Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Reverse (-)

19780849 .. 19782653

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCTTTGGTTTAGGTACGAGAGCGCAGGGTTCTATGACCAGACCACCCTTCCTGGTAATGTAGGGCTTTGTGGAAATATAACTGCATCACAGGTCACTACATTCACTGCAGCTGCTGGGTCACTGCTAGTAGATCTTCAGCTTGCAACACCTAAAATCAACGGTTTCTTTGCAGCAACTAGGAACAAAGTTGTTAGTAGTGGTGGTAGCGGAAATGTAACCGTCTACGGCGTGGCACAATGTGCCGAGACAGTTAGCAAGATCGGTTGCCAAGATTGCTTGAAAGTGGCATACAATAACCTACAAAGCTGCCTTCCAGATACCGATGGTAGGGCGGTTGACGCAGGTTGTTTCTTGCGGGTAAGAACACCCTTCCATATGTATGTCAATATTACTAGGGTTGTCAAATTTGTTCACCAAATGACATGTCAGTACTCATTCCTTCATCAAACTAACTCGATAATCCTAACAACACATGCAGGAGGTAATTCAAGAAAGAAAGGCATCATCATTGGAGTGGCAGTTGGAGGTGGAGGTCTTCTTCTCATTGTTGGATTTCTTCTCTATTTTAAACTCTCAAGAAAGCCCATGGCGGATCATAGAGGTGACATATTGGGAGCAACCGAGTTGCAAGGACCAGTGAATTATAAATACAAAGATTTGAAGTCAGGAACTCTAAACAATGGTAAAATAGTTGCAGTGAAAAAACTAGCTGTACTTCAATCCGACAGGGCAAAGGCGAATTTCCAAAACGAAGTCACGCTTATAAGCAATGTTCATCACCGCAATCTTATTCGTCTTCTTGGATGTTGTAGCAAAGGACCAGAGTTACTTCTCATATATGAATACATGGCAAACAGCAGCCTCGACAGATTCCTATTTGGTAATTTTAGGCCTTTTAGCCCAGCTAGCTCTAAATTTATGATAAGGAACTGCATAAATGCATGTATAGATATACATAATTCTGTATGGGAAATAGGTCCAAGAAAAGGCTCTCTCAACTGGAAACAAAGAACTGATATAATCATCGGCACAGCTCGGGGTCTCGCCTATTTACATGAGGAGTTCCATGTATGCATCATACATCGAGATATAAAAACCAGCAACATCCTTTTGGATGATAGTTTCCAGCCAAGAATTGCAGATTTTGGGCTGGCAAGGCTTTTACCAGATGATAAGACTCATCTCAGTACCAGATTTGCAGGAACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

405

Amino Acids

44.43

Weight (kDa)

