Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005518

Physical Location & Seq

Genomic Coordinates Reverse (-)

19278774 .. 19280656

Gene Structure 1883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27613.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAAATTAAGAATCATGATTCCAATAAGAAGAAGAAAGGGGGATGGGAATTGTTGATACACAATAGCAGCATAACTATCTTGTCTACATTCCTTAGAATCCCAGTAACCATGAAGGTCATGACGAATAAGATGATATTGGCTATAATTGCAGTGAGCCACGTATGGTGGTTGGCTAGTTGTGTTGGTGCAGACCCGCAGATCAATCTTTTGAACAAGGGTTGCAGCCAGTACAATGCAACAAGCTTGTCAGACTTCTATACCAATCTCAACGCCACTTTCTTGGACCTCAAAGCGCAACTACTGAACGGCAGCAAGCACTTTGCAACGGCACAACAGGCCAAGGGCTCCGACCCCGTCTACGCCATGACGCAGTGTAGGAACTACCTCTCCTCTGCAGACTGTCTATCTTGCTTTGCTGCCGCCGTCTCCCAAATCCGCAACTGCTCTGCCTCCAATGGCGCTCGCGTTGTCTACGACGGATGCTTTCTCCGGTACGTACCACATTACTCTGTGTTATTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

176

Amino Acids

19.38

Weight (kDa)

