Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Reverse (-)

46350094 .. 46364044

Gene Structure 13951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGCAGTGTAGGAACTACCTCTCCTCCGCCGACTGTTTATCTTGCTTTGCCGCCGCTGTCTCCCAAATCCACAACTGTTCTGCCTCCAATGGCGCACGCGTCATCTACGACGGCTGCTTCCTCCGGTATGAGGGCACTGGTTTTCTTGACCAGACTCAAGCAACCTCTCTTGGTAATGCAGGATTCTGTGGGAATCAAACTGAATCGCCTTCTACAACCTTTACTGCAGCTGCTGAAGAACTGCTAATGGATCTCCAAGTTGCTACGCCCAAGATTAATGGTTTCTTTGCAGCATCTAAGGAGGTAGAGAGCGGTAGTGGAAAGACTATCTATGGTGTGGCACAATGTGTCGAGACAACTTCCGAAACTGGTTGCCTAGATTGTTTGAAGGTGGCATACACTAATATACATAGATGCCTTCCCGATACAAATGGTAGGGCAGTTGATGCCGGTTGTTTCTTGAGGTACTCTGCTACTTCTTTCTTCCCAGATAACCAGACTACTAATATCAAGCCTTTCTTAGAAGAGGGAGGTAATTCAAGAAAGAAGGCCATCATCATTGGAGTAGTGGTTGGAGGTGTAGGTCTTATTTTACTCGTTGTTGGATTTTTTATCTATTTCAGACTTTCAAGGAAGCCCAAGACGGTTCGTAGAGGAGACATATTGGGAGCAACCGAGTTGCAAGGTCCAGTGAATTATAAGTATAAAGATTTGAAGTCGGCAACAGCAAATTTTAGTGATGCAAATAAACTAGGAGAAGGAGGATTCGGGGACGTCTACAAGGCAACTCTAAACAATGGGAAAACAGTTGCAGTAAAGAAACTAGCTATACTCCAATCAGACAAGGCAATGACAAGTTTCGAAAATGAAGTCAAGCTTATAAGTAATGTACATCACCGGAATCTAATTCGCCTTCTTGGATGTTGTAGCAAAGGACCAGAATTACTTCTGATATATGAATACATGGCAAACAACAGTCTGGACAAATTCTTGTTTGGTGAGAAAAGAGGCTCTCTAGACTGGAAGCAAAGGAATGATATAATCGTCGGTACAGCTAGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

355

Amino Acids

38.46

Weight (kDa)

8.6

Isoelectric Point (pI)

