Rw3G025250

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
33437846 .. 33451253
13408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025250.1

Sequence Viewer

Length: 1455 bp
ATGGATCTTCAAGTTGCTACGCCCAAGATTAATGGCTTCTTTGCAGCATCTAAGGAGGTAGTTAGCGGTAGTGGAAACACAACAGTCTATGGTGTGGCACAATGTGCTGAGACAACTACCGTAACTGGTTGCCAAGATTGTTTGAAGGTGGCATACACCAATGTACAGAGTTGCCTTCCCGATACAGATGGTAGGGCAGTTGATGCCGGTTGTTTCTTGAGGTACTCTGCTACTTCTTTCTTCCCAGATAACCAGACTACTAATATCAAGCCTTTCTTAGAAAAAGGAGGCAATTCAAGAAAGAAGGCCATCATCATTGGAGTAGTGGTTGGAGGTGTAGGTCTTATTTTACTCATTGTTGGAGTTTTGATCTATTTCAGACTTTCAAGGAAGCCCAAGACGGTTCGTAGAGGAGACATATTGGGAGCAACCGAGTTGCAAGGTCCAGTGAATTATAAGTATAAAGATCTGAAGTCGGCAACAGCAAATTTTAGTGATGCAAATAAGCTAGGAGAAGGAGGATTCGGGGACGTCTACAAGGCAACTCTAAACAATGGGAAAACAGTTGCAGTAAAGAAACTAGCTATACTCCAATCAGACAGGGCAATGACAAGTTTCGAAAATGAAGTCAAGCTTATAAGTAATGTACATCACCGGAATCTAATTCGCCTTCTTGGATGTTGTAGCAAAGGACCAGAATTACTTCTGATATATGAATACATGGCAAACAACAGTCTGGACAAATTCTTATTTGGTGAGAAAAGAGGCTTTCTAAACTGGAAGCAAAGGAATGATATAATCGTTGGTACAGCTAGGGGCCTAGCCTATCTACATGAGGAATTCCATGTATGTATCATACATAGAGATATAAAAACCAGCAACATTCTCTTGGATGATGGTTTTCAGCCAAGAATTGCAGATTTTGGGTTGGCAAGGCTTTTACCTGAGGATCAAACTCATCTTAGTACCCGATTTGCAGGAACATTAGGATACACAGCACCTGAATATGCAATCCATGGTCAATTGTCAGAAAAGGTGGATACCTATAGCTATGGAGTAGTAGTCCTTGAAATTGTAAGCGGCCAAAAGAGCAGTGAAATCAAATCTGATACTATGGGTGAATTTCTCCTAGAAAAGGCCTGGAAACTCTATGAGAACGGCCAGCACTTGGAGTTGGTCGATGAAACATTGGATCCCAACGATTATGAAGCAGAAGATGTGAAAAAGATAGTTGAGATTGCTCTAATGTGCACTCAATCATCACCTGCTCTAAGGCCAACAATGTCTGAAATTGTTGTTTTACTCAAAAGCACAGGCTCTTGGGTAAATAGGCCGCTTACTAGGCCTGTGTTTGTTGATTCTGACCATAAAAGAGTACGGGTGGACACGTCAACTTCTACTGCTTCCTCATCATCCAATGCTACCGCATCCATCTCTCAACTTTCAGGTCGCTAA

Protein Analysis

484

Amino Acids

53.09

Weight (kDa)

