Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Reverse (-)

19276290 .. 19277772

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27612.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATCTACAAGTTGCTACGTCTAATATTAACGGTTTCTTCACAGCATCGAATGTGGTAGTTAGTGGTAGTGCAAACACAACCATCTATGGTGTGGCACAATGTGCCGAGACAACTAGCCAAATTGGTTGCCTAGATTGTTTAAAGGTGGCATACACCAATGTACAGAGCTGCCTTCCTGATACAGATGGTAGGGCAGTTGATGCTGGTTGTTTCTTGAGGTACTCTGCTACTTCTTTCTTCCCAGATAACCAGACTACTAATATCACGCCTTTCTTTAAAAAGGGAGGTAATTCAACAAAGAAGGCTATCATCATTGGAGTAGTAGTTGGAGGTGTAGGTCTTATATTCCTCGTTGCCGGATTTCTTGTCTATAATAGACTTTCAAGGAAGCCAAAGACAATTAGCAGAGGAGACATTTTGGGAGCAACCGAGTTGCAAGGTCCAGTGAATTATAAGTATAAGGATTTGAAGTCGGTAACAGAAAATTTTAGTGATGAAAATAAACTAGGAGAAGGAGGATTTGGGGATGTCTACAAGGCTACTCTAAACAATGGGAAAACAGTTGCAGTAAAGAAACTAGCAATACTTCAAACAGACAGGGCAATGACAAGTTTTGAAAATGAAGTCAAGCTTATAAGTAATGTGCATCACCGGAATCTAATTCGCCTTCTCGGATGTTGTAGCAAAGGACCAGAATTACTTCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

238

Amino Acids

25.46

Weight (kDa)

8.92

Isoelectric Point (pI)

21.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	10 - 77	5.5e-10	Salt stress response/antifungal
Pkinase	PF00069	165 - 237	5.3e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	167 - 237	9.3e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	456, 638
AccI	GTMKAC	1 cut(s)	534
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	487
AdeI	CACNNNGTG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	165, 224
AgsI	TTSAA	5 cut(s)	297, 387, 472, 593, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	2 cut(s)	171, 634
AluI	AGCT	2 cut(s)	171, 634
Alw26I	GTCTC	2 cut(s)	104, 408
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	443, 692
AsuHPI	GGTGA	1 cut(s)	644
AvaII	GGWCC	2 cut(s)	443, 692
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	92, 182
BcoDI	GTCTC	2 cut(s)	104, 408
BfaI	CTAG	4 cut(s)	117, 134, 509, 581
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme18I	GGWCC	2 cut(s)	443, 692
BmgT120I	GGNCC	2 cut(s)	443, 692
BmsI	GCATC	3 cut(s)	56, 193, 658
BpuEI	CTTGAG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	654
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	612
BseGI	GGATG	2 cut(s)	535, 683
BseMI	GCAATG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	360, 655
BsmAI	GTCTC	2 cut(s)	104, 408
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	4
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	446
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	2 cut(s)	35, 565
BstAPI	GCANNNNNTGC	2 cut(s)	104, 203
BstAUI	TGTACA	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	535, 683
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	104, 408
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 203
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	535, 683
BtsIMutI	CAGTG	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	443, 692
Csp6I	GTAC	2 cut(s)	164, 223
CviJI	RGCY	6 cut(s)	120, 171, 308, 394, 542, 634
CviKI_1	RGCY	6 cut(s)	120, 171, 308, 394, 542, 634
CviQI	GTAC	2 cut(s)	164, 223
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	2 cut(s)	144, 280
DraIII	CACNNNGTG	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	443, 692
FaiI	YATR	7 cut(s)	90, 154, 347, 375, 456, 462, 638
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	2 cut(s)	542, 690
Fsp4HI	GCNGC	1 cut(s)	172
FspBI	CTAG	4 cut(s)	117, 134, 509, 581
GluI	GCNGC	1 cut(s)	172
HapII	CCGG	2 cut(s)	360, 655
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	1 cut(s)	658
HpaII	CCGG	2 cut(s)	360, 655
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	2 cut(s)	677, 708
Hpy188III	TCNNGA	2 cut(s)	179, 217
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	4 cut(s)	185, 298, 509, 680
HpyCH4III	ACNGT	2 cut(s)	35, 565
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	4 cut(s)	74, 439, 569, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 203
HpySE526I	ACGT	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	9 cut(s)	192, 192, 258, 266, 373, 459, 586, 668, 708
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	56, 193, 658
MaeI	CTAG	4 cut(s)	117, 134, 509, 581
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	31, 232
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	7 cut(s)	123, 292, 402, 451, 487, 663, 698
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	213, 281, 326, 362, 404, 512
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	3 cut(s)	30, 143, 279
MspI	CCGG	2 cut(s)	360, 655
MwoI	GCNNNNNNNGC	2 cut(s)	104, 203
NdeII	GATC	1 cut(s)	4
NmeAIII	GCCGAG	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	1 cut(s)	173
PsiI	TTATAA	2 cut(s)	456, 638
PspPI	GGNCC	2 cut(s)	443, 692
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	165, 224
RsaNI	GTAC	2 cut(s)	164, 223
SaqAI	TTAA	3 cut(s)	30, 143, 279
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	443, 692
SetI	ASST	9 cut(s)	23, 150, 173, 224, 292, 337, 343, 445, 636
SfaNI	GCATC	3 cut(s)	56, 193, 658
SinI	GGWCC	2 cut(s)	443, 692
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	7 cut(s)	123, 292, 402, 451, 487, 663, 698
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	4 cut(s)	117, 134, 509, 581
TaaI	ACNGT	2 cut(s)	35, 565
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	50
TasI	AATT	7 cut(s)	123, 292, 402, 451, 487, 663, 698
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	3 cut(s)	30, 143, 279
Tru9I	TTAA	3 cut(s)	30, 143, 279
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	513, 639
TspRI	CASTG	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	443, 692
XapI	RAATTY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	4 cut(s)	117, 134, 509, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.