Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Reverse (-)

13599726 .. 13600494

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGATGAAGCTGATGGGTTGGTCTCTGATAGTTTTTGGGTTGGTGGTTATGGTTTTGAACAATGCAGGTCCTACAAATGGGATCACATGCCAAGAGGCCCTGATGACTTTGATGCCCTGTGAGCCATACTTGGTGGGTTCTGGCCCAGGCAGTCCTGCCGTTCCTTGTTGTGCTGGTGTCCAAACCCTTGTTTCTGAGGCTACCTCCCCTGACATCCGCAGGAACCTCTGTGAATGCTTGAAAACAGCTGCAGCTGGCATGAAGATTGACCCAGGCAGACTAAAGGCCATCCCCGAATACTGTAAGGTCTCCGTTCCTGTACCTCTTGACCCCAACGTCGACTGCAGCAAAGTTCCTTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

123

Amino Acids

12.88

Weight (kDa)

5.28

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	61, 244
AjnI	CCWGG	2 cut(s)	148, 274
AluBI	AGCT	3 cut(s)	13, 251, 257
AluI	AGCT	3 cut(s)	13, 251, 257
Alw26I	GTCTC	2 cut(s)	30, 316
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	3 cut(s)	99, 145, 288
ApeKI	GCWGC	3 cut(s)	251, 254, 348
AspS9I	GGNCC	3 cut(s)	71, 100, 146
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	238, 266, 360
BccI	CCATC	2 cut(s)	10, 299
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	150, 276
BcoDI	GTCTC	2 cut(s)	30, 316
BfmI	CTRYAG	2 cut(s)	252, 346
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	252, 255, 349
BlsI	GCNGC	3 cut(s)	253, 256, 350
Bme1390I	CCNGG	2 cut(s)	150, 276
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	71, 100, 146
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	150, 276
BmsI	GCATC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BsaI	GGTCTC	2 cut(s)	30, 316
BsaJI	CCNNGG	2 cut(s)	148, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	2 cut(s)	150, 276
BseDI	CCNNGG	2 cut(s)	148, 274
BseGI	GGATG	2 cut(s)	216, 291
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	238, 266, 360
BshFI	GGCC	3 cut(s)	101, 147, 290
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	30, 316
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	101, 147, 290
Bso31I	GGTCTC	2 cut(s)	30, 316
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	3 cut(s)	101, 147, 290
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	227
BspMAI	CTGCAG	2 cut(s)	256, 350
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	92
BspTNI	GGTCTC	2 cut(s)	30, 316
BssECI	CCNNGG	2 cut(s)	148, 274
BssMI	GATC	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	150, 276
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	216, 291
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	2 cut(s)	30, 316
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	2 cut(s)	150, 276
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	2 cut(s)	148, 274
BstSFI	CTRYAG	2 cut(s)	252, 346
BstV1I	GCAGC	3 cut(s)	238, 266, 360
BsuRI	GGCC	3 cut(s)	101, 147, 290
BtsCI	GGATG	2 cut(s)	216, 291
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	3 cut(s)	71, 100, 146
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	2 cut(s)	90, 262
CviJI	RGCY	8 cut(s)	13, 101, 127, 147, 203, 251, 257, 290
CviKI_1	RGCY	8 cut(s)	13, 101, 127, 147, 203, 251, 257, 290
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	30, 316
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	2 cut(s)	71, 100
EcoRII	CCWGG	2 cut(s)	148, 274
FaeI	CATG	2 cut(s)	93, 265
FaiI	YATR	4 cut(s)	53, 91, 130, 263
FatI	CATG	2 cut(s)	89, 261
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	3 cut(s)	252, 255, 349
FokI	GGATG	2 cut(s)	203, 278
Fsp4HI	GCNGC	3 cut(s)	252, 255, 349
GluI	GCNGC	3 cut(s)	252, 255, 349
HaeIII	GGCC	3 cut(s)	101, 147, 290
Hin1II	CATG	2 cut(s)	93, 265
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	30, 199, 368
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	68, 254, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	93, 265
Kzo9I	GATC	1 cut(s)	84
Lsp1109I	GCAGC	3 cut(s)	238, 266, 360
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	1 cut(s)	339
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	277
MnlI	CCTC	5 cut(s)	91, 193, 217, 239, 336
MspA1I	CMGCKG	2 cut(s)	251, 257
MspR9I	CCNGG	2 cut(s)	150, 276
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	150, 276
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	2 cut(s)	93, 265
NlaIV	GGNNCC	1 cut(s)	227
NspI	RCATGY	1 cut(s)	93
PctI	GAATGC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	253, 256, 350
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	148, 274
PspGI	CCWGG	2 cut(s)	148, 274
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	3 cut(s)	71, 100, 146
PspPPI	RGGWCCY	1 cut(s)	71
PstI	CTGCAG	2 cut(s)	256, 350
PvuII	CAGCTG	2 cut(s)	251, 257
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SalI	GTCGAC	1 cut(s)	341
SatI	GCNGC	3 cut(s)	252, 255, 349
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	3 cut(s)	71, 100, 146
ScrFI	CCNGG	2 cut(s)	150, 276
SetI	ASST	9 cut(s)	15, 73, 209, 231, 253, 259, 312, 328, 342
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	2 cut(s)	252, 346
SinI	GGWCC	1 cut(s)	71
SsiI	CCGC	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	148, 274
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	342
TseI	GCWGC	3 cut(s)	251, 254, 348
TspDTI	ATGAA	2 cut(s)	23, 278
TspGWI	ACGGA	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	71
XceI	RCATGY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.