaI	GTAC	2 cut(s)	203, 296
RsaNI	GTAC	2 cut(s)	202, 295
RseI	CAYNNNNRTG	2 cut(s)	261, 471
SacI	GAGCTC	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	6 cut(s)	102, 184, 214, 324, 365, 539
Sau3AI	GATC	2 cut(s)	84, 550
SchI	GAGTC	1 cut(s)	542
SduI	GDGCHC	2 cut(s)	133, 436
SmiMI	CAYNNNNRTG	2 cut(s)	261, 471
SsiI	CCGC	3 cut(s)	365, 538, 559
SstI	GAGCTC	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	2 cut(s)	411, 618
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	3 cut(s)	23, 195, 243
TauI	GCSGC	2 cut(s)	367, 541
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	2 cut(s)	12, 321
TseFI	GTSAC	2 cut(s)	268, 574
TseI	GCWGC	4 cut(s)	101, 183, 213, 323
Tsp45I	GTSAC	2 cut(s)	268, 574
TspDTI	ATGAA	2 cut(s)	431, 639
TspRI	CASTG	2 cut(s)	12, 321
XceI	RCATGY	3 cut(s)	202, 346, 545
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.