7.97

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 12 - 77 4.4e-10 Salt stress response/antifungal
Pkinase PF00069 165 - 432 9.2e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 168 - 433 3e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 638
AarI CACCTGC 1 cut(s) 1273
AatII GACGTC 1 cut(s) 534
Acc36I ACCTGC 1 cut(s) 1273
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccI GTMKAC 1 cut(s) 534
AciI CCGC 4 cut(s) 66, 1080, 1334, 1425
AclWI GGATC 4 cut(s) 12, 957, 1187, 1200
AcoI YGGCCR 2 cut(s) 1081, 1159
AcsI RAATTY 4 cut(s) 487, 743, 839, 1121
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 6 cut(s) 165, 224, 648, 808, 967, 1377
AfiI CCNNNNNNNGG 2 cut(s) 1135, 1168
AflIII ACRYGT 1 cut(s) 1386
AgsI TTSAA 5 cut(s) 11, 145, 297, 387, 1070
AjiI CACGTC 1 cut(s) 1389
AjnI CCWGG 1 cut(s) 1139
AluBI AGCT 5 cut(s) 508, 584, 634, 812, 1050
AluI AGCT 5 cut(s) 508, 584, 634, 812, 1050
Alw21I GWGCWC 1 cut(s) 1253
Alw26I GTCTC 2 cut(s) 104, 408
Alw44I GTGCAC 1 cut(s) 1249
AlwI GGATC 4 cut(s) 12, 957, 1187, 1200
AlwNI CAGNNNCTG 1 cut(s) 1001
AoxI GGCC 8 cut(s) 306, 817, 1081, 1137, 1159, 1274, 1331, 1343
ApaLI GTGCAC 1 cut(s) 1249
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 4 cut(s) 487, 743, 839, 1121
ArsI GACNNNNNNTTYG 2 cut(s) 612, 644
AseI ATTAAT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 702
AspS9I GGNCC 3 cut(s) 443, 692, 817
AsuHPI GGTGA 4 cut(s) 644, 767, 1130, 1254
AsuII TTCGAA 1 cut(s) 618
AvaII GGWCC 2 cut(s) 443, 692
AxyI CCTNAGG 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 1253
BamHI GGATCC 1 cut(s) 1192
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 1 cut(s) 1253
BbvI GCAGC 1 cut(s) 56
BccI CCATC 4 cut(s) 182, 317, 890, 1439
BceAI ACGGC 1 cut(s) 1174
BciT130I CCWGG 1 cut(s) 1141
BciVI GTATCC 2 cut(s) 983, 1033
BcoDI GTCTC 2 cut(s) 104, 408
BfaI CTAG 6 cut(s) 509, 581, 813, 821, 1130, 1341
BfmI CTRYAG 1 cut(s) 1045
BfuAI ACCTGC 1 cut(s) 1273
BfuI GTATCC 2 cut(s) 983, 1033
BglII AGATCT 1 cut(s) 466
BisI GCNGC 3 cut(s) 45, 1081, 1334
BlsI GCNGC 3 cut(s) 46, 1082, 1335
Bme1390I CCNGG 1 cut(s) 1141
Bme18I GGWCC 2 cut(s) 443, 692
BmgBI CACGTC 1 cut(s) 1389
BmgT120I GGNCC 3 cut(s) 443, 692, 817
BmiI GGNNCC 2 cut(s) 818, 1194
BmrFI CCNGG 1 cut(s) 1141
BmsI GCATC 4 cut(s) 56, 193, 487, 1436
Bpu14I TTCGAA 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 1015
BsaWI WCCGGW 1 cut(s) 654
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 1047, 1077
Bsc4I CCNNNNNNNGG 2 cut(s) 1135, 1168
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 130, 446, 782
Bse21I CCTNAGG 1 cut(s) 945
Bse3DI GCAATG 1 cut(s) 612
BseBI CCWGG 1 cut(s) 1141
BseDI CCNNGG 1 cut(s) 1015
BseGI GGATG 4 cut(s) 683, 898, 1412, 1427
BseLI CCNNNNNNNGG 2 cut(s) 1135, 1168
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 99, 936
BseNI ACTGG 3 cut(s) 130, 446, 782
BseRI GAGGAG 1 cut(s) 426
BseSI GKGCMC 1 cut(s) 1253
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 8 cut(s) 308, 819, 1083, 1139, 1161, 1276, 1333, 1345
BsiHKAI GWGCWC 1 cut(s) 1253
BsiSI CCGG 2 cut(s) 207, 655
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 1135, 1168
BsmAI GTCTC 2 cut(s) 104, 408
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 8 cut(s) 308, 819, 1083, 1139, 1161, 1276, 1333, 1345
Bsp119I TTCGAA 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 1253
Bsp1407I TGTACA 2 cut(s) 163, 646