9.37

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	648, 767
Acc36I	ACCTGC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	5 cut(s)	210, 335, 358, 593, 784
AclWI	GGATC	1 cut(s)	603
AcsI	RAATTY	3 cut(s)	407, 742, 917
AcuI	CTGAAG	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	4 cut(s)	17, 434, 717, 1192
AfiI	CCNNNNNNNGG	2 cut(s)	330, 989
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	4 cut(s)	283, 492, 664, 722
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	7 cut(s)	113, 142, 309, 713, 908, 912, 1037
AluI	AGCT	7 cut(s)	113, 142, 309, 713, 908, 912, 1037
Alw26I	GTCTC	2 cut(s)	242, 1049
AlwI	GGATC	1 cut(s)	603
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	1038
AoxI	GGCC	1 cut(s)	893
ApeKI	GCWGC	5 cut(s)	110, 113, 173, 309, 861
ApoI	RAATTY	3 cut(s)	407, 742, 917
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	3 cut(s)	635, 821, 980
AsuHPI	GGTGA	3 cut(s)	407, 617, 773
AsuNHI	GCTAGC	1 cut(s)	908
AvaI	CYCGRG	1 cut(s)	1038
AvaII	GGWCC	3 cut(s)	635, 821, 980
BbsI	GAAGAC	2 cut(s)	530, 791
BbvI	GCAGC	5 cut(s)	100, 122, 185, 296, 873
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	242, 1049
BfaI	CTAG	5 cut(s)	128, 180, 396, 710, 909
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	5 cut(s)	111, 114, 174, 310, 862
BlsI	GCNGC	5 cut(s)	112, 115, 175, 311, 863
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	3 cut(s)	635, 821, 980
BmeT110I	CYCGRG	1 cut(s)	1038
BmgT120I	GGNCC	3 cut(s)	635, 821, 980
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	95, 513, 1086
BmtI	GCTAGC	1 cut(s)	912
BpiI	GAAGAC	2 cut(s)	530, 791
BpuEI	CTTGAG	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	1049
BsaJI	CCNNGG	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 989
Bse1I	ACTGG	2 cut(s)	638, 1007
Bse3DI	GCAATG	1 cut(s)	778
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	588
BseGI	GGATG	3 cut(s)	812, 1107, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	330, 989
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	1 cut(s)	1201
BseNI	ACTGG	2 cut(s)	638, 1007
BseRI	GAGGAG	1 cut(s)	1076
BseXI	GCAGC	5 cut(s)	100, 122, 185, 296, 873
BseYI	CCCAGC	2 cut(s)	116, 904
BshFI	GGCC	1 cut(s)	895
BsiHKCI	CYCGRG	1 cut(s)	1038
BslI	CCNNNNNNNGG	2 cut(s)	330, 989
BsmAI	GTCTC	2 cut(s)	242, 1049
BsnI	GGCC	1 cut(s)	895
Bso31I	GGTCTC	1 cut(s)	1049
BsoBI	CYCGRG	1 cut(s)	1038
Bsp143I	GATC	3 cut(s)	133, 261, 595
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	5 cut(s)	210, 335, 358, 593, 784
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	1 cut(s)	1200
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	335
BspOI	GCTAGC	1 cut(s)	912
BspPI	GGATC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	1049
BsrDI	GCAATG	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	638, 1007
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	3 cut(s)	133, 261, 595
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	3 cut(s)	164, 223, 253
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	144, 910, 1155
BstDEI	CTNAG	1 cut(s)	1187
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	3 cut(s)	812, 1107, 1123
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	136, 264, 598
BstMAI	GTCTC	2 cut(s)	242, 1049
BstMBI	GATC	3 cut(s)	133, 261, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 276, 341, 909, 1159
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	3 cut(s)	429, 479, 948
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	5 cut(s)	100, 122, 185, 296, 873
BstV2I	GAAGAC	2 cut(s)	530, 791
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	812, 1107, 1123
BtsI	GCAGTG	3 cut(s)	105, 122, 705
BtsIMutI	CAGTG	4 cut(s)	105, 122, 645, 705
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	144, 910, 1155
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	635, 821, 980
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	4 cut(s)	16, 433, 716, 1191
CviAII	CATG	7 cut(s)	426, 476, 589, 850, 945, 1058, 1070
CviQI	GTAC	4 cut(s)	16, 433, 716, 1191
DdeI	CTNAG	1 cut(s)	1187
DpnI	GATC	3 cut(s)	135, 263, 597
DpnII	GATC	3 cut(s)	133, 261, 595
DraI	TTTAAA	1 cut(s)	571
DraIII	CACNNNGTG	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	588
Eco147I	AGGCCT	1 cut(s)	895
Eco31I	GGTCTC	1 cut(s)	1049
Eco47I	GGWCC	3 cut(s)	635, 821, 980
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	588
EcoT22I	ATGCAT	2 cut(s)	946, 1079