27.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	1 - 45	5.4e-10	Salt stress response/antifungal
Stress-antifung	PF01657	64 - 159	2e-13	Salt stress response/antifungal
Pkinase	PF00069	247 - 347	6.5e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	250 - 349	5.8e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	702, 884
AatII	GACGTC	1 cut(s)	780
AccBSI	CCGCTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	780
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	30, 54, 57, 315
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	733, 989
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	777
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	3 cut(s)	470, 894, 1054
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	391, 543, 633, 718
AloI	GAACNNNNNNTCC	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	233, 830, 880, 1058
AluI	AGCT	4 cut(s)	233, 830, 880, 1058
Alw26I	GTCTC	3 cut(s)	67, 350, 654
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	117, 230, 233, 293
ApoI	RAATTY	2 cut(s)	733, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	858, 890
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	948
AspLEI	GCGC	2 cut(s)	7, 98
AspS9I	GGNCC	2 cut(s)	689, 938
AsuHPI	GGTGA	2 cut(s)	890, 1013
AsuII	TTCGAA	1 cut(s)	864
AvaII	GGWCC	2 cut(s)	689, 938
BaeGI	GKGCMC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbvI	GCAGC	4 cut(s)	104, 220, 242, 305
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	67, 350, 654
BfaI	CTAG	6 cut(s)	380, 755, 827, 1019, 1059, 1066
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	6 cut(s)	54, 57, 118, 231, 234, 294
BlsI	GCNGC	6 cut(s)	55, 58, 119, 232, 235, 295
Bme18I	GGWCC	2 cut(s)	689, 938
BmgT120I	GGNCC	2 cut(s)	689, 938
BmsI	GCATC	4 cut(s)	305, 407, 439, 733
Bpu14I	TTCGAA	1 cut(s)	864
BpuEI	CTTGAG	2 cut(s)	144, 484
BsaHI	GRCGYC	1 cut(s)	777
BsaWI	WCCGGW	2 cut(s)	126, 900
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 11, 38, 41, 558, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	4 cut(s)	145, 376, 692, 1028
Bse3DI	GCAATG	1 cut(s)	858
BseGI	GGATG	1 cut(s)	929
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	858
BseNI	ACTGG	4 cut(s)	145, 376, 692, 1028
BseRI	GAGGAG	2 cut(s)	16, 672
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	104, 220, 242, 305
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	554
BsiSI	CCGG	3 cut(s)	127, 453, 901
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	67, 350, 654
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	864
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	892
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	4 cut(s)	30, 54, 57, 315
BspANI	GGCC	1 cut(s)	554
BspFNI	CGCG	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	864
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	858
BsrFI	RCCGGY	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	892
BsrI	ACTGG	4 cut(s)	145, 376, 692, 1028
BssAI	RCCGGY	1 cut(s)	452
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	777
Bst4CI	ACNGT	5 cut(s)	38, 80, 649, 811, 980
Bst6I	CTCTTC	1 cut(s)	522
BstACI	GRCGYC	1 cut(s)	777
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	892
BstBI	TTCGAA	1 cut(s)	864
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	300, 523
BstF5I	GGATG	1 cut(s)	929
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	2 cut(s)	7, 98
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	3 cut(s)	67, 350, 654
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	4 cut(s)	104, 220, 242, 305
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	929
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	3 cut(s)	14, 138, 699
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	2 cut(s)	7, 98
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	689, 938
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	469, 893, 1053
CviAII	CATG	1 cut(s)	967
CviJI	RGCY	9 cut(s)	117, 233, 517, 554, 640, 830, 880, 1014, 1058
CviKI_1	RGCY	9 cut(s)	117, 233, 517, 554, 640, 830, 880, 1014, 1058
CviQI	GTAC	3 cut(s)	469, 893, 1053
DdeI	CTNAG	2 cut(s)	300, 523
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DraIII	CACNNNGTG	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	689, 938
Eco57I	CTGAAG	1 cut(s)	258
FaeI	CATG	1 cut(s)	970
FalI	AAGNNNNNCTT	4 cut(s)	506, 538, 864, 896
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	1 cut(s)	966
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	6 cut(s)	54, 57, 118, 231, 234, 294
FokI	GGATG	1 cut(s)	936
Fsp4HI	GCNGC	6 cut(s)	54, 57, 118, 231, 234, 294
FspBI	CTAG	6 cut(s)	380, 755, 827, 1019, 1059, 1066
GlaI	GCGC	2 cut(s)	6, 97
GluI	GCNGC	6 cut(s)	54, 57, 118, 231, 234, 294
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	3 cut(s)	127, 453, 901
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	7, 98
Hin1I	GRCGYC	1 cut(s)	777
Hin1II	CATG	1 cut(s)	970
Hin6I	GCGC	2 cut(s)	5, 96
HinP1I	GCGC	2 cut(s)	5, 96
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	6 cut(s)	157, 186, 196, 206, 768, 904
HpaII	CCGG	3 cut(s)	127, 453, 901
HphI	GGTGA	2 cut(s)	890, 1013
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	4 cut(s)	367, 626, 844, 954
Hpy188III	TCNNGA	7 cut(s)	149, 355, 425, 463, 543, 983, 1019
Hpy8I	GTNNAC	1 cut(s)	781
Hpy99I	CGWCG	2 cut(s)	116, 1052
HpyAV	CCTTC	6 cut(s)	222, 385, 431, 544, 755, 926
HpyCH4III	ACNGT	5 cut(s)	38, 80, 649, 811, 980
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	6 cut(s)	182, 230, 293, 685, 746, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	2 cut(s)	300, 523
HpySE526I	ACGT	1 cut(s)	777
Hsp92I	GRCGYC	1 cut(s)	777
Hsp92II	CATG	1 cut(s)	970
HspAI	GCGC	2 cut(s)	5, 96
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	4 cut(s)	104, 220, 242, 305
LweI	GCATC	4 cut(s)	305, 407, 439, 733
MaeI	CTAG	6 cut(s)	380, 755, 827, 1019, 1059, 1066
MaeII	ACGT	1 cut(s)	777
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	251, 478, 539
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	6 cut(s)	538, 697, 733, 909, 944, 989
MluI	ACGCGT	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	556, 586
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	2 cut(s)	59, 233
MspI	CCGG	3 cut(s)	127, 453, 901
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	5 cut(s)	186, 196, 206, 768, 904
PkrI	GCNGC	6 cut(s)	55, 58, 119, 232, 235, 295
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	279
PsiI	TTATAA	2 cut(s)	702, 884
PspPI	GGNCC	2 cut(s)	689, 938
PstI	CTGCAG	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	3 cut(s)	470, 894, 1054
RsaNI	GTAC	3 cut(s)	469, 893, 1053
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	6 cut(s)	54, 57, 118, 231, 234, 294
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	689, 938
SchI	GAGTC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	4 cut(s)	305, 407, 439, 733
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	864
SinI	GGWCC	2 cut(s)	689, 938
SmlI	CTYRAG	2 cut(s)	159, 463
SmoI	CTYRAG	2 cut(s)	159, 463
Sse9I	AATT	6 cut(s)	538, 697, 733, 909, 944, 989
SsiI	CCGC	4 cut(s)	30, 54, 57, 315
SspMI	CTAG	6 cut(s)	380, 755, 827, 1019, 1059, 1066
TaaI	ACNGT	5 cut(s)	38, 80, 649, 811, 980
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	2 cut(s)	354, 864
TasI	AATT	6 cut(s)	538, 697, 733, 909, 944, 989
TatI	WGTACW	1 cut(s)	892
TauI	GCSGC	2 cut(s)	56, 59
TfiI	GAWTC	5 cut(s)	186, 196, 206, 768, 904
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	3 cut(s)	14, 145, 699
TseI	GCWGC	4 cut(s)	117, 230, 233, 293
TspDTI	ATGAA	2 cut(s)	885, 975
TspRI	CASTG	3 cut(s)	14, 145, 699
VpaK11BI	GGWCC	2 cut(s)	689, 938
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	2 cut(s)	733, 989
XbaI	TCTAGA	1 cut(s)	1018
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	6 cut(s)	380, 755, 827, 1019, 1059, 1066
ZraI	GACGTC	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.