Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Forward (+)

35283073 .. 35288941

Gene Structure 5869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45229

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATGAAGGTCATGATGAATAAGAAGATATTGACAACACTATCAATAATTACGATCAGCCAGATATGGTGGTGGGCTTGTGTGGGTGCAGACCCGCAGATCAATCTTCTGAACGAGGGTTGCAGCAATTACAACGCAACCAGCTTGTCCAACTTCCATGCCAATCTCAACGCCACTTTCTTGGACCTCAAAGCGCAACTACTCGACGGCAGCAAACACTTTGCTACGGCACAACAGGCCAAAGGCTCCGACCCCGTCTACGCCATGACGCAGTGTAGGAACTACCTCTCCTCCGCCGACTGTTTATCTTGCTTTGCCGCCGCTGTCTCCCAAATCCGCAACTGTTCTGCCTCCAATGGCGCACGCGTCATCTACGACGGCTGCTTCCTCCGGTATGAGGGCAGGGCCAGTGGTTTTTTTGACCAGACTGTAGCTACCCTTCCTGGTAATGAAGCACGCTGTGAGAATCAAACTGGATCGCCTGCTACAAACATTACTGCGGCTGCTGAAGAACTGCTAATGGATCTCCAAGTTGCTACGCCCAAGATTAATGGCTTCTTTGCAGCATCTAAGGAGGTAGTTAGCGGTAGTGGAAACACAACGGCCTATGGTGTGGCACAATGTGCCGAGACAACTACCGAAACTGGTTGCCAAGATTGTTTGAAGGTGGCATACACCAATATACAGAGTTGCCTTCCCGGTACAGGTGGTAGGGCAGTTGATGCCGGTTGCTTCTTGAGGTACTCTGCTACTTCTTTCTTCCCAGATAACCAGACTACTAATATCACGCCTTTCTTAGATCAAGGTACGCAAGATCTCTTACTTCTAGATGCTTATTCAGCTAGTCCTATCATCCAAGTACTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

289

Amino Acids

31.0

Weight (kDa)

