Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Forward (+)

35289801 .. 35291420

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45230

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAATATATCCAAAAAATTCACATTGCCTTCTTTTCTAGGAGACATATTGGGAGCAACCGAGTTGCAAGGTCCAGTGAATTATAAGTATAAAGATCTGAAGTCGGCAACAGCAAATTTTAGTGATGCAAATAAGCTAGGAGAAGGAGGATTCGGGGACGTCTACAAGGCAACTCTAAACAATGGGAAAACAGTTGCAGTAAAGAAACTAGCTATACTCCAATCAGACCGGGCAATGACAAGTTTTGAAAATGAAGTCAAGCTTATAAGTAATGTACATCACCGGAATCTAATTCGCCTTCTTGGATGTTGTAGCAAGGGACCAGAATTACTTCTGATATATGAATACATGGCAAATAACAGTCTGGACAAATTCTTATTTGGTGAGAAAAGAGGCTTTCTAAACTGGAAGCAAAGGAATGATATAATCTTCGGTACAGCTAGGGGTCTAGCCTATCTACATGAGGAATTCCATGTATGTATCATACATAGAGATATAAAAACCAGCAACATTCTCTTGGATGATGGTTTTCAGCCAAGAATTGCAGATTTTGGGTTGGCAAGGCTTTTACCTGAGGATCAAACTCATCTTAGTACCCGATTTGCAGGAACATTAGGATACACAGCACCTGAATATGCACTCCATGGTCAATTGTCAGAAAAGGTGGATACCTATAGCTATGGAGTAGTAGTCCTTGAAATTGTAAGCGGCCAAAAGAGCTGTGAAATCAAATCTGATACTACGGGTGAATTTCTCCTCGAAAAGGCCTGGAAACTCTATGAGAACGGCCAGCACTTGGAGTTGGTCGATGAAACATTGGATCCCAACGATTATGAAGCAGAAGATGTGAAAAAGATGGTTGAGATTGCTCTAATGTGCACTCAATCATCACCTGCTTTAAGGCCAACAATGACTGAAATTGTTGTTTTACTCAAAAGCACAGGCTCTTGGGTAAATAGGCCGCTTACTAGGCCTGTGTTTGTTGATTCTGACCATAAAAGAGTACGGGTGGACACGTCAACTTCTACTGGTTCCTCATCATCCAATGCTACCGCATCCATCTCTCAATTTTCAGGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

360

Amino Acids

40.08

Weight (kDa)

