Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Forward (+)

33102917 .. 33108107

Gene Structure 5191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG321600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATGAATAAGAAGATATTGACAACACTGTCAATAATTACGATCAGCCAGATATGGTGGTGGGCTTGTGTGAGTGCAGACCCGCAGATCAATCTTCTGAACGAGGGTTGCAGCCAGTACAACGCAACCAGCCTGTCCAACTTCTATACCAATCTCAACGCCACTTTCTTGGACCTCAAAGCGCAACTACTCAACGGCAGCAAACACTTTGCAACGGCCCAACAGGCCAAGGGCTCCGACCCCGTCTACGCCATGACGCAGTGTAGGAACTACCTCTCCTCCGCCGACTGTCTATCTTGCTTTGCCGCCGCCGTCTCCCAAATCCGCAACTGCTCTGCCTCCAATGGCGCACGCGTCGTCTACGACGGCTGCTTCCTCCGGTATGAGAGCAGTGGTTTTTTTGACCAGACTGTAGCTACCCTTCCTGGTAATGTAGGACTCTGTGGGAATCAAACTGGATCGCCTGCTACAACCTTTACTGCAGCTGCTGAAGAACTTCTAATGGATCTTCAAGTTGCTACGCCCAAGATTAATGGCTTCTTCGCAGCATCTAAGGAGGTAGTTAGCAGTAGTGGAAACACAACAGTCTATGGTGTGGCACAATGTGCCGAGACAACTACCGTAACTGGTTGCCAAGATTGTTTGAAGGTGGCATACACCAATGTACAGAGTTGCCTTCCCGATACAGACGGTAGAGCAGTTGATGCCGGTTGTTTCTTGAGGTACTCTGCTACTTCTTTCTTCCCAGATAACCAGACTACTAATATCACACCTTTCTTAGAGAAAGGTACGCAAGATCTCTTACTTCTAGATGCTTATTCAGCTAGTCCTATCATCCAAGCCTGGAAACTCTATGAGAACGGCCAGCACTTGAAGTTGGTCGATGAAACATTGGATCCCAACGATTATGAAGCAGAAGATGTGAAAAAGATAGTTGAGATTGCTCTAATGTGCACTCAATCATCACCTGCTCTAAGGCCAACAATGTCTGAAATTGTTGTTTTACTCAAAAGCACAGGCTCTTGGGTAAATAGGCCGCTTACTAGGCCTGTGTTTGTTGATTCTGACCATAAAAGAGTACGGGTGGACACGTCAACTTCTACTGGTTCCTCATCATCCAATGCTACCGCATCCATCTCTCAACTTTCAGGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

385

Amino Acids

41.57

Weight (kDa)

