Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Reverse (-)

35877456 .. 35880221

Gene Structure 2766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1281900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCTTTGGTTTAGGTACGAGAGCGCTGGGTTCTATGACCAGACTACCCTTCCAGGTAATGTAGGGCTTTGTGGAAATATAACTGCGTCACAGGTCACTACATTCACTGCAGCTGCTGGGTCACTGCTAGTTGATCTTCGGATTGCAACACCCAAAATCAACGGTTTCTTTGCAGCAACTAAGAACGAAGTTGTTAGTAGTGGAGGTAATGGAAATGCAACCGTCTACGGTGTGGCACAATGTGCCGAGACAATTAGCAAGATCGGTTGCCAAGATTGCTTGAATGTGGCATACAACAACCTACAGAGCTGCCTTCCAGATACCGATGGTAGGGCAGTTGACGCAGGTTGTTTCATGCGGTACTCTAGTACTTCTTTCTTCTCAGATAACCAGACTACGAACATCGCACACTTCTTAAAAGGCGGTAATTCAAGAAACAAAGGCATAATAATTGGAGTGGCAGTTGGAGGTGGAGGTCTTATTCTTCTTCTCATTGTTGGAATTCTTCTCTATTTTAAACTCTCAAGAAAGTCCGCTGCGGATCATAGAGCTGACATATTGGGAGCAACGGAGTTGCAAGGACCAGTGAATTACAAATATAAAGATATGAAGTCCGCAACAAAAAAATTTAGTCAAGAAAACAAACTAGGAGAAGGAGGTTTCGGAGACATTTACAAGGGAACTCTAAACAATGTGAAAATAGTTGCAGTGAAAAAACTAGTAGTACTTCAATCTGACAGGGCAAAGGCAAATTTCCTAAACGAAGTCAAGCTTATAAGCAATGTTCATCACCGGAATCTTATTCGTCTTCTTGGATGTTGTAGCAAAGGACCAGAATTACTTCTCATATATGAATACATGGCAAACAGCAGCCTAGACAGATTCCTATTTGGCTCTCTCAACTGGAAACAACGAACTGACAGAATCATCGGCACAGCCAGGGGTCTCGCCTATTTACATGAGGAATTTCATGTGTGCATCATACATAGAGATATAAAAACCAGCAACATCCTTTTGGATGATAGTTTCGAGCCAAGAATTTCAGATTTTGGGCTGGCAAGGCTTTTACCAGATGATCAGACTCATCTCAGTACCAGATTTGCAGGAACATTGCGATACACGGCACCAGAATATGCAATTCATGGCCAGTTGTCCGAAAAGGTGGATACCTATAGCTACGGCGTGGTTGTCCTTGAAATCATAAGTGGCCAAAGGAGCAGTGAAGTTAAATCCGATGCTATGGGTGAATTTCTACTTGAAAAGGCATGGAAACTGTATGAGAATGGTTCGCACTTGGAGTTGGTCGATGCAACCCTGGACCCAAATGATCATAAACCAGAAGATGTGAAAAAAAATCATACAGATTGCTCTGATGTGCACTCAATCATAAGCTGCTCTGAGGCCAACAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

472

Amino Acids

51.64

Weight (kDa)

