Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

18583074 .. 18587595

Gene Structure 4522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAGCTCAACGATAAAGCTACTGAATTGTCTTCACTAGGTTTCACTGTGATTTGGTTACCACCCCCTACAGATTCTGTGTCGCCTGAAGGGTACATGCCGACGGATTTGTATAATCTGAACTCCAGACAGGGTGTGGCATTGAATTTTTCAACTGCTTGCAGTCCAGTAATGGCAACAAAAACTGGAAGAACAAAGATGATGAGACTTTTACGAGATGATGATGCAGAGGATCAAGGTAGTCAAAGACAGGGAGAGAGAATATCTGATTATCAAGCTTTGGTTGCTATTTTTGATATGGACACACGTCCTCAGATTATATCAAAAAAGTGGAAACAAGGTAACAGTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

117

Amino Acids

13.11

Weight (kDa)

5.29

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	145, 153
AjiI	CACGTC	1 cut(s)	308
AluBI	AGCT	3 cut(s)	7, 20, 278
AluI	AGCT	3 cut(s)	7, 20, 278
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	308
BmsI	GCATC	1 cut(s)	214
BoxI	GACNNNNGTC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	167, 190
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	167, 190
BsiHKAI	GWGCWC	1 cut(s)	9
BsmAI	GTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	167, 190
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	49, 347
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	100
BstPAI	GACNNNNGTC	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	3 cut(s)	7, 20, 278
CviKI_1	RGCY	3 cut(s)	7, 20, 278
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	98, 114, 299, 320
FatI	CATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	109
Hin1II	CATG	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	120, 268, 315
Hpy188III	TCNNGA	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	49, 347
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	162, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	99, 116, 139, 171, 180, 236
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	57, 341
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	24, 201
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	26, 145
MnlI	CCTC	2 cut(s)	223, 321
MseI	TTAA	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	74
PshAI	GACNNNNGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	352
Sau3AI	GATC	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	9, 22, 43, 241, 280, 310, 343
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	26, 145
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	49, 347
TaiI	ACGT	1 cut(s)	310
TasI	AATT	2 cut(s)	26, 145
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.