5.07

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	37 - 130	1.4e-17	Salt stress response/antifungal
Stress-antifung	PF01657	148 - 244	3.6e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	976
AasI	GACNNNNNNGTC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	976
AccI	GTMKAC	2 cut(s)	246, 360
AccII	CGCG	1 cut(s)	354
AciI	CCGC	7 cut(s)	83, 282, 306, 309, 325, 1037, 1128
AclWI	GGATC	4 cut(s)	466, 513, 890, 903
AcoI	YGGCCR	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	510
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	5 cut(s)	119, 666, 725, 790, 1080
AflIII	ACRYGT	2 cut(s)	352, 1089
AgsI	TTSAA	3 cut(s)	512, 646, 874
AjiI	CACGTC	1 cut(s)	1092
AjnI	CCWGG	2 cut(s)	424, 842
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	3 cut(s)	416, 485, 824
AluI	AGCT	3 cut(s)	416, 485, 824
Alw21I	GWGCWC	1 cut(s)	956
Alw26I	GTCTC	2 cut(s)	319, 605
Alw44I	GTGCAC	1 cut(s)	952
AlwI	GGATC	4 cut(s)	466, 513, 890, 903
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	6 cut(s)	216, 225, 862, 977, 1034, 1046
ApaLI	GTGCAC	1 cut(s)	952
ApeKI	GCWGC	6 cut(s)	111, 198, 369, 482, 485, 545
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	184, 350
AspS9I	GGNCC	2 cut(s)	172, 217
AsuHPI	GGTGA	1 cut(s)	957
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	956
BamHI	GGATCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	4 cut(s)	405, 437, 638, 670
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	6 cut(s)	123, 210, 356, 472, 494, 557
BccI	CCATC	1 cut(s)	1142
BceAI	ACGGC	5 cut(s)	211, 231, 296, 382, 877
BciT130I	CCWGG	2 cut(s)	426, 844
BcoDI	GTCTC	2 cut(s)	319, 605
BfaI	CTAG	3 cut(s)	809, 825, 1044
BfmI	CTRYAG	2 cut(s)	411, 480
BfuAI	ACCTGC	1 cut(s)	976
BglI	GCCNNNNNGGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	9 cut(s)	112, 199, 306, 309, 370, 483, 486, 546, 1037
BlsI	GCNGC	9 cut(s)	113, 200, 307, 310, 371, 484, 487, 547, 1038
Bme1390I	CCNGG	2 cut(s)	426, 844
Bme18I	GGWCC	1 cut(s)	172
BmgBI	CACGTC	1 cut(s)	1092
BmgT120I	GGNCC	2 cut(s)	172, 217
BmiI	GGNNCC	3 cut(s)	235, 897, 1108
BmrFI	CCNGG	2 cut(s)	426, 844
BmsI	GCATC	4 cut(s)	557, 694, 802, 1139
BpuEI	CTTGAG	1 cut(s)	739
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 263, 290, 293
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	4 cut(s)	115, 460, 631, 1108
BseBI	CCWGG	2 cut(s)	426, 844
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	834, 1115, 1130
BseNI	ACTGG	4 cut(s)	115, 460, 631, 1108
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	956
BseXI	GCAGC	6 cut(s)	123, 210, 356, 472, 494, 557
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	6 cut(s)	218, 227, 864, 979, 1036, 1048
BsiHKAI	GWGCWC	1 cut(s)	956
BsiSI	CCGG	2 cut(s)	379, 708
BsmAI	GTCTC	2 cut(s)	319, 605
BsmBI	CGTCTC	1 cut(s)	319
BsnI	GGCC	6 cut(s)	218, 227, 864, 979, 1036, 1048
Bsp1286I	GDGCHC	2 cut(s)	236, 956
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
BspACI	CCGC	7 cut(s)	83, 282, 306, 309, 325, 1037, 1128
BspANI	GGCC	6 cut(s)	218, 227, 864, 979, 1036, 1048
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	235, 897, 1108
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	4 cut(s)	466, 513, 890, 903
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	115, 460, 631, 1108
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	426, 844
Bst4CI	ACNGT	6 cut(s)	30, 290, 412, 586, 622, 692
BstAPI	GCANNNNNTGC	2 cut(s)	605, 704
BstAUI	TGTACA	1 cut(s)	664
BstC8I	GCNNGC	3 cut(s)	352, 465, 866
BstDEI	CTNAG	3 cut(s)	552, 778, 974
BstF5I	GGATG	3 cut(s)	834, 1115, 1130
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	184, 350
BstKTI	GATC	6 cut(s)	45, 90, 461, 508, 799, 898
BstMAI	GTCTC	2 cut(s)	319, 605
BstMBI	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 605, 704, 821, 1045
BstNI	CCWGG	2 cut(s)	426, 844
BstSCI	CCNGG	2 cut(s)	424, 842
BstSFI	CTRYAG	2 cut(s)	411, 480
BstSLI	GKGCMC	1 cut(s)	956
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	123, 210, 356, 472, 494, 557
BstX2I	RGATCY	3 cut(s)	505, 796, 895
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	3 cut(s)	505, 796, 895
BsuRI	GGCC	6 cut(s)	218, 227, 864, 979, 1036, 1048
BtrI	CACGTC	1 cut(s)	1092
BtsCI	GGATG	3 cut(s)	834, 1115, 1130
BtsI	GCAGTG	2 cut(s)	266, 397
BtsIMutI	CAGTG	3 cut(s)	26, 266, 397
BveI	ACCTGC	1 cut(s)	976
Cac8I	GCNNGC	3 cut(s)	352, 465, 866
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	2 cut(s)	184, 350
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	2 cut(s)	172, 217
CseI	GACGC	2 cut(s)	265, 343
Csp6I	GTAC	5 cut(s)	118, 665, 724, 789, 1079
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	5 cut(s)	118, 665, 724, 789, 1079
DdeI	CTNAG	3 cut(s)	552, 778, 974
DpnI	GATC	6 cut(s)	44, 89, 460, 507, 798, 897