6.89

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	24 - 123	4.3e-12	Salt stress response/antifungal
Pkinase	PF00069	210 - 408	8.4e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	212 - 407	2.5e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
Acc36I	ACCTGC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	1123
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	5 cut(s)	358, 423, 534, 539, 615
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	1144, 1207
AcsI	RAATTY	6 cut(s)	501, 626, 751, 965, 1038, 1247
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	5 cut(s)	17, 362, 370, 726, 1093
AfeI	AGCGCT	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	5 cut(s)	283, 432, 731, 1196, 1259
AhlI	ACTAGT	1 cut(s)	718
AjnI	CCWGG	3 cut(s)	52, 938, 1314
AluBI	AGCT	6 cut(s)	113, 309, 551, 772, 1176, 1392
AluI	AGCT	6 cut(s)	113, 309, 551, 772, 1176, 1392
Alw21I	GWGCWC	1 cut(s)	1380
Alw26I	GTCTC	3 cut(s)	242, 660, 950
Alw44I	GTGCAC	1 cut(s)	1376
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	3 cut(s)	1144, 1207, 1401
ApaLI	GTGCAC	1 cut(s)	1376
ApeKI	GCWGC	7 cut(s)	110, 113, 173, 309, 536, 870, 1392
ApoI	RAATTY	6 cut(s)	501, 626, 751, 965, 1038, 1247
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	3 cut(s)	581, 830, 1318
AsuHPI	GGTGA	2 cut(s)	782, 1256
AvaII	GGWCC	3 cut(s)	581, 830, 1318
BaeGI	GKGCMC	1 cut(s)	1380
BaeI	ACNNNNGTAYC	2 cut(s)	352, 385
BalI	TGGCCA	2 cut(s)	1146, 1209
BanI	GGYRCC	1 cut(s)	1123
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	1 cut(s)	1380
BbvI	GCAGC	7 cut(s)	100, 122, 185, 296, 523, 882, 1379
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	2 cut(s)	1137, 1195
BciT130I	CCWGG	3 cut(s)	54, 940, 1316
BciVI	GTATCC	1 cut(s)	1159
BclI	TGATCA	2 cut(s)	1075, 1327
BcoDI	GTCTC	3 cut(s)	242, 660, 950
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	5 cut(s)	128, 366, 647, 719, 875
BfmI	CTRYAG	3 cut(s)	108, 302, 1171
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	1159
BisI	GCNGC	7 cut(s)	111, 114, 174, 310, 537, 871, 1393
BlsI	GCNGC	7 cut(s)	112, 115, 175, 311, 538, 872, 1394
BmcAI	AGTACT	2 cut(s)	370, 726
Bme1390I	CCNGG	3 cut(s)	54, 940, 1316
Bme18I	GGWCC	3 cut(s)	581, 830, 1318
BmgT120I	GGNCC	3 cut(s)	581, 830, 1318
BmiI	GGNNCC	2 cut(s)	1125, 1320
BmrFI	CCNGG	3 cut(s)	54, 940, 1316
BmsI	GCATC	3 cut(s)	987, 1225, 1297
BpiI	GAAGAC	1 cut(s)	800
BpuEI	CTTGAG	1 cut(s)	508
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	2 cut(s)	939, 1314
BsaWI	WCCGGW	1 cut(s)	792
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	3 cut(s)	584, 908, 1147
Bse3DI	GCAATG	2 cut(s)	787, 1109
BseBI	CCWGG	3 cut(s)	54, 940, 1316
BseDI	CCNNGG	2 cut(s)	939, 1314
BseGI	GGATG	3 cut(s)	821, 1008, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	2 cut(s)	787, 1109
BseMII	CTCAG	3 cut(s)	396, 1102, 1389
BseNI	ACTGG	3 cut(s)	584, 908, 1147
BseSI	GKGCMC	1 cut(s)	1380
BseXI	GCAGC	7 cut(s)	100, 122, 185, 296, 523, 882, 1379
BseYI	CCCAGC	2 cut(s)	26, 116
BshFI	GGCC	3 cut(s)	1146, 1209, 1403
BshNI	GGYRCC	1 cut(s)	1123
BsiHKAI	GWGCWC	1 cut(s)	1380
BsiSI	CCGG	1 cut(s)	793
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	3 cut(s)	242, 660, 950
BsnI	GGCC	3 cut(s)	1146, 1209, 1403
Bso31I	GGTCTC	1 cut(s)	950
Bsp1286I	GDGCHC	1 cut(s)	1380
