Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008363.1

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Forward (+)

129685 .. 130227

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008363.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgatatattctctttcaggaggcaattcaagaaagaaggccatcatcattggagtagtggttggaggtgtaggtcttattttactcattgttggagttttgatctatttcagactttcaaggaagcccaagacggttcgtagaggagacatattgggagcaaccgatttgcaaggtccagtgaattataagtataaagatctgaagtcggcaacagcaaattttagtgatgcaaataagctaggagaaggaggattcggggacgtctacaaggtaaaagaaaatattacacaattagatgatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

102

Amino Acids

11.0

Weight (kDa)

9.7

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AatII	GACGTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	30, 120
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse1I	ACTGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	102, 199, 301
BspANI	GGCC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	3 cut(s)	102, 199, 301
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	264
BstKTI	GATC	3 cut(s)	105, 202, 304
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	102, 199, 301
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	176
CviJI	RGCY	3 cut(s)	41, 127, 241
CviKI_1	RGCY	3 cut(s)	41, 127, 241
DpnI	GATC	3 cut(s)	104, 201, 303
DpnII	GATC	3 cut(s)	102, 199, 301
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	224
FaiI	YATR	4 cut(s)	7, 152, 189, 195
FaqI	GGGAC	1 cut(s)	275
FblI	GTMKAC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	113, 204
Hpy188III	TCNNGA	2 cut(s)	18, 30
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	31, 242
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	172, 233
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	102, 199, 301
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	2 cut(s)	3, 192
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	104, 201, 303
MboI	GATC	3 cut(s)	102, 199, 301
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	4 cut(s)	25, 184, 220, 293
MmeI	TCCRAC	2 cut(s)	43, 73
MnlI	CCTC	4 cut(s)	14, 59, 137, 245
NdeII	GATC	3 cut(s)	102, 199, 301
PfeI	GAWTC	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	199
Sau3AI	GATC	3 cut(s)	102, 199, 301
Sau96I	GGNCC	1 cut(s)	176
SetI	ASST	6 cut(s)	70, 76, 178, 243, 267, 276
SfaNI	GCATC	1 cut(s)	220
SgeI	CNNG	9 cut(s)	30, 42, 132, 142, 185, 191, 254, 271, 283
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	4 cut(s)	25, 184, 220, 293
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	267
TasI	AATT	4 cut(s)	25, 184, 220, 293
TfiI	GAWTC	1 cut(s)	255
TscAI	CASTG	1 cut(s)	186
TspRI	CASTG	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.