6.33

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 308	8.9e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	44 - 309	2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	84, 266
AarI	CACCTGC	1 cut(s)	901
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	901
AccB7I	CCANNNNNTGG	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	3 cut(s)	708, 962, 1053
AclWI	GGATC	3 cut(s)	585, 815, 828
AcoI	YGGCCR	2 cut(s)	709, 787
AcsI	RAATTY	5 cut(s)	17, 115, 371, 467, 749
AcuI	CTGAAG	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	4 cut(s)	276, 436, 595, 1005
AfiI	CCNNNNNNNGG	2 cut(s)	763, 796
AflIII	ACRYGT	1 cut(s)	1014
AgsI	TTSAA	2 cut(s)	248, 698
AjiI	CACGTC	1 cut(s)	1017
AjnI	CCWGG	1 cut(s)	767
AluBI	AGCT	6 cut(s)	136, 212, 262, 440, 678, 720
AluI	AGCT	6 cut(s)	136, 212, 262, 440, 678, 720
Alw21I	GWGCWC	1 cut(s)	881
Alw26I	GTCTC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	3 cut(s)	585, 815, 828
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	6 cut(s)	709, 765, 787, 902, 959, 971
ApaLI	GTGCAC	1 cut(s)	877
ApoI	RAATTY	5 cut(s)	17, 115, 371, 467, 749
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	71, 320
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	4 cut(s)	272, 395, 758, 882
AvaII	GGWCC	2 cut(s)	71, 320
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	881
BamHI	GGATCC	1 cut(s)	820
Bbv12I	GWGCWC	1 cut(s)	881
BccI	CCATC	3 cut(s)	518, 850, 1067
BceAI	ACGGC	1 cut(s)	802
BciT130I	CCWGG	1 cut(s)	769
BciVI	GTATCC	2 cut(s)	611, 661
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	6 cut(s)	38, 137, 209, 441, 449, 969
BfmI	CTRYAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	901
BfuI	GTATCC	2 cut(s)	611, 661
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	709, 962
BlsI	GCNGC	2 cut(s)	710, 963
Bme1390I	CCNGG	2 cut(s)	230, 769
Bme18I	GGWCC	2 cut(s)	71, 320
BmgBI	CACGTC	1 cut(s)	1017
BmgT120I	GGNCC	2 cut(s)	71, 320
BmiI	GGNNCC	3 cut(s)	321, 822, 1033
BmrFI	CCNGG	2 cut(s)	230, 769
BmsI	GCATC	2 cut(s)	115, 1064
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 796
Bse1I	ACTGG	3 cut(s)	74, 410, 1033
Bse21I	CCTNAGG	1 cut(s)	573
Bse3DI	GCAATG	2 cut(s)	23, 240
BseBI	CCWGG	1 cut(s)	769
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	4 cut(s)	311, 526, 1040, 1055
BseLI	CCNNNNNNNGG	2 cut(s)	763, 796
BseMI	GCAATG	2 cut(s)	23, 240
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	3 cut(s)	74, 410, 1033
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	881
BshFI	GGCC	6 cut(s)	711, 767, 789, 904, 961, 973
BsiHKAI	GWGCWC	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	229, 283
BslFI	GGGAC	2 cut(s)	170, 333
BslI	CCNNNNNNNGG	2 cut(s)	763, 796
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	170, 333
BsnI	GGCC	6 cut(s)	711, 767, 789, 904, 961, 973
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	94, 577, 820
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	3 cut(s)	708, 962, 1053
BspANI	GGCC	6 cut(s)	711, 767, 789, 904, 961, 973
BspCNI	CTCAG	1 cut(s)	565
BspLI	GGNNCC	3 cut(s)	321, 822, 1033
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	3 cut(s)	585, 815, 828
BsrDI	GCAATG	2 cut(s)	23, 240
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	3 cut(s)	74, 410, 1033
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	3 cut(s)	94, 577, 820
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	769
Bst4CI	ACNGT	2 cut(s)	193, 362
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	2 cut(s)	573, 590
BstDSI	CCRYGG	1 cut(s)	643
BstENI	CCTNNNNNAGG	1 cut(s)	761
BstF5I	GGATG	4 cut(s)	311, 526, 1040, 1055
BstKTI	GATC	3 cut(s)	97, 580, 823
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	3 cut(s)	94, 577, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	717, 970
BstNI	CCWGG	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	228, 767
BstSFI	CTRYAG	1 cut(s)	673
BstSLI	GKGCMC	1 cut(s)	881
BstX2I	RGATCY	2 cut(s)	94, 820
BstYI	RGATCY	2 cut(s)	94, 820
Bsu36I	CCTNAGG	1 cut(s)	573
BsuI	GTATCC	2 cut(s)	611, 661
BsuRI	GGCC	6 cut(s)	711, 767, 789, 904, 961, 973
BtgI	CCRYGG	1 cut(s)	643
BtrI	CACGTC	1 cut(s)	1017
BtsCI	GGATG	4 cut(s)	311, 526, 1040, 1055
BtsIMutI	CAGTG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	1 cut(s)	791