DpnII	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
DraIII	CACNNNGTG	1 cut(s)	605
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	862
EciI	GGCGGA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	424, 842
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	1 cut(s)	256
FaiI	YATR	9 cut(s)	55, 147, 254, 384, 591, 655, 855, 909, 1071
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	2 cut(s)	246, 360
Fnu4HI	GCNGC	9 cut(s)	112, 199, 306, 309, 370, 483, 486, 546, 1037
FokI	GGATG	3 cut(s)	821, 1102, 1117
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	9 cut(s)	112, 199, 306, 309, 370, 483, 486, 546, 1037
FspBI	CTAG	3 cut(s)	809, 825, 1044
GlaI	GCGC	2 cut(s)	183, 349
GluI	GCNGC	9 cut(s)	112, 199, 306, 309, 370, 483, 486, 546, 1037
HaeIII	GGCC	6 cut(s)	218, 227, 864, 979, 1036, 1048
HapII	CCGG	2 cut(s)	379, 708
HgaI	GACGC	2 cut(s)	265, 343
HhaI	GCGC	2 cut(s)	184, 350
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	2 cut(s)	182, 348
HinP1I	GCGC	2 cut(s)	182, 348
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HinfI	GANTC	3 cut(s)	438, 448, 1061
HpaII	CCGG	2 cut(s)	379, 708
HphI	GGTGA	1 cut(s)	957
Hpy166II	GTNNAC	5 cut(s)	247, 361, 954, 1087, 1095
Hpy188I	TCNGA	4 cut(s)	99, 238, 991, 1066
Hpy188III	TCNNGA	3 cut(s)	680, 718, 809
Hpy8I	GTNNAC	5 cut(s)	247, 361, 954, 1087, 1095
Hpy99I	CGWCG	2 cut(s)	359, 368
HpyAV	CCTTC	3 cut(s)	431, 640, 686
HpyCH4III	ACNGT	6 cut(s)	30, 290, 412, 586, 622, 692
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	5 cut(s)	77, 111, 212, 482, 954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 605, 704, 821, 1045
HpyF3I	CTNAG	3 cut(s)	552, 778, 974
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	2 cut(s)	182, 348
Kzo9I	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	6 cut(s)	123, 210, 356, 472, 494, 557
LweI	GCATC	4 cut(s)	557, 694, 802, 1139
MaeI	CTAG	3 cut(s)	809, 825, 1044
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	6 cut(s)	44, 89, 460, 507, 798, 897
MboI	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
MboII	GAAGA	7 cut(s)	25, 86, 500, 503, 532, 733, 929
MflI	RGATCY	3 cut(s)	505, 796, 895
MhlI	GDGCHC	2 cut(s)	236, 956
MluCI	AATT	2 cut(s)	36, 993
MluI	ACGCGT	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	162, 261
MnlI	CCTC	9 cut(s)	97, 185, 284, 289, 349, 386, 550, 714, 1120
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	379, 708
MspR9I	CCNGG	2 cut(s)	426, 844
MvaI	CCWGG	2 cut(s)	426, 844
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	224, 605, 704, 821, 1045
NdeII	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	3 cut(s)	235, 897, 1108
NmeAIII	GCCGAG	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	976
PceI	AGGCCT	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	448, 1061
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	9 cut(s)	113, 200, 307, 310, 371, 484, 487, 547, 1038
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PshBI	ATTAAT	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	424, 842
PspGI	CCWGG	2 cut(s)	424, 842
PspN4I	GGNNCC	3 cut(s)	235, 897, 1108
PspPI	GGNCC	2 cut(s)	172, 217
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	3 cut(s)	505, 796, 895
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	5 cut(s)	119, 666, 725, 790, 1080
RsaNI	GTAC	5 cut(s)	118, 665, 724, 789, 1079
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	9 cut(s)	112, 199, 306, 309, 370, 483, 486, 546, 1037
Sau3AI	GATC	6 cut(s)	42, 87, 458, 505, 796, 895
Sau96I	GGNCC	2 cut(s)	172, 217
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	426, 844
SduI	GDGCHC	2 cut(s)	236, 956
SfaNI	GCATC	4 cut(s)	557, 694, 802, 1139
SfcI	CTRYAG	2 cut(s)	411, 480
SfiI	GGCCNNNNNGGCC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
Sse9I	AATT	2 cut(s)	36, 993
SseBI	AGGCCT	1 cut(s)	1048
SsiI	CCGC	7 cut(s)	83, 282, 306, 309, 325, 1037, 1128
SspMI	CTAG	3 cut(s)	809, 825, 1044
StuI	AGGCCT	1 cut(s)	1048
StyD4I	CCNGG	2 cut(s)	424, 842
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	6 cut(s)	30, 290, 412, 586, 622, 692
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	1 cut(s)	882
TasI	AATT	2 cut(s)	36, 993
TatI	WGTACW	2 cut(s)	117, 664
TauI	GCSGC	3 cut(s)	308, 311, 1039
TfiI	GAWTC	2 cut(s)	448, 1061
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	3 cut(s)	33, 266, 397
TseI	GCWGC	6 cut(s)	111, 198, 369, 482, 485, 545
TspDTI	ATGAA	3 cut(s)	20, 900, 924
TspRI	CASTG	3 cut(s)	33, 266, 397
Tth111I	GACNNNGTC	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	952
VpaK11BI	GGWCC	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	531
XbaI	TCTAGA	1 cut(s)	808
XmiI	GTMKAC	2 cut(s)	246, 360
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	3 cut(s)	809, 825, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.