Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004839

Physical Location & Seq

Genomic Coordinates Reverse (-)

5905580 .. 5907281

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACTAGTTGCTGGTCTCTCTTGGGTTTTGGTATTGTGATCATGGTGTTGATGATCAGTCCATATCCTGCAAATGGCCTCACATGTGATGAGACCGCAGGCATTTTGAATCCCTGTCAAGATTTTTTGGTTGGAAATGGCCCTCCAACTCCTAGCGCTTCTTGCTGTGGAGCTGTGAAAGAATTGGTTTCTAAAGTTACATCCAGACAAGTACGTAGAGATCTGTGTGAATGTATGAAGCAGATTATTCTTGCCTTTCATATTGACGTCGGAAAACTTCAATACATCATTCCTCAGTATTGCAAGGTCACAATTCCTGTACCTCTTGATCCCAACGCAGACTGCAGGGTCCCACAGCGCCGCAACCGCGAGCCAATGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

8.41

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	22 - 106	4.6e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	29 - 115	9.3e-07	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004839)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02840 FvH4_3g01190
malus_domestica	MD10G1328900.v1.1
prunus_persica	Prupe.4G013200_v2.0.a1 Prupe.4G217000_v2.0.a1
pyrus_communis	pycom10g27860
rosa_chinensis	RchiOBHm_Chr5g0047311 RchiOBHm_Chr5g0075671 RchiOBHm_Chr6g0247621
rosa_laevigata	RLG00000015189 RLG00000034489
rosa_multiflora	Rmu_sc0000580.1_g000125 Rmu_sc0003092.1_g000052 Rmu_sc0003441.1_g000086
rosa_roxburghii	Rroxscaffold_1G00034040 Rroxscaffold_7G00213830
rosa_rugosa	Rorug05G0235600 Rorug05G0527600
rosa_samantha	Rh5AG314700 Rh5DG334200 Rh6AG040900 Rh6AG041200 Rh6AG041900 Rh6BG036300 Rh6BG036500 Rh6BG036800 Rh6CG036200
rosa_wichuraiana	Rw5G029420 Rw5G046240 Rw6G003590 Rw6G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AatII	GACGTC	1 cut(s)	270
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	96, 361, 367
AclWI	GGATC	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	213, 321
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	109, 281
AhlI	ACTAGT	1 cut(s)	5
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	21, 86
AlwI	GGATC	1 cut(s)	323
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	2 cut(s)	76, 139
AspLEI	GCGC	2 cut(s)	158, 360
AspS9I	GGNCC	2 cut(s)	140, 349
AvaII	GGWCC	1 cut(s)	349
BclI	TGATCA	2 cut(s)	39, 54
BcoDI	GTCTC	2 cut(s)	21, 86
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 153
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	2 cut(s)	159, 361
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	140, 349
BmiI	GGNNCC	2 cut(s)	350, 351
BsaAI	YACGTR	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	2 cut(s)	21, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	78, 141
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	21, 86
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	78, 141
Bso31I	GGTCTC	2 cut(s)	21, 86
Bsp143I	GATC	4 cut(s)	39, 54, 220, 328
BspACI	CCGC	3 cut(s)	96, 361, 367
BspANI	GGCC	2 cut(s)	78, 141
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	350, 351
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	2 cut(s)	21, 86
BssMI	GATC	4 cut(s)	39, 54, 220, 328
BssNI	GRCGYC	1 cut(s)	267
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	100, 371
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	2 cut(s)	159, 361
BstHHI	GCGC	2 cut(s)	158, 360
BstKTI	GATC	4 cut(s)	42, 57, 223, 331
BstMAI	GTCTC	2 cut(s)	21, 86
BstMBI	GATC	4 cut(s)	39, 54, 220, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 366
BstNSI	RCATGY	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	343
BstSNI	TACGTA	1 cut(s)	215
BstUI	CGCG	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	78, 141
BtsCI	GGATG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	100, 371
CfoI	GCGC	2 cut(s)	158, 360
Cfr13I	GGNCC	2 cut(s)	140, 349
Csp6I	GTAC	2 cut(s)	212, 320
CviAII	CATG	2 cut(s)	43, 84
CviJI	RGCY	4 cut(s)	78, 141, 173, 373
CviKI_1	RGCY	4 cut(s)	78, 141, 173, 373
CviQI	GTAC	2 cut(s)	212, 320
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	4 cut(s)	41, 56, 222, 330
DpnII	GATC	4 cut(s)	39, 54, 220, 328
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
Eco105I	TACGTA	1 cut(s)	215
Eco31I	GGTCTC	2 cut(s)	21, 86
Eco47I	GGWCC	1 cut(s)	349
Eco47III	AGCGCT	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	349
FaeI	CATG	2 cut(s)	46, 87
FaiI	YATR	5 cut(s)	44, 64, 85, 236, 261
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	2 cut(s)	42, 83
FbaI	TGATCA	2 cut(s)	39, 54
Fnu4HI	GCNGC	1 cut(s)	361
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	361
FspBI	CTAG	2 cut(s)	6, 153
GlaI	GCGC	2 cut(s)	157, 359
GluI	GCNGC	1 cut(s)	361
HaeII	RGCGCY	2 cut(s)	159, 361
HaeIII	GGCC	2 cut(s)	78, 141
HhaI	GCGC	2 cut(s)	158, 360
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	46, 87
Hin6I	GCGC	2 cut(s)	156, 358
HinP1I	GCGC	2 cut(s)	156, 358
HinfI	GANTC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	119, 204, 326
Hpy99I	CGWCG	1 cut(s)	272
HpyCH4IV	ACGT	2 cut(s)	214, 267
HpyCH4V	TGCA	3 cut(s)	71, 303, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 366
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	214, 267
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	46, 87
HspAI	GCGC	2 cut(s)	156, 358
KflI	GGGWCCC	1 cut(s)	349
Ksp22I	TGATCA	2 cut(s)	39, 54
Kzo9I	GATC	4 cut(s)	39, 54, 220, 328
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	6 cut(s)	81, 84, 127, 217, 330, 331
MaeI	CTAG	2 cut(s)	6, 153
MaeII	ACGT	2 cut(s)	214, 267
MaeIII	GTNAC	2 cut(s)	196, 307
MalI	GATC	4 cut(s)	41, 56, 222, 330
MboI	GATC	4 cut(s)	39, 54, 220, 328
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	2 cut(s)	182, 312
MmeI	TCCRAC	3 cut(s)	112, 170, 250
MnlI	CCTC	4 cut(s)	89, 153, 303, 333
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	162, 366
NdeII	GATC	4 cut(s)	39, 54, 220, 328
NlaIII	CATG	2 cut(s)	46, 87
NlaIV	GGNNCC	2 cut(s)	350, 351
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	87
PciI	ACATGT	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	349
PscI	ACATGT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	350, 351
PspPI	GGNCC	2 cut(s)	140, 349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	213, 321
RsaNI	GTAC	2 cut(s)	212, 320
SatI	GCNGC	1 cut(s)	361
Sau3AI	GATC	4 cut(s)	39, 54, 220, 328
Sau96I	GGNCC	2 cut(s)	140, 349
SetI	ASST	5 cut(s)	175, 217, 270, 309, 325
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	349
SnaBI	TACGTA	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	2 cut(s)	182, 312
SsiI	CCGC	3 cut(s)	96, 361, 367
SspMI	CTAG	2 cut(s)	6, 153
TaiI	ACGT	2 cut(s)	217, 270
TasI	AATT	2 cut(s)	182, 312
TauI	GCSGC	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	248, 251
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	2 cut(s)	6, 153
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.