Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

60957325 .. 60960126

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAATCTGACAATGAGAGGATGGAAATATTATTTGGGCATGCATGTGATCAAAGGTTCATGCAAAAGGAGGGAGCAAATGGACGGