Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Reverse (-)

40782907 .. 40783652

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1328900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGATGAAATTGGTGATCTTTTTCGGGCTGATGGTTATGGTTCTGAACCATGCAAGTCCTGCAAATGGCGATATCACATGCCAAGAGGCCTTGATGGATTTGATGCCATGTAAGGAATACTTGACGGGGTCCGGCCCCGGGACTCCTCCGATTACTTGTTGCATTGGTGTGAAAACAGTTTCTGATGCGGCTACCACCAGAGAGTGTCGGAGGAACCTCTGTGAATGTTTCAAGAAAGCAGCTGCTGGCATTCCGATCAACCCTGACAGACTCAGGCAGCTTCCTGATCTCTGCCATGTGTCCCTTCCCGTTCCTCTCGACCCCAAAATTGACTGCGCAACAATTCCTCAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

120

Amino Acids

12.87

Weight (kDa)

6.05

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	17 - 103	3.1e-10	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 113	2.8e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	340
AciI	CCGC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	68, 141
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	2 cut(s)	245, 283
AluI	AGCT	2 cut(s)	245, 283
AlwNI	CAGNNNCTG	2 cut(s)	185, 248
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	90, 136
ApeKI	GCWGC	3 cut(s)	242, 245, 280
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	132, 137
AsuC2I	CCSGG	2 cut(s)	141, 142
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	232, 254, 292
BccI	CCATC	2 cut(s)	28, 91
BcnI	CCSGG	2 cut(s)	141, 142
BisI	GCNGC	4 cut(s)	192, 243, 246, 281
BlsI	GCNGC	4 cut(s)	193, 244, 247, 282
Bme1390I	CCNGG	2 cut(s)	141, 142
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	132, 137
BmiI	GGNNCC	3 cut(s)	133, 139, 218
BmrFI	CCNGG	2 cut(s)	141, 142
BmsI	GCATC	2 cut(s)	96, 178
BpuEI	CTTGAG	1 cut(s)	336
BpuMI	CCSGG	2 cut(s)	141, 142
BsaJI	CCNNGG	2 cut(s)	139, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 141
BseDI	CCNNGG	2 cut(s)	139, 140
BseLI	CCNNNNNNNGG	2 cut(s)	68, 141
BseMII	CTCAG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	232, 254, 292
BshFI	GGCC	2 cut(s)	92, 138
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	135, 141
BslFI	GGGAC	2 cut(s)	157, 289
BslI	CCNNNNNNNGG	2 cut(s)	68, 141
BsmFI	GGGAC	2 cut(s)	157, 289
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	92, 138
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	18, 258, 289
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	92, 138
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	133, 139, 218
BssECI	CCNNGG	2 cut(s)	139, 140
BssMI	GATC	3 cut(s)	18, 258, 289
Bst4CI	ACNGT	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	21, 261, 292
BstMBI	GATC	3 cut(s)	18, 258, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	139, 140
BstV1I	GCAGC	3 cut(s)	232, 254, 292
BsuRI	GGCC	2 cut(s)	92, 138
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	2 cut(s)	185, 248
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	132, 137
Cfr9I	CCCGGG	1 cut(s)	140
CviAII	CATG	4 cut(s)	53, 81, 111, 299
CviJI	RGCY	6 cut(s)	31, 92, 138, 194, 245, 283
CviKI_1	RGCY	6 cut(s)	31, 92, 138, 194, 245, 283
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	20, 260, 291
DpnII	GATC	3 cut(s)	18, 258, 289
Eco147I	AGGCCT	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	4 cut(s)	56, 84, 114, 302
FaiI	YATR	5 cut(s)	41, 54, 82, 112, 300
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	2 cut(s)	157, 289
FatI	CATG	4 cut(s)	52, 80, 110, 298
Fnu4HI	GCNGC	4 cut(s)	192, 243, 246, 281
Fsp4HI	GCNGC	4 cut(s)	192, 243, 246, 281
FspI	TGCGCA	1 cut(s)	340
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	4 cut(s)	192, 243, 246, 281
HaeIII	GGCC	2 cut(s)	92, 138
HapII	CCGG	2 cut(s)	135, 141
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	56, 84, 114, 302
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	145, 273
HpaII	CCGG	2 cut(s)	135, 141
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	6 cut(s)	48, 153, 187, 213, 258, 359
Hpy188III	TCNNGA	3 cut(s)	235, 287, 320
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	56, 65, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	56, 84, 114, 302
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	18, 258, 289
LpnPI	CCDG	8 cut(s)	75, 148, 154, 214, 234, 262, 279, 300
Lsp1109I	GCAGC	3 cut(s)	232, 254, 292
LweI	GCATC	2 cut(s)	96, 178
MalI	GATC	3 cut(s)	20, 260, 291
MboI	GATC	3 cut(s)	18, 258, 289
MluCI	AATT	3 cut(s)	11, 330, 345
MlyI	GAGTC	2 cut(s)	139, 267
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	6 cut(s)	82, 159, 207, 230, 327, 360
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	135, 141
MspR9I	CCNGG	2 cut(s)	141, 142
Mva1269I	GAATGC	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	2 cut(s)	141, 142
NdeII	GATC	3 cut(s)	18, 258, 289
NlaIII	CATG	4 cut(s)	56, 84, 114, 302
NlaIV	GGNNCC	3 cut(s)	133, 139, 218
NsbI	TGCGCA	1 cut(s)	340
NspI	RCATGY	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	193, 244, 247, 282
PleI	GAGTC	2 cut(s)	139, 267
PpsI	GAGTC	2 cut(s)	139, 267
PspN4I	GGNNCC	3 cut(s)	133, 139, 218
PspPI	GGNCC	2 cut(s)	132, 137
PstNI	CAGNNNCTG	2 cut(s)	185, 248
PsyI	GACNNNGTC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	4 cut(s)	192, 243, 246, 281
Sau3AI	GATC	3 cut(s)	18, 258, 289
Sau96I	GGNCC	2 cut(s)	132, 137
SchI	GAGTC	2 cut(s)	139, 267
ScrFI	CCNGG	2 cut(s)	141, 142
SetI	ASST	3 cut(s)	222, 247, 285
SfaNI	GCATC	2 cut(s)	96, 178
SinI	GGWCC	1 cut(s)	132
SmaI	CCCGGG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	11, 330, 345
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	139, 140
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	11, 330, 345
TauI	GCSGC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	242, 245, 280
TspDTI	ATGAA	1 cut(s)	23
TspMI	CCCGGG	1 cut(s)	140
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	132
XceI	RCATGY	1 cut(s)	84
XmaI	CCCGGG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.