Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Forward (+)

3414762 .. 3415948

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATGAATAAGAAGATATTGACAACACTGTCAATAATTACGATCAGCCAGATATGGTGGTGGGGTTGTGTGAGTGCAGAACCGCAGATCAGTCTGCTGAACGAGGGTTGCAGCCAGTACAACGCAACCAGCTTGTCCAACTTCTATATCAATCTCAACGCCACTTTCTTGGAACTCAAAGCGCAACTACTCAACGGCAGCAAACACTTTGCAACGGCGCAACAGGTCAAGGGCTCCGACCCCGTCCACGCCATGGCGCAGTGTAGGAACTACCTCTCCTCCGCCGACTGTCTATCTTGCTTTGCCGCCGCCGTCTCCCAAATCCGCAACTGCTCTGCCTCCAATGGCGCACGCGTCGTCTATGACGGCTGCTTCCTCCGGTATGAGAGCAGTGGTCTTTTTTTTTACCAGACTGTAGCTACCCTTCCTGGTAATGTAGGACTCTGTGGGAATCAAACTGGATCGCCTGCTACAACCTTTACTGCAGCTGCTGAAGAACTTCTAATGGATCTTCAAGTTGCTACGCCCAAGATTAATGGCTTCTTTGCAGCATCTAAGGAGACTTTCAAGGAAGCCCAAAACGGTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

196

Amino Acids

21.16

Weight (kDa)

6.7

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	37 - 130	4.1e-17	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccII	CGCG	1 cut(s)	354
AciI	CCGC	5 cut(s)	83, 282, 306, 309, 325
AclWI	GGATC	2 cut(s)	469, 516
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	515, 568
AjnI	CCWGG	1 cut(s)	427
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	3 cut(s)	132, 419, 488
AluI	AGCT	3 cut(s)	132, 419, 488
Alw26I	GTCTC	2 cut(s)	319, 554
AlwI	GGATC	2 cut(s)	469, 516
AlwNI	CAGNNNCTG	1 cut(s)	491
ApeKI	GCWGC	6 cut(s)	111, 198, 369, 485, 488, 548
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	4 cut(s)	184, 220, 259, 350
BanII	GRGCYC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BbvI	GCAGC	6 cut(s)	123, 210, 356, 475, 497, 560
BceAI	ACGGC	4 cut(s)	211, 231, 296, 382
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	319, 554
BfmI	CTRYAG	2 cut(s)	414, 483
BisI	GCNGC	8 cut(s)	112, 199, 306, 309, 370, 486, 489, 549
BlsI	GCNGC	8 cut(s)	113, 200, 307, 310, 371, 487, 490, 550
Bme1390I	CCNGG	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	378
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 263, 290, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	115, 463
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	115, 463
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	6 cut(s)	123, 210, 356, 475, 497, 560
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	319, 554
BsmBI	CGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	42, 87, 461, 508
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	5 cut(s)	83, 282, 306, 309, 325
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	2 cut(s)	469, 516
BsrI	ACTGG	2 cut(s)	115, 463
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	4 cut(s)	42, 87, 461, 508
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	4 cut(s)	30, 290, 415, 584
BstC8I	GCNNGC	2 cut(s)	352, 468
BstDEI	CTNAG	1 cut(s)	555
BstDSI	CCRYGG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	4 cut(s)	184, 220, 259, 350
BstKTI	GATC	4 cut(s)	45, 90, 464, 511
BstMAI	GTCTC	2 cut(s)	319, 554
BstMBI	GATC	4 cut(s)	42, 87, 461, 508
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	414, 483
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	123, 210, 356, 475, 497, 560
BstX2I	RGATCY	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	252
BtsI	GCAGTG	2 cut(s)	266, 397
BtsIMutI	CAGTG	3 cut(s)	26, 266, 397
Cac8I	GCNNGC	2 cut(s)	352, 468
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	4 cut(s)	184, 220, 259, 350
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	9 cut(s)	48, 114, 132, 234, 369, 419, 488, 540, 575
CviKI_1	RGCY	9 cut(s)	48, 114, 132, 234, 369, 419, 488, 540, 575
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	4 cut(s)	44, 89, 463, 510
DpnII	GATC	4 cut(s)	42, 87, 461, 508
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	1 cut(s)	256
FaiI	YATR	5 cut(s)	55, 147, 254, 363, 384
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	8 cut(s)	112, 199, 306, 309, 370, 486, 489, 549
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	8 cut(s)	112, 199, 306, 309, 370, 486, 489, 549
GlaI	GCGC	4 cut(s)	183, 219, 258, 349
GluI	GCNGC	8 cut(s)	112, 199, 306, 309, 370, 486, 489, 549
HapII	CCGG	1 cut(s)	379
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	4 cut(s)	184, 220, 259, 350
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	4 cut(s)	182, 218, 257, 348
HinP1I	GCGC	4 cut(s)	182, 218, 257, 348
HinfI	GANTC	2 cut(s)	441, 451
HpaII	CCGG	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	4 cut(s)	30, 290, 415, 584
HpyCH4V	TGCA	5 cut(s)	77, 111, 212, 485, 548
HpyF3I	CTNAG	1 cut(s)	555
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	4 cut(s)	182, 218, 257, 348
Kzo9I	GATC	4 cut(s)	42, 87, 461, 508
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	6 cut(s)	123, 210, 356, 475, 497, 560
LweI	GCATC	1 cut(s)	560
MalI	GATC	4 cut(s)	44, 89, 463, 510
MboI	GATC	4 cut(s)	42, 87, 461, 508
MboII	GAAGA	3 cut(s)	25, 503, 506
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	1 cut(s)	36
MluI	ACGCGT	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	2 cut(s)	162, 261
MnlI	CCTC	5 cut(s)	97, 284, 289, 349, 386
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	4 cut(s)	42, 87, 461, 508
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	451
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	8 cut(s)	113, 200, 307, 310, 371, 487, 490, 550
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PshBI	ATTAAT	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	508
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	8 cut(s)	112, 199, 306, 309, 370, 486, 489, 549
Sau3AI	GATC	4 cut(s)	42, 87, 461, 508
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	6 cut(s)	134, 228, 276, 421, 479, 490
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	2 cut(s)	414, 483
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	5 cut(s)	83, 282, 306, 309, 325
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	4 cut(s)	30, 290, 415, 584
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	308, 311
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	3 cut(s)	33, 266, 397
TseI	GCWGC	6 cut(s)	111, 198, 369, 485, 488, 548
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	3 cut(s)	33, 266, 397
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.