Bsp143I GATC 5 cut(s) 4, 369, 466, 949, 1192
Bsp19I CCATGG 1 cut(s) 1015
BspACI CCGC 4 cut(s) 66, 1080, 1334, 1425
BspANI GGCC 8 cut(s) 308, 819, 1083, 1139, 1161, 1276, 1333, 1345
BspCNI CTCAG 2 cut(s) 100, 937
BspLI GGNNCC 2 cut(s) 818, 1194
BspMI ACCTGC 1 cut(s) 1273
BspPI GGATC 4 cut(s) 12, 957, 1187, 1200
BspT104I TTCGAA 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 1 cut(s) 206
BsrGI TGTACA 2 cut(s) 163, 646
BsrI ACTGG 3 cut(s) 130, 446, 782
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 1015
BssMI GATC 5 cut(s) 4, 369, 466, 949, 1192
BssNI GRCGYC 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 1015
Bst2UI CCWGG 1 cut(s) 1141
Bst4CI ACNGT 5 cut(s) 85, 121, 403, 565, 734
BstACI GRCGYC 1 cut(s) 531
BstAPI GCANNNNNTGC 2 cut(s) 104, 203
BstAUI TGTACA 2 cut(s) 163, 646
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 1163
BstDEI CTNAG 6 cut(s) 51, 108, 277, 945, 962, 1271
BstDSI CCRYGG 1 cut(s) 1015
BstENI CCTNNNNNAGG 1 cut(s) 1133
BstF5I GGATG 4 cut(s) 683, 898, 1412, 1427
BstKTI GATC 5 cut(s) 7, 372, 469, 952, 1195
BstMAI GTCTC 2 cut(s) 104, 408
BstMBI GATC 5 cut(s) 4, 369, 466, 949, 1192
BstMWI GCNNNNNNNGC 4 cut(s) 104, 203, 1089, 1342
BstNI CCWGG 1 cut(s) 1141
BstSCI CCNGG 1 cut(s) 1139
BstSFI CTRYAG 1 cut(s) 1045
BstSLI GKGCMC 1 cut(s) 1253
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 3 cut(s) 4, 466, 1192
BstYI RGATCY 3 cut(s) 4, 466, 1192
Bsu36I CCTNAGG 1 cut(s) 945
BsuI GTATCC 2 cut(s) 983, 1033
BsuRI GGCC 8 cut(s) 308, 819, 1083, 1139, 1161, 1276, 1333, 1345
BtgI CCRYGG 1 cut(s) 1015
BtrI CACGTC 1 cut(s) 1389
BtsCI GGATG 4 cut(s) 683, 898, 1412, 1427
BtsI GCAGTG 1 cut(s) 1099
BtsIMutI CAGTG 2 cut(s) 453, 1099
BveI ACCTGC 1 cut(s) 1273
Cac8I GCNNGC 1 cut(s) 1163
CaiI CAGNNNCTG 1 cut(s) 1001
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 3 cut(s) 443, 692, 817
Csp6I GTAC 6 cut(s) 164, 223, 647, 807, 966, 1376
CviAII CATG 4 cut(s) 721, 833, 845, 1016
CviQI GTAC 6 cut(s) 164, 223, 647, 807, 966, 1376
DdeI CTNAG 6 cut(s) 51, 108, 277, 945, 962, 1271
DpnI GATC 5 cut(s) 6, 371, 468, 951, 1194
DpnII GATC 5 cut(s) 4, 369, 466, 949, 1192
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 1081, 1159
Eco130I CCWWGG 1 cut(s) 1015
Eco147I AGGCCT 2 cut(s) 1139, 1345
Eco47I GGWCC 2 cut(s) 443, 692
Eco57I CTGAAG 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 945
EcoNI CCTNNNNNAGG 1 cut(s) 1133
EcoO109I RGGNCCY 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 1139
EcoT14I CCWWGG 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 1015
FaeI CATG 4 cut(s) 724, 836, 848, 1019
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 618, 650
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 720, 832, 844, 1015
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 45, 1081, 1334
FokI GGATG 4 cut(s) 690, 905, 1399, 1414
Fsp4HI GCNGC 3 cut(s) 45, 1081, 1334
FspBI CTAG 6 cut(s) 509, 581, 813, 821, 1130, 1341
GluI GCNGC 3 cut(s) 45, 1081, 1334
HaeIII GGCC 8 cut(s) 308, 819, 1083, 1139, 1161, 1276, 1333, 1345
HapII CCGG 2 cut(s) 207, 655
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 4 cut(s) 724, 836, 848, 1019
HincII GTYRAC 1 cut(s) 1392
HindII GTYRAC 1 cut(s) 1392
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 3 cut(s) 522, 658, 1358
HpaII CCGG 2 cut(s) 207, 655
HphI GGTGA 4 cut(s) 644, 767, 1130, 1254
Hpy166II GTNNAC 4 cut(s) 535, 1251, 1384, 1392
