Rorug05G0527600

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000937
Physical Location & Seq
Reverse (-)
71617561 .. 71621152
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0527600.1

Sequence Viewer

Length: 951 bp
ATGCTGAGTAAAGGTATCTTTCCGGATCGCCTCACTTTCAATGTCTTTGTTGATACATTTTGTAAGGAAGGGATGGTTGTGGAAGCCAAAAGTGTGGTTCAAATGATGATTCAAAGACATATTGAACCTAATGTCGTTACATACAACTCACTTATGGACGGTTACTGTTTGCGAGGAGAAATGCACGAGGCAAGACTAGTTTTTGACCTTATCATTAGCAGGGGCTCCATGGTTAATGTTCGGAGTTGTAGCATATTGATAAATGGATATTGCAAGGGTAAAAAGCTCGACAAGGCTTACAAGATTTTCAAGGAAATGCCTCGTACGGAACTTGTTCCTGATACCGTTACTTATACCACTCTTATTGATGGTCTTTGCAAAGCGGGGAGACTACAAGAAGCAGAAAAGTTGTTCTCTGAGATGCTAGGTTGTGGACAGCTTCCAAATGTTCAAACTTACGCTGTTTTACTTGATGGCTTGTGTAACAATCAGCAACTCTCTACGGCAATAGAATTGCTTAAAGAGATGGAAGCCAACAAAGTAGAACTTAATATTGTAGTTTACAATCTTGTTATTGAAGGTTTGTGCAAAGCTGGAAAAATTGAATCCGCAAGAGATCTTTTCTGTGTTTTGTCATCAAAAGGAGTTCGGCCTGATGTGAGAACATACACTATAATGATTCAGGGCCTTTGTCATCATGGCTTAATAATTGAAGCAGAAAAGCTGCTGAGAGAAATGGGAGGGGAAGGATGTTCTCCAGATGGTTGTACCTATAACATCATTATCCGAGGGTTGTTAAATAACTGTGAGACATCATGGGCTATGAAACTAATTCAAGAAATGCTTGAGAGGGGTTTCTCTGCAGATGCATCAACAATGGAATTGATTGTTGATTTATTGTCGAAGGATATAGTAGATCCGGCTTTGTTGCAGCTGTTAAAAGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

316

Amino Acids

35.28

Weight (kDa)