4.9

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 133	2.1e-18	Salt stress response/antifungal
Stress-antifung	PF01657	154 - 250	7.8e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	366
AciI	CCGC	7 cut(s)	95, 294, 318, 321, 337, 500, 585
AclWI	GGATC	2 cut(s)	484, 531
AcuI	CTGAAG	1 cut(s)	528
AdeI	CACNNNGTG	2 cut(s)	461, 623
AfaI	GTAC	4 cut(s)	703, 743, 808, 861
AfiI	CCNNNNNNNGG	2 cut(s)	397, 704
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	3 cut(s)	144, 434, 842
AluI	AGCT	3 cut(s)	144, 434, 842
Alw26I	GTCTC	2 cut(s)	331, 623
AlwI	GGATC	2 cut(s)	484, 531
AoxI	GGCC	3 cut(s)	237, 405, 603
ApeKI	GCWGC	5 cut(s)	123, 210, 381, 503, 563
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	196, 362
AspS9I	GGNCC	2 cut(s)	184, 405
AsuC2I	CCSGG	1 cut(s)	699
AvaII	GGWCC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	4 cut(s)	423, 455, 656, 688
BbvI	GCAGC	5 cut(s)	135, 222, 368, 490, 575
BceAI	ACGGC	4 cut(s)	223, 243, 394, 618
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	331, 623
BfaI	CTAG	2 cut(s)	827, 843
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	8 cut(s)	124, 211, 318, 321, 382, 501, 504, 564
BlsI	GCNGC	8 cut(s)	125, 212, 319, 322, 383, 502, 505, 565
BmcAI	AGTACT	1 cut(s)	861
Bme1390I	CCNGG	2 cut(s)	444, 699
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	184, 405
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	444, 699
BmsI	GCATC	3 cut(s)	575, 712, 820
BpuEI	CTTGAG	1 cut(s)	757
BpuMI	CCSGG	1 cut(s)	699
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 275, 302, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 704
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	3 cut(s)	408, 478, 649
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	852
BseLI	CCNNNNNNNGG	2 cut(s)	397, 704
BseNI	ACTGG	3 cut(s)	408, 478, 649
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	5 cut(s)	135, 222, 368, 490, 575
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	239, 407, 605
BsiSI	CCGG	3 cut(s)	391, 699, 726
BslI	CCNNNNNNNGG	2 cut(s)	397, 704
BsmAI	GTCTC	2 cut(s)	331, 623
BsnI	GGCC	3 cut(s)	239, 407, 605
Bsp143I	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
BspACI	CCGC	7 cut(s)	95, 294, 318, 321, 337, 500, 585
BspANI	GGCC	3 cut(s)	239, 407, 605
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	484, 531
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	3 cut(s)	408, 478, 649
BssAI	RCCGGY	1 cut(s)	725
BssMI	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	302, 344, 430
BstAPI	GCANNNNNTGC	2 cut(s)	623, 722
BstC8I	GCNNGC	3 cut(s)	364, 457, 483
BstDEI	CTNAG	2 cut(s)	570, 796
BstF5I	GGATG	1 cut(s)	852
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	196, 362
BstKTI	GATC	6 cut(s)	57, 102, 479, 526, 802, 817
BstMAI	GTCTC	2 cut(s)	331, 623
BstMBI	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 623, 722, 839
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	442, 697
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	135, 222, 368, 490, 575
BstX2I	RGATCY	2 cut(s)	523, 814
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	2 cut(s)	523, 814
BsuRI	GGCC	3 cut(s)	239, 407, 605
BtsCI	GGATG	1 cut(s)	852
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	278, 415
Cac8I	GCNNGC	3 cut(s)	364, 457, 483
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	2 cut(s)	196, 362
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	184, 405
CseI	GACGC	2 cut(s)	277, 355
Csp6I	GTAC	4 cut(s)	702, 742, 807, 860
CviAII	CATG	3 cut(s)	13, 158, 265
CviQI	GTAC	4 cut(s)	702, 742, 807, 860
DdeI	CTNAG	2 cut(s)	570, 796
DpnI	GATC	6 cut(s)	56, 101, 478, 525, 801, 816
DpnII	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
DraIII	CACNNNGTG	2 cut(s)	461, 623
EciI	GGCGGA	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	528
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	3 cut(s)	16, 161, 268
FaiI	YATR	8 cut(s)	14, 67, 159, 266, 396, 609, 673, 683
FatI	CATG	3 cut(s)	12, 157, 264
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	8 cut(s)	124, 211, 318, 321, 382, 501, 504, 564
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	8 cut(s)	124, 211, 318, 321, 382, 501, 504, 564
FspBI	CTAG	2 cut(s)	827, 843
GlaI	GCGC	2 cut(s)	195, 361
GluI	GCNGC	8 cut(s)	124, 211, 318, 321, 382, 501, 504, 564
HaeIII	GGCC	3 cut(s)	239, 407, 605
HapII	CCGG	3 cut(s)	391, 699, 726
HgaI	GACGC	2 cut(s)	277, 355
HhaI	GCGC	2 cut(s)	196, 362
Hin1II	CATG	3 cut(s)	16, 161, 268
Hin6I	GCGC	2 cut(s)	194, 360
HinP1I	GCGC	2 cut(s)	194, 360
HinfI	GANTC	1 cut(s)	466
HpaII	CCGG	3 cut(s)	391, 699, 726
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	111, 250
Hpy188III	TCNNGA	3 cut(s)	13, 736, 827
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	209, 380
HpyAV	CCTTC	3 cut(s)	449, 658, 704
HpyCH4III	ACNGT	3 cut(s)	302, 344, 430
HpyCH4V	TGCA	3 cut(s)	89, 123, 563
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 623, 722, 839
HpyF3I	CTNAG	2 cut(s)	570, 796
Hsp92II	CATG	3 cut(s)	16, 161, 268
HspAI	GCGC	2 cut(s)	194, 360
Kzo9I	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	5 cut(s)	135, 222, 368, 490, 575
LweI	GCATC	3 cut(s)	575, 712, 820
MaeI	CTAG	2 cut(s)	827, 843
MalI	GATC	6 cut(s)	56, 101, 478, 525, 801, 816
MboI	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
MboII	GAAGA	4 cut(s)	37, 98, 521, 751
MflI	RGATCY	2 cut(s)	523, 814
MluCI	AATT	2 cut(s)	48, 127
MluI	ACGCGT	1 cut(s)	364
MmeI	TCCRAC	2 cut(s)	174, 273
MnlI	CCTC	9 cut(s)	109, 197, 296, 301, 361, 391, 398, 568, 732
MseI	TTAA	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	3 cut(s)	391, 699, 726
MspR9I	CCNGG	2 cut(s)	444, 699
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	236, 623, 722, 839
NciI	CCSGG	1 cut(s)	699
NdeII	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
NlaIII	CATG	3 cut(s)	16, 161, 268
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	652
PagI	TCATGA	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	466
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	8 cut(s)	125, 212, 319, 322, 383, 502, 505, 565
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	184, 405
PsuI	RGATCY	2 cut(s)	523, 814
PsyI	GACNNNGTC	1 cut(s)	254
RsaI	GTAC	4 cut(s)	703, 743, 808, 861
RsaNI	GTAC	4 cut(s)	702, 742, 807, 860
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	8 cut(s)	124, 211, 318, 321, 382, 501, 504, 564
Sau3AI	GATC	6 cut(s)	54, 99, 476, 523, 799, 814
Sau96I	GGNCC	2 cut(s)	184, 405
ScaI	AGTACT	1 cut(s)	861
ScrFI	CCNGG	2 cut(s)	444, 699
SfaNI	GCATC	3 cut(s)	575, 712, 820
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	2 cut(s)	48, 127
SsiI	CCGC	7 cut(s)	95, 294, 318, 321, 337, 500, 585
SspMI	CTAG	2 cut(s)	827, 843
StyD4I	CCNGG	2 cut(s)	442, 697
TaaI	ACNGT	3 cut(s)	302, 344, 430
TaqI	TCGA	1 cut(s)	204
TasI	AATT	2 cut(s)	48, 127
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	3 cut(s)	320, 323, 503
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	2 cut(s)	278, 415
TseI	GCWGC	5 cut(s)	123, 210, 381, 503, 563
TspDTI	ATGAA	3 cut(s)	20, 32, 465
TspRI	CASTG	2 cut(s)	278, 415
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	549
XbaI	TCTAGA	1 cut(s)	826
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	827, 843
ZrmI	AGTACT	1 cut(s)	861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.