Hpy188I TCNGA 8 cut(s) 380, 471, 598, 708, 1030, 1108, 1288, 1363
Hpy188III TCNNGA 4 cut(s) 179, 217, 297, 737
Hpy8I GTNNAC 4 cut(s) 535, 1251, 1384, 1392
HpyAV CCTTC 5 cut(s) 139, 185, 298, 509, 680
HpyCH4III ACNGT 5 cut(s) 85, 121, 403, 565, 734
HpyCH4IV ACGT 2 cut(s) 531, 1388
HpyCH4V TGCA 8 cut(s) 44, 439, 500, 569, 917, 977, 1010, 1251
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 203, 1089, 1342
HpyF3I CTNAG 6 cut(s) 51, 108, 277, 945, 962, 1271
HpySE526I ACGT 2 cut(s) 531, 1388
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 4 cut(s) 724, 836, 848, 1019
Kzo9I GATC 5 cut(s) 4, 369, 466, 949, 1192
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 4 cut(s) 56, 193, 487, 1436
MaeI CTAG 6 cut(s) 509, 581, 813, 821, 1130, 1341
MaeII ACGT 2 cut(s) 531, 1388
MaeIII GTNAC 1 cut(s) 121
MalI GATC 5 cut(s) 6, 371, 468, 951, 1194
MboI GATC 5 cut(s) 4, 369, 466, 949, 1192
MboII GAAGA 2 cut(s) 232, 1226
MfeI CAATTG 1 cut(s) 1022
MflI RGATCY 3 cut(s) 4, 466, 1192
MhlI GDGCHC 1 cut(s) 1253
MmeI TCCRAC 2 cut(s) 310, 340
MroXI GAANNNNTTC 1 cut(s) 702
MseI TTAA 1 cut(s) 30
MspI CCGG 2 cut(s) 207, 655
MspR9I CCNGG 1 cut(s) 1141
MunI CAATTG 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 1141
MwoI GCNNNNNNNGC 4 cut(s) 104, 203, 1089, 1342
NcoI CCATGG 1 cut(s) 1015
NdeII GATC 5 cut(s) 4, 369, 466, 949, 1192
NlaIII CATG 4 cut(s) 724, 836, 848, 1019
NlaIV GGNNCC 2 cut(s) 818, 1194
NspV TTCGAA 1 cut(s) 618
PaqCI CACCTGC 1 cut(s) 1273
PceI AGGCCT 2 cut(s) 1139, 1345
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 3 cut(s) 522, 658, 1358
PflMI CCANNNNNTGG 1 cut(s) 1168
PkrI GCNGC 3 cut(s) 46, 1082, 1335
PshBI ATTAAT 1 cut(s) 30
PsiI TTATAA 2 cut(s) 456, 638
Psp6I CCWGG 1 cut(s) 1139
PspGI CCWGG 1 cut(s) 1139
PspN4I GGNNCC 2 cut(s) 818, 1194
PspPI GGNCC 3 cut(s) 443, 692, 817
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 3 cut(s) 4, 466, 1192
RsaI GTAC 6 cut(s) 165, 224, 648, 808, 967, 1377
RsaNI GTAC 6 cut(s) 164, 223, 647, 807, 966, 1376
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 3 cut(s) 45, 1081, 1334
Sau3AI GATC 5 cut(s) 4, 369, 466, 949, 1192
Sau96I GGNCC 3 cut(s) 443, 692, 817
ScrFI CCNGG 1 cut(s) 1141
SduI GDGCHC 1 cut(s) 1253
SfaNI GCATC 4 cut(s) 56, 193, 487, 1436
SfcI CTRYAG 1 cut(s) 1045
SfuI TTCGAA 1 cut(s) 618
SinI GGWCC 2 cut(s) 443, 692
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SseBI AGGCCT 2 cut(s) 1139, 1345
SsiI CCGC 4 cut(s) 66, 1080, 1334, 1425
SspMI CTAG 6 cut(s) 509, 581, 813, 821, 1130, 1341
StuI AGGCCT 2 cut(s) 1139, 1345
StyD4I CCNGG 1 cut(s) 1139
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 5 cut(s) 85, 121, 403, 565, 734
TaiI ACGT 2 cut(s) 534, 1391
TaqI TCGA 2 cut(s) 618, 1179
TatI WGTACW 2 cut(s) 163, 646
TauI GCSGC 2 cut(s) 1083, 1336
TfiI GAWTC 3 cut(s) 522, 658, 1358
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 453, 1099
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 4 cut(s) 639, 729, 1197, 1221
TspRI CASTG 2 cut(s) 453, 1099
Van91I CCANNNNNTGG 1 cut(s) 1168
VneI GTGCAC 1 cut(s) 1249
VpaK11BI GGWCC 2 cut(s) 443, 692
VspI ATTAAT 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 1133
XapI RAATTY 4 cut(s) 487, 743, 839, 1121
XmiI GTMKAC 1 cut(s) 534
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 6 cut(s) 509, 581, 813, 821, 1130, 1341
ZraI GACGTC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.