CaiI	CAGNNNCTG	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	71, 320
Csp6I	GTAC	4 cut(s)	275, 435, 594, 1004
CviAII	CATG	4 cut(s)	349, 461, 473, 644
CviQI	GTAC	4 cut(s)	275, 435, 594, 1004
DdeI	CTNAG	2 cut(s)	573, 590
DpnI	GATC	3 cut(s)	96, 579, 822
DpnII	GATC	3 cut(s)	94, 577, 820
EaeI	YGGCCR	2 cut(s)	709, 787
Eco130I	CCWWGG	1 cut(s)	643
Eco147I	AGGCCT	2 cut(s)	767, 973
Eco47I	GGWCC	2 cut(s)	71, 320
Eco57I	CTGAAG	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	4 cut(s)	352, 464, 476, 647
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	170, 333
FatI	CATG	4 cut(s)	348, 460, 472, 643
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	709, 962
FokI	GGATG	4 cut(s)	318, 533, 1027, 1042
Fsp4HI	GCNGC	2 cut(s)	709, 962
FspBI	CTAG	6 cut(s)	38, 137, 209, 441, 449, 969
GluI	GCNGC	2 cut(s)	709, 962
HaeIII	GGCC	6 cut(s)	711, 767, 789, 904, 961, 973
HapII	CCGG	2 cut(s)	229, 283
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	352, 464, 476, 647
HincII	GTYRAC	1 cut(s)	1020
HindII	GTYRAC	1 cut(s)	1020
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	150, 286, 986
HpaII	CCGG	2 cut(s)	229, 283
HphI	GGTGA	4 cut(s)	272, 395, 758, 882
Hpy166II	GTNNAC	4 cut(s)	163, 879, 1012, 1020
Hpy188I	TCNGA	6 cut(s)	99, 226, 336, 658, 736, 991
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	4 cut(s)	163, 879, 1012, 1020
HpyAV	CCTTC	3 cut(s)	39, 137, 308
HpyCH4III	ACNGT	2 cut(s)	193, 362
HpyCH4IV	ACGT	2 cut(s)	159, 1016
HpyCH4V	TGCA	7 cut(s)	67, 128, 197, 545, 605, 638, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	717, 970
HpyF3I	CTNAG	2 cut(s)	573, 590
HpySE526I	ACGT	2 cut(s)	159, 1016
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	352, 464, 476, 647
Kzo9I	GATC	3 cut(s)	94, 577, 820
LmnI	GCTCC	1 cut(s)	53
LweI	GCATC	2 cut(s)	115, 1064
MaeI	CTAG	6 cut(s)	38, 137, 209, 441, 449, 969
MaeII	ACGT	2 cut(s)	159, 1016
MalI	GATC	3 cut(s)	96, 579, 822
MboI	GATC	3 cut(s)	94, 577, 820
MboII	GAAGA	2 cut(s)	421, 854
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	2 cut(s)	94, 820
MhlI	GDGCHC	1 cut(s)	881
MnlI	CCTC	6 cut(s)	140, 386, 457, 568, 767, 1045
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	899
MspI	CCGG	2 cut(s)	229, 283
MspR9I	CCNGG	2 cut(s)	230, 769
MunI	CAATTG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	769
MwoI	GCNNNNNNNGC	2 cut(s)	717, 970
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	3 cut(s)	94, 577, 820
NlaIII	CATG	4 cut(s)	352, 464, 476, 647
NlaIV	GGNNCC	3 cut(s)	321, 822, 1033
PaqCI	CACCTGC	1 cut(s)	901
PceI	AGGCCT	2 cut(s)	767, 973
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	150, 286, 986
PflMI	CCANNNNNTGG	1 cut(s)	796
PkrI	GCNGC	2 cut(s)	710, 963
PsiI	TTATAA	2 cut(s)	84, 266
Psp6I	CCWGG	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	767
PspN4I	GGNNCC	3 cut(s)	321, 822, 1033
PspPI	GGNCC	2 cut(s)	71, 320
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	2 cut(s)	94, 820
RsaI	GTAC	4 cut(s)	276, 436, 595, 1005
RsaNI	GTAC	4 cut(s)	275, 435, 594, 1004
SaqAI	TTAA	1 cut(s)	899
SatI	GCNGC	2 cut(s)	709, 962
Sau3AI	GATC	3 cut(s)	94, 577, 820
Sau96I	GGNCC	2 cut(s)	71, 320
ScrFI	CCNGG	2 cut(s)	230, 769
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	2 cut(s)	115, 1064
SfcI	CTRYAG	1 cut(s)	673
SinI	GGWCC	2 cut(s)	71, 320
SseBI	AGGCCT	2 cut(s)	767, 973
SsiI	CCGC	3 cut(s)	708, 962, 1053
SspMI	CTAG	6 cut(s)	38, 137, 209, 441, 449, 969
StuI	AGGCCT	2 cut(s)	767, 973
StyD4I	CCNGG	2 cut(s)	228, 767
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	193, 362
TaiI	ACGT	2 cut(s)	162, 1019
TaqI	TCGA	2 cut(s)	759, 807
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	2 cut(s)	711, 964
TfiI	GAWTC	3 cut(s)	150, 286, 986
Tru1I	TTAA	1 cut(s)	899
Tru9I	TTAA	1 cut(s)	899
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	5 cut(s)	17, 267, 357, 825, 849
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	796
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	71, 320
XagI	CCTNNNNNAGG	1 cut(s)	761
XapI	RAATTY	5 cut(s)	17, 115, 371, 467, 749
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	6 cut(s)	38, 137, 209, 441, 449, 969
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.