5.43

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 3 - 54 4.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 4 - 36 2e-07 PPR repeat
PPR_2 PF13041 8 - 56 1.8e-12 PPR repeat family
TPR_24 PF23276 23 - 140 5.5e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 40 - 69 3.3e-10 PPR repeat
PPR_2 PF13041 43 - 92 5.1e-13 PPR repeat family
PPR PF01535 46 - 75 5.4e-07 PPR repeat
PPR_1 PF12854 75 - 106 1.4e-07 PPR repeat
PPR_2 PF13041 79 - 127 6.4e-17 PPR repeat family
PPR PF01535 82 - 108 6.8e-07 PPR repeat
PPR_long PF17177 94 - 185 2.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 101 - 158 6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 111 - 141 4.2e-16 PPR repeat
PPR_2 PF13041 113 - 162 3e-19 PPR repeat family
PPR PF01535 116 - 145 1.1e-10 PPR repeat
TPR_24 PF23276 116 - 208 3e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 145 - 177 2.4e-07 PPR repeat
PPR_3 PF13812 172 - 228 8.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 181 - 208 7.4e-07 PPR repeat
PPR_2 PF13041 184 - 232 1.1e-17 PPR repeat family
PPR_3 PF13812 212 - 263 2.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 214 - 246 1.4e-11 PPR repeat
PPR PF01535 222 - 251 1.8e-08 PPR repeat
PPR_2 PF13041 227 - 266 7.7e-10 PPR repeat family
PPR_2 PF13041 256 - 300 6.5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 22
AciI CCGC 2 cut(s) 383, 609
AclWI GGATC 2 cut(s) 33, 911
AfaI GTAC 2 cut(s) 325, 769
AhlI ACTAGT 1 cut(s) 196
AluBI AGCT 5 cut(s) 286, 439, 593, 724, 934
AluI AGCT 5 cut(s) 286, 439, 593, 724, 934
Alw26I GTCTC 2 cut(s) 382, 803
AlwI GGATC 2 cut(s) 33, 911
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 2 cut(s) 650, 685
ApeKI GCWGC 2 cut(s) 724, 931
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 685
BanII GRGCYC 1 cut(s) 227
BauI CACGAG 1 cut(s) 185
BbvI GCAGC 2 cut(s) 711, 943
BccI CCATC 5 cut(s) 67, 362, 467, 520, 755
BceAI ACGGC 1 cut(s) 519
BcoDI GTCTC 2 cut(s) 382, 803
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 2 cut(s) 197, 425
BfmI CTRYAG 1 cut(s) 861
BglII AGATCT 1 cut(s) 616
BisI GCNGC 2 cut(s) 725, 932
BlsI GCNGC 2 cut(s) 726, 933
BmgT120I GGNCC 1 cut(s) 685
BmiI GGNNCC 1 cut(s) 226
BmsI GCATC 3 cut(s) 411, 856, 878
BpmI CTGGAG 1 cut(s) 741
BpuEI CTTGAG 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 228, 787
BsaWI WCCGGW 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 228, 787
BseGI GGATG 2 cut(s) 78, 755
BseMII CTCAG 2 cut(s) 408, 719
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 711, 943
BshFI GGCC 2 cut(s) 652, 687
BsiSI CCGG 2 cut(s) 23, 920
BsiWI CGTACG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 382, 803
BsnI GGCC 2 cut(s) 652, 687
Bsp1286I GDGCHC 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 25, 616, 916
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 2 cut(s) 383, 609
BspANI GGCC 2 cut(s) 652, 687
BspCNI CTCAG 2 cut(s) 409, 720
BspEI TCCGGA 1 cut(s) 22
BspHI TCATGA 1 cut(s) 947
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 2 cut(s) 33, 911
BssECI CCNNGG 2 cut(s) 228, 787
BssMI GATC 3 cut(s) 25, 616, 916
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 185
Bst4CI ACNGT 4 cut(s) 161, 167, 346, 806
BstDEI CTNAG 3 cut(s) 5, 417, 728
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 78, 755
BstKTI GATC 3 cut(s) 28, 619, 919
BstMAI GTCTC 2 cut(s) 382, 803
BstMBI GATC 3 cut(s) 25, 616, 916
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 711, 943
BstX2I RGATCY 2 cut(s) 616, 916
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 2 cut(s) 616, 916
BsuRI GGCC 2 cut(s) 652, 687
BtgI CCRYGG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 78, 755
CciI TCATGA 1 cut(s) 947
Cfr13I GGNCC 1 cut(s) 685
Csp6I GTAC 2 cut(s) 324, 768
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 4 cut(s) 229, 698, 816, 948
CviQI GTAC 2 cut(s) 324, 768
DdeI CTNAG 3 cut(s) 5, 417, 728
DpnI GATC 3 cut(s) 27, 618, 918
DpnII GATC 3 cut(s) 25, 616, 916
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 685
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 4 cut(s) 232, 701, 819, 951
FalI AAGNNNNNCTT 4 cut(s) 531, 563, 828, 860
FatI CATG 4 cut(s) 228, 697, 815, 947
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 725, 932
FokI GGATG 2 cut(s) 85, 762
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 725, 932
FspBI CTAG 2 cut(s) 197, 425
GluI GCNGC 2 cut(s) 725, 932
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 2 cut(s) 652, 687
HapII CCGG 2 cut(s) 23, 920
Hin1II CATG 4 cut(s) 232, 701, 819, 951
HinfI GANTC 4 cut(s) 109, 605, 679, 944
HpaII CCGG 2 cut(s) 23, 920
Hpy166II GTNNAC 2 cut(s) 434, 562
Hpy188I TCNGA 3 cut(s) 243, 418, 788
Hpy188III TCNNGA 5 cut(s) 23, 338, 758, 836, 948
Hpy8I GTNNAC 2 cut(s) 434, 562
HpyAV CCTTC 4 cut(s) 62, 572, 740, 898
HpyCH4III ACNGT 4 cut(s) 161, 167, 346, 806
HpyCH4V TGCA 7 cut(s) 184, 273, 378, 588, 863, 869, 931
HpyF3I CTNAG 3 cut(s) 5, 417, 728
Hsp92II CATG 4 cut(s) 232, 701, 819, 951
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 25, 616, 916
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 8 cut(s) 36, 205, 351, 579, 666, 668, 771, 933
Lsp1109I GCAGC 2 cut(s) 711, 943
LweI GCATC 3 cut(s) 411, 856, 878
MaeI CTAG 2 cut(s) 197, 425
MaeIII GTNAC 4 cut(s) 136, 161, 346, 482
MalI GATC 3 cut(s) 27, 618, 918
MboI GATC 3 cut(s) 25, 616, 916
MflI RGATCY 2 cut(s) 616, 916
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 5 cut(s) 512, 600, 708, 831, 881
MnlI CCTC 7 cut(s) 41, 167, 181, 330, 734, 782, 843
Mph1103I ATGCAT 1 cut(s) 871
MroI TCCGGA 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 6 cut(s) 234, 519, 549, 704, 797, 938
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 934
MspI CCGG 2 cut(s) 23, 920
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 25, 616, 916
NlaIII CATG 4 cut(s) 232, 701, 819, 951
NlaIV GGNNCC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 871
PagI TCATGA 1 cut(s) 947
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 109, 605, 679, 944
Pfl23II CGTACG 1 cut(s) 323
PkrI GCNGC 2 cut(s) 726, 933
PspLI CGTACG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 685
PstI CTGCAG 1 cut(s) 865
PsuI RGATCY 2 cut(s) 616, 916
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 2 cut(s) 325, 769
RsaNI GTAC 2 cut(s) 324, 768
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 6 cut(s) 234, 519, 549, 704, 797, 938
SatI GCNGC 2 cut(s) 725, 932
Sau3AI GATC 3 cut(s) 25, 616, 916
Sau96I GGNCC 1 cut(s) 685
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 3 cut(s) 411, 856, 878
SfcI CTRYAG 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
SpeI ACTAGT 1 cut(s) 196
Sse9I AATT 5 cut(s) 512, 600, 708, 831, 881
SsiI CCGC 2 cut(s) 383, 609
SspI AATATT 1 cut(s) 553
SspMI CTAG 2 cut(s) 197, 425
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 4 cut(s) 161, 167, 346, 806
TaqI TCGA 2 cut(s) 288, 902
TasI AATT 5 cut(s) 512, 600, 708, 831, 881
TfiI GAWTC 4 cut(s) 109, 605, 679, 944
Tru1I TTAA 6 cut(s) 234, 519, 549, 704, 797, 938
Tru9I TTAA 6 cut(s) 234, 519, 549, 704, 797, 938
TseI GCWGC 2 cut(s) 724, 931
TspDTI ATGAA 2 cut(s) 839, 936
TspGWI ACGGA 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 197, 425
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.