Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Reverse (-)

2246992 .. 2247850

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACGAGCTGCAGTATGTCTCTCTTGGCTTTTGGGGTTGTGATCATGGTGTTGATGATCAGTTCATGTCCTGCAAATGGTCTCACATGCGATGACACCGCTCGCATTTTGACACCCTGCCAGGATTTTTTGGTCGGCAGCGGCCCTCCAACTCCTAGCACCGGTTGCTGTGGAGCTATGAGAAACTTGGTTTCTAGAGCCACATCCACCCAAGTACGTAGAGATCTGTGTGGATGTATGAAGCAGATTATTCTTGGCTTTCATGTTGATGTTGGGAAACTTCAATTCATCGTTCCTCAGTACTGCAAGGTCAAAATTCCTGTACCTCTTGATCCCAATGCCGACTGCAGCAAGGTACCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

122

Amino Acids

12.9

Weight (kDa)

8.37

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	24 - 107	3.8e-07	Probable lipid transfer
Tryp_alpha_amyl	PF00234	30 - 116	4.4e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	101
AciI	CCGC	2 cut(s)	99, 141
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	315
AfaI	GTAC	4 cut(s)	216, 302, 324, 357
AfiI	CCNNNNNNNGG	2 cut(s)	77, 161
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	9, 176
AluI	AGCT	2 cut(s)	9, 176
Alw26I	GTCTC	2 cut(s)	24, 86
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	3 cut(s)	9, 138, 348
ApoI	RAATTY	1 cut(s)	315
AsiGI	ACCGGT	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	150, 360
BciT130I	CCWGG	1 cut(s)	122
BclI	TGATCA	2 cut(s)	42, 57
BcoDI	GTCTC	2 cut(s)	24, 86
BfaI	CTAG	2 cut(s)	156, 195
BfmI	CTRYAG	2 cut(s)	10, 346
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	10, 139, 142, 349
BlsI	GCNGC	4 cut(s)	11, 140, 143, 350
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 161
Bse118I	RCCGGY	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	203, 239
BseLI	CCNNNNNNNGG	2 cut(s)	77, 161
BseMII	CTCAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	150, 360
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	77, 161
BsmAI	GTCTC	2 cut(s)	24, 86
BsnI	GGCC	1 cut(s)	144
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	42, 57, 223, 331
BspACI	CCGC	2 cut(s)	99, 141
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	2 cut(s)	14, 350
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssMI	GATC	4 cut(s)	42, 57, 223, 331
Bst2UI	CCWGG	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	203, 239
BstKTI	GATC	4 cut(s)	45, 60, 226, 334
BstMAI	GTCTC	2 cut(s)	24, 86
BstMBI	GATC	4 cut(s)	42, 57, 223, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	10, 346
BstSNI	TACGTA	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	150, 360
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	203, 239
Cac8I	GCNNGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	4 cut(s)	215, 301, 323, 356
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	4 cut(s)	46, 66, 87, 263
CviJI	RGCY	6 cut(s)	9, 29, 144, 176, 200, 258
CviKI_1	RGCY	6 cut(s)	9, 29, 144, 176, 200, 258
CviQI	GTAC	4 cut(s)	215, 301, 323, 356
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	44, 59, 225, 333
DpnII	GATC	4 cut(s)	42, 57, 223, 331
Eco105I	TACGTA	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	49, 69, 90, 266
FaiI	YATR	7 cut(s)	17, 47, 67, 88, 179, 239, 264
FatI	CATG	4 cut(s)	45, 65, 86, 262
FbaI	TGATCA	2 cut(s)	42, 57
Fnu4HI	GCNGC	4 cut(s)	10, 139, 142, 349
FokI	GGATG	2 cut(s)	190, 246
Fsp4HI	GCNGC	4 cut(s)	10, 139, 142, 349
FspBI	CTAG	2 cut(s)	156, 195
GluI	GCNGC	4 cut(s)	10, 139, 142, 349
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	4 cut(s)	49, 69, 90, 266
HpaII	CCGG	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	195, 329
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	4 cut(s)	12, 74, 306, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	49, 69, 90, 266
KpnI	GGTACC	1 cut(s)	359
Ksp22I	TGATCA	2 cut(s)	42, 57
Kzo9I	GATC	4 cut(s)	42, 57, 223, 331
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	6 cut(s)	84, 107, 130, 134, 175, 333
Lsp1109I	GCAGC	2 cut(s)	150, 360
MaeI	CTAG	2 cut(s)	156, 195
MaeII	ACGT	1 cut(s)	217
MalI	GATC	4 cut(s)	44, 59, 225, 333
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	4 cut(s)	42, 57, 223, 331
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	2 cut(s)	284, 315
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	3 cut(s)	156, 306, 336
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	4 cut(s)	42, 57, 223, 331
NlaIII	CATG	4 cut(s)	49, 69, 90, 266
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	11, 140, 143, 350
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	2 cut(s)	14, 350
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	4 cut(s)	216, 302, 324, 357
RsaNI	GTAC	4 cut(s)	215, 301, 323, 356
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	4 cut(s)	10, 139, 142, 349
Sau3AI	GATC	4 cut(s)	42, 57, 223, 331
Sau96I	GGNCC	1 cut(s)	143
ScaI	AGTACT	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	7 cut(s)	11, 178, 220, 312, 328, 357, 361
SfcI	CTRYAG	2 cut(s)	10, 346
SmiMI	CAYNNNNRTG	1 cut(s)	267
SnaBI	TACGTA	1 cut(s)	218
Sse9I	AATT	2 cut(s)	284, 315
SsiI	CCGC	2 cut(s)	99, 141
SspMI	CTAG	2 cut(s)	156, 195
StyD4I	CCNGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	220
TasI	AATT	2 cut(s)	284, 315
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	9, 138, 348
TspDTI	ATGAA	4 cut(s)	54, 251, 254, 277
XapI	RAATTY	1 cut(s)	315
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	2 cut(s)	156, 195
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.