9.32

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	75 - 166	5.9e-18	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27612 FvH4_1g27613 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620 FvH4_2g29620
malus_domestica	MD09G1281900.v1.1
prunus_persica	Prupe.3G012100_v2.0.a1
pyrus_communis	pycom09g18970 pycom09g18990
rosa_chinensis	RchiOBHm_Chr3g0487811 RchiOBHm_Chr3g0487871 RchiOBHm_Chr3g0487881
rosa_laevigata	RLG00000022971 RLG00000028062
rosa_multiflora	Rmu_sc0004448.1_g000005 Rmu_sc0008363.1_g000023
rosa_roxburghii	Rroxscaffold_3G00220850 Rroxscaffold_3G00252340 Rroxscaffold_5G00352940 Rroxscaffold_6G00394450 Rroxscaffold_6G00394460
rosa_rugosa	Rorug03G0236900 Rorug03G0237000
rosa_samantha	Rh3AG284800 Rh3BG321600 Rh3CG320300 Rh3DG318800
rosa_wichuraiana	Rw3G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	86, 360, 474
AccII	CGCG	1 cut(s)	468
AciI	CCGC	3 cut(s)	197, 423, 439
AfaI	GTAC	3 cut(s)	233, 497, 501
AgsI	TTSAA	1 cut(s)	214
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	1 cut(s)	246
AluI	AGCT	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	433
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	4 cut(s)	69, 225, 312, 419
AspLEI	GCGC	2 cut(s)	298, 464
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	81, 237, 324, 406
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	3 cut(s)	325, 345, 410
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	465
BisI	GCNGC	5 cut(s)	70, 226, 313, 420, 423
BlsI	GCNGC	5 cut(s)	71, 227, 314, 421, 424
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	349
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	473
BmuI	ACTGGG	1 cut(s)	98
BsaAI	YACGTR	2 cut(s)	163, 499
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	2 cut(s)	104, 229
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	50, 488
BseNI	ACTGG	2 cut(s)	104, 229
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	4 cut(s)	81, 237, 324, 406
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	433
BsmBI	CGTCTC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	197, 423, 439
BspANI	GGCC	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	468
BspHI	TCATGA	2 cut(s)	16, 120
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	104, 229
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	404
BstBAI	YACGTR	2 cut(s)	163, 499
BstC8I	GCNNGC	2 cut(s)	317, 466
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	50, 488
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	298, 464
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 338
BstSFI	CTRYAG	1 cut(s)	396
BstSNI	TACGTA	1 cut(s)	499
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	81, 237, 324, 406
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	50, 488
BtsI	GCAGTG	2 cut(s)	159, 380
BtsIMutI	CAGTG	2 cut(s)	159, 380
Cac8I	GCNNGC	2 cut(s)	317, 466
CciI	TCATGA	2 cut(s)	16, 120
CfoI	GCGC	2 cut(s)	298, 464
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	232, 496, 500
CviAII	CATG	4 cut(s)	17, 112, 121, 367
CviJI	RGCY	7 cut(s)	143, 159, 176, 228, 246, 341, 348
CviKI_1	RGCY	7 cut(s)	143, 159, 176, 228, 246, 341, 348
CviQI	GTAC	3 cut(s)	232, 496, 500
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco105I	TACGTA	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	4 cut(s)	20, 115, 124, 370
FaiI	YATR	8 cut(s)	18, 74, 113, 122, 146, 166, 261, 368
FatI	CATG	4 cut(s)	16, 111, 120, 366
FauI	CCCGC	1 cut(s)	204
FblI	GTMKAC	3 cut(s)	86, 360, 474
Fnu4HI	GCNGC	5 cut(s)	70, 226, 313, 420, 423
FokI	GGATG	2 cut(s)	57, 495
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	70, 226, 313, 420, 423
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	2 cut(s)	297, 463
GluI	GCNGC	5 cut(s)	70, 226, 313, 420, 423
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	493
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	298, 464
Hin1II	CATG	4 cut(s)	20, 115, 124, 370
Hin6I	GCGC	2 cut(s)	296, 462
HinP1I	GCGC	2 cut(s)	296, 462
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	3 cut(s)	13, 20, 99
HpaII	CCGG	1 cut(s)	493
Hpy166II	GTNNAC	3 cut(s)	87, 361, 475
Hpy188I	TCNGA	2 cut(s)	253, 352
Hpy188III	TCNNGA	2 cut(s)	17, 121
Hpy8I	GTNNAC	3 cut(s)	87, 361, 475
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	2 cut(s)	162, 498
HpyCH4V	TGCA	6 cut(s)	152, 191, 225, 239, 326, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 338
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	2 cut(s)	162, 498
Hsp92II	CATG	4 cut(s)	20, 115, 124, 370
HspAI	GCGC	2 cut(s)	296, 462
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	4 cut(s)	117, 242, 323, 506
Lsp1109I	GCAGC	4 cut(s)	81, 237, 324, 406
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	162, 498
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	3 cut(s)	43, 46, 514
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	3 cut(s)	6, 50, 147
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	4 cut(s)	299, 398, 403, 463
MseI	TTAA	1 cut(s)	9
MspI	CCGG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	149, 338
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	4 cut(s)	20, 115, 124, 370
NlaIV	GGNNCC	1 cut(s)	349
PagI	TCATGA	2 cut(s)	16, 120
PfeI	GAWTC	3 cut(s)	13, 20, 99
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	5 cut(s)	71, 227, 314, 421, 424
Ppu21I	YACGTR	2 cut(s)	163, 499
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	400
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	3 cut(s)	233, 497, 501
RsaNI	GTAC	3 cut(s)	232, 496, 500
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	5 cut(s)	70, 226, 313, 420, 423
Sau3AI	GATC	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	6 cut(s)	120, 165, 248, 291, 390, 501
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	286
SnaBI	TACGTA	1 cut(s)	499
Sse9I	AATT	3 cut(s)	6, 50, 147
SsiI	CCGC	3 cut(s)	197, 423, 439
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	2 cut(s)	165, 501
TasI	AATT	3 cut(s)	6, 50, 147
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	13, 20, 99
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	159, 380
TseI	GCWGC	4 cut(s)	69, 225, 312, 419
TspDTI	ATGAA	2 cut(s)	17, 128
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	2 cut(s)	159, 380
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	286
XmiI	GTMKAC	3 cut(s)	86, 360, 474
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.