Bsp143I	GATC	5 cut(s)	133, 261, 541, 1075, 1327
BspACI	CCGC	5 cut(s)	358, 423, 534, 539, 615
BspANI	GGCC	3 cut(s)	1146, 1209, 1403
BspCNI	CTCAG	3 cut(s)	395, 1101, 1390
BspLI	GGNNCC	2 cut(s)	1125, 1320
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	1123
BspTNI	GGTCTC	1 cut(s)	950
BsrDI	GCAATG	2 cut(s)	787, 1109
BsrI	ACTGG	3 cut(s)	584, 908, 1147
BssECI	CCNNGG	2 cut(s)	939, 1314
BssMI	GATC	5 cut(s)	133, 261, 541, 1075, 1327
Bst2UI	CCWGG	3 cut(s)	54, 940, 1316
Bst4CI	ACNGT	4 cut(s)	164, 223, 230, 1275
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	4 cut(s)	180, 382, 1088, 1398
BstF5I	GGATG	3 cut(s)	821, 1008, 1024
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	5 cut(s)	136, 264, 544, 1078, 1330
BstMAI	GTCTC	3 cut(s)	242, 660, 950
BstMBI	GATC	5 cut(s)	133, 261, 541, 1075, 1327
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 276, 341, 1060, 1215
BstNI	CCWGG	3 cut(s)	54, 940, 1316
BstSCI	CCNGG	3 cut(s)	52, 938, 1314
BstSFI	CTRYAG	3 cut(s)	108, 302, 1171
BstSLI	GKGCMC	1 cut(s)	1380
BstV1I	GCAGC	7 cut(s)	100, 122, 185, 296, 523, 882, 1379
BstV2I	GAAGAC	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	1159
BsuRI	GGCC	3 cut(s)	1146, 1209, 1403
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	821, 1008, 1024
BtsI	GCAGTG	4 cut(s)	105, 122, 714, 1225
BtsIMutI	CAGTG	5 cut(s)	105, 122, 591, 714, 1225
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	1056
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	581, 830, 1318
CseI	GACGC	2 cut(s)	75, 350
Csp6I	GTAC	5 cut(s)	16, 361, 369, 725, 1092
CviAII	CATG	6 cut(s)	355, 859, 959, 971, 1142, 1266
CviQI	GTAC	5 cut(s)	16, 361, 369, 725, 1092
DdeI	CTNAG	4 cut(s)	180, 382, 1088, 1398
DpnI	GATC	5 cut(s)	135, 263, 543, 1077, 1329
DpnII	GATC	5 cut(s)	133, 261, 541, 1075, 1327
DraI	TTTAAA	1 cut(s)	517
DraIII	CACNNNGTG	1 cut(s)	242
EaeI	YGGCCR	2 cut(s)	1144, 1207
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	3 cut(s)	581, 830, 1318
Eco47III	AGCGCT	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	501
EcoRII	CCWGG	3 cut(s)	52, 938, 1314
FaeI	CATG	6 cut(s)	358, 862, 962, 974, 1145, 1269
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FatI	CATG	6 cut(s)	354, 858, 958, 970, 1141, 1265
FbaI	TGATCA	2 cut(s)	1075, 1327
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	7 cut(s)	111, 114, 174, 310, 537, 871, 1393
FokI	GGATG	3 cut(s)	828, 995, 1031
Fsp4HI	GCNGC	7 cut(s)	111, 114, 174, 310, 537, 871, 1393
FspBI	CTAG	5 cut(s)	128, 366, 647, 719, 875
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	7 cut(s)	111, 114, 174, 310, 537, 871, 1393
GsaI	CCCAGC	2 cut(s)	30, 120
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	1146, 1209, 1403
HapII	CCGG	1 cut(s)	793
HgaI	GACGC	2 cut(s)	75, 350
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	6 cut(s)	358, 862, 962, 974, 1145, 1269
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	4 cut(s)	796, 882, 924, 1081
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	2 cut(s)	782, 1256
Hpy166II	GTNNAC	3 cut(s)	226, 340, 1378
Hpy188III	TCNNGA	4 cut(s)	317, 432, 525, 635
Hpy8I	GTNNAC	3 cut(s)	226, 340, 1378
HpyAV	CCTTC	3 cut(s)	59, 323, 647
HpyCH4III	ACNGT	4 cut(s)	164, 223, 230, 1275
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 276, 341, 1060, 1215
