Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Reverse (-)

18192429 .. 18193180

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGATCTCCAAGTTGCTACGCCCAAGATTAATGGCTTCTTTGCAGCATCTAAGGAGGTAGTTAGCGGTAGTGGAAACACAACGGTCTATGGTGTGGCACAATGTGCCGAGACAACTACCGAAACTGGTTGCCAAGATTGTTTGAAGGTGGCATACAGAAATATACTGAGTTGCCTTCCCGATACAGATGGTAGGGCAGTTGATGCCGGTTGTTTCTTGAGGTACTCTGCAACTTCTTTCTTCGCAGATAACCAGACTACTAATATCACGCCTTTCTTAGAAAAAGCAGGGCGTGCCGAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

102

Amino Acids

10.75

Weight (kDa)

4.69

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	11 - 77	1.5e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	12
AdeI	CACNNNGTG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmsI	GCATC	2 cut(s)	56, 193
BpuEI	CTTGAG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	104
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	159
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	206
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	1 cut(s)	85
BstAPI	GCANNNNNTGC	3 cut(s)	104, 203, 293
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	51, 167, 277
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 203, 293
BstV1I	GCAGC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	223
CviJI	RGCY	1 cut(s)	36
CviKI_1	RGCY	1 cut(s)	36
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	3 cut(s)	51, 167, 277
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraIII	CACNNNGTG	1 cut(s)	104
FaiI	YATR	3 cut(s)	90, 154, 164
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HapII	CCGG	1 cut(s)	207
HpaII	CCGG	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	179, 217
HpyAV	CCTTC	2 cut(s)	139, 185
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	44, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 203, 293
HpyF3I	CTNAG	3 cut(s)	51, 167, 277
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	111, 220, 266, 273
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	2 cut(s)	56, 193
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	4
MnlI	CCTC	2 cut(s)	49, 213
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	104, 203, 293
NdeII	GATC	1 cut(s)	4
NmeAIII	GCCGAG	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	4
SetI	ASST	3 cut(s)	60, 150, 224
SfaNI	GCATC	2 cut(s)	56, 193
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SsiI	CCGC	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.