Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

15625266 .. 15627089

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGGATGGAAGATGCTGGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTAGGAATGCTAGTGCTGAGGCTCTACTACTTGGTTCTCATTTGGATACTGTTGTTGAGGCCAGGATATTTGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

45

Amino Acids

4.93

Weight (kDa)

4.96

Isoelectric Point (pI)

12.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	117
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BbvCI	CCTCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	2
Bpu10I	CCTNAGC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	40
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	109
BstAUI	TGTACA	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	2 cut(s)	80, 119
CviKI_1	RGCY	2 cut(s)	80, 119
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	119
FaeI	CATG	1 cut(s)	47
FaiI	YATR	1 cut(s)	45
FatI	CATG	1 cut(s)	43
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	47
LpnPI	CCDG	2 cut(s)	106, 133
LweI	GCATC	1 cut(s)	2
MaeI	CTAG	1 cut(s)	69
MboII	GAAGA	1 cut(s)	21
MnlI	CCTC	3 cut(s)	49, 70, 109
MspR9I	CCNGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	121
NlaIII	CATG	1 cut(s)	47
PctI	GAATGC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	2
SgeI	CNNG	8 cut(s)	28, 43, 56, 62, 81, 101, 132, 133
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	49
TatI	WGTACW	1 cut(s)	40
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.