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	7 cut(s)	429, 479, 592, 853, 948, 1061, 1073
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FatI	CATG	7 cut(s)	425, 475, 588, 849, 944, 1057, 1069
FauI	CCCGC	1 cut(s)	351
FauNDI	CATATG	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	111, 114, 174, 310, 862
FokI	GGATG	3 cut(s)	819, 1094, 1130
Fsp4HI	GCNGC	5 cut(s)	111, 114, 174, 310, 862
FspBI	CTAG	5 cut(s)	128, 180, 396, 710, 909
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	5 cut(s)	111, 114, 174, 310, 862
GsaI	CCCAGC	2 cut(s)	120, 908
HaeIII	GGCC	1 cut(s)	895
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	7 cut(s)	429, 479, 592, 853, 948, 1061, 1073
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	873, 1180
HphI	GGTGA	3 cut(s)	407, 617, 773
Hpy166II	GTNNAC	3 cut(s)	226, 340, 415
Hpy188I	TCNGA	1 cut(s)	727
Hpy188III	TCNNGA	5 cut(s)	317, 492, 579, 669, 1088
Hpy8I	GTNNAC	3 cut(s)	226, 340, 415
HpyAV	CCTTC	4 cut(s)	59, 323, 382, 452
HpyCH4III	ACNGT	3 cut(s)	164, 223, 253
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 276, 341, 909, 1159
HpyF3I	CTNAG	1 cut(s)	1187
Hsp92II	CATG	7 cut(s)	429, 479, 592, 853, 948, 1061, 1073
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	133, 261, 595
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	5 cut(s)	100, 122, 185, 296, 873
LweI	GCATC	3 cut(s)	95, 513, 1086
MaeI	CTAG	5 cut(s)	128, 180, 396, 710, 909
MaeIII	GTNAC	6 cut(s)	94, 120, 217, 605, 757, 828
MalI	GATC	3 cut(s)	135, 263, 597
MboI	GATC	3 cut(s)	133, 261, 595
MboII	GAAGA	5 cut(s)	128, 530, 533, 551, 791
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	8 cut(s)	407, 487, 643, 742, 886, 917, 961, 1137
MlyI	GAGTC	1 cut(s)	1174
MmeI	TCCRAC	3 cut(s)	505, 532, 750
MnlI	CCTC	6 cut(s)	476, 521, 527, 596, 875, 1054
Mph1103I	ATGCAT	2 cut(s)	946, 1079
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	3 cut(s)	381, 515, 603
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	242, 276, 341, 909, 1159
NcoI	CCATGG	1 cut(s)	588
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	3 cut(s)	133, 261, 595
NheI	GCTAGC	1 cut(s)	908
NlaIII	CATG	7 cut(s)	429, 479, 592, 853, 948, 1061, 1073
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	4 cut(s)	94, 120, 605, 757
NsiI	ATGCAT	2 cut(s)	946, 1079
NspI	RCATGY	3 cut(s)	429, 479, 948
PceI	AGGCCT	1 cut(s)	895
PciI	ACATGT	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	873
PkrI	GCNGC	5 cut(s)	112, 115, 175, 311, 863
PleI	GAGTC	1 cut(s)	1174
PpsI	GAGTC	1 cut(s)	1174
PscI	ACATGT	1 cut(s)	425
PsiI	TTATAA	2 cut(s)	648, 767
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	2 cut(s)	116, 904
PspGI	CCWGG	1 cut(s)	52
PspPI	GGNCC	3 cut(s)	635, 821, 980
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	4 cut(s)	17, 434, 717, 1192
RsaNI	GTAC	4 cut(s)	16, 433, 716, 1191
RseI	CAYNNNNRTG	3 cut(s)	381, 515, 603
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	5 cut(s)	111, 114, 174, 310, 862
Sau3AI	GATC	3 cut(s)	133, 261, 595
Sau96I	GGNCC	3 cut(s)	635, 821, 980
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	1174
ScrFI	CCNGG	1 cut(s)	54
SfaNI	GCATC	3 cut(s)	95, 513, 1086
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	3 cut(s)	635, 821, 980
SmiMI	CAYNNNNRTG	3 cut(s)	381, 515, 603
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	8 cut(s)	407, 487, 643, 742, 886, 917, 961, 1137
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	5 cut(s)	210, 335, 358, 593, 784
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	5 cut(s)	128, 180, 396, 710, 909
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	164, 223, 253
TaqI	TCGA	3 cut(s)	458, 867, 1087
TasI	AATT	8 cut(s)	407, 487, 643, 742, 886, 917, 961, 1137
TatI	WGTACW	2 cut(s)	432, 715
TfiI	GAWTC	1 cut(s)	873
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	4 cut(s)	112, 129, 645, 705
TseFI	GTSAC	4 cut(s)	94, 120, 605, 757
TseI	GCWGC	5 cut(s)	110, 113, 173, 309, 861
Tsp45I	GTSAC	4 cut(s)	94, 120, 605, 757
TspDTI	ATGAA	3 cut(s)	434, 767, 858
TspRI	CASTG	4 cut(s)	112, 129, 645, 705
VpaK11BI	GGWCC	3 cut(s)	635, 821, 980
XapI	RAATTY	3 cut(s)	407, 742, 917
XceI	RCATGY	3 cut(s)	429, 479, 948
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	5 cut(s)	128, 180, 396, 710, 909
ZrmI	AGTACT	1 cut(s)	434
Zsp2I	ATGCAT	2 cut(s)	946, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.