HpyF3I	CTNAG	4 cut(s)	180, 382, 1088, 1398
Hsp92II	CATG	6 cut(s)	358, 862, 962, 974, 1145, 1269
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	2 cut(s)	1075, 1327
Kzo9I	GATC	5 cut(s)	133, 261, 541, 1075, 1327
LmnI	GCTCC	2 cut(s)	563, 1215
Lsp1109I	GCAGC	7 cut(s)	100, 122, 185, 296, 523, 882, 1379
LweI	GCATC	3 cut(s)	987, 1225, 1297
MaeI	CTAG	5 cut(s)	128, 366, 647, 719, 875
MaeIII	GTNAC	3 cut(s)	87, 94, 120
MalI	GATC	5 cut(s)	135, 263, 543, 1077, 1329
MboI	GATC	5 cut(s)	133, 261, 541, 1075, 1327
MboII	GAAGA	7 cut(s)	128, 370, 476, 479, 497, 800, 1352
MhlI	GDGCHC	1 cut(s)	1380
MlsI	TGGCCA	2 cut(s)	1146, 1209
MluNI	TGGCCA	2 cut(s)	1146, 1209
MlyI	GAGTC	1 cut(s)	1075
MmeI	TCCRAC	2 cut(s)	445, 478
MnlI	CCTC	6 cut(s)	197, 461, 467, 650, 955, 1393
Mox20I	TGGCCA	2 cut(s)	1146, 1209
MroXI	GAANNNNTTC	1 cut(s)	840
MscI	TGGCCA	2 cut(s)	1146, 1209
MseI	TTAA	3 cut(s)	416, 516, 1227
Msp20I	TGGCCA	2 cut(s)	1146, 1209
MspA1I	CMGCKG	2 cut(s)	113, 536
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	3 cut(s)	54, 940, 1316
MvaI	CCWGG	3 cut(s)	54, 940, 1316
MwoI	GCNNNNNNNGC	5 cut(s)	242, 276, 341, 1060, 1215
NdeII	GATC	5 cut(s)	133, 261, 541, 1075, 1327
NlaIII	CATG	6 cut(s)	358, 862, 962, 974, 1145, 1269
NlaIV	GGNNCC	2 cut(s)	1125, 1320
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	3 cut(s)	87, 94, 120
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	3 cut(s)	796, 882, 924
PkrI	GCNGC	7 cut(s)	112, 115, 175, 311, 538, 872, 1394
PleI	GAGTC	1 cut(s)	1075
PpsI	GAGTC	1 cut(s)	1075
PsiI	TTATAA	1 cut(s)	776
Psp6I	CCWGG	3 cut(s)	52, 938, 1314
PspFI	CCCAGC	2 cut(s)	26, 116
PspGI	CCWGG	3 cut(s)	52, 938, 1314
PspN4I	GGNNCC	2 cut(s)	1125, 1320
PspPI	GGNCC	3 cut(s)	581, 830, 1318
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	5 cut(s)	17, 362, 370, 726, 1093
RsaNI	GTAC	5 cut(s)	16, 361, 369, 725, 1092
SaqAI	TTAA	3 cut(s)	416, 516, 1227
SatI	GCNGC	7 cut(s)	111, 114, 174, 310, 537, 871, 1393
Sau3AI	GATC	5 cut(s)	133, 261, 541, 1075, 1327
Sau96I	GGNCC	3 cut(s)	581, 830, 1318
ScaI	AGTACT	2 cut(s)	370, 726
SchI	GAGTC	1 cut(s)	1075
ScrFI	CCNGG	3 cut(s)	54, 940, 1316
SduI	GDGCHC	1 cut(s)	1380
SfaNI	GCATC	3 cut(s)	987, 1225, 1297
SfcI	CTRYAG	3 cut(s)	108, 302, 1171
SinI	GGWCC	3 cut(s)	581, 830, 1318
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
SpeI	ACTAGT	1 cut(s)	718
SsiI	CCGC	5 cut(s)	358, 423, 534, 539, 615
SspMI	CTAG	5 cut(s)	128, 366, 647, 719, 875
StyD4I	CCNGG	3 cut(s)	52, 938, 1314
TaaI	ACNGT	4 cut(s)	164, 223, 230, 1275
TaqI	TCGA	2 cut(s)	1029, 1305
TatI	WGTACW	2 cut(s)	368, 724
TfiI	GAWTC	3 cut(s)	796, 882, 924
Tru1I	TTAA	3 cut(s)	416, 516, 1227
Tru9I	TTAA	3 cut(s)	416, 516, 1227
TscAI	CASTG	5 cut(s)	112, 129, 591, 714, 1225
TseFI	GTSAC	3 cut(s)	87, 94, 120
TseI	GCWGC	7 cut(s)	110, 113, 173, 309, 536, 870, 1392
Tsp45I	GTSAC	3 cut(s)	87, 94, 120
TspDTI	ATGAA	6 cut(s)	343, 623, 776, 867, 959, 1130
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	5 cut(s)	112, 129, 591, 714, 1225
VneI	GTGCAC	1 cut(s)	1376
VpaK11BI	GGWCC	3 cut(s)	581, 830, 1318
XapI	RAATTY	6 cut(s)	501, 626, 751, 965, 1038, 1247
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	5 cut(s)	128, 366, 647, 719, 875
ZrmI	AGTACT	2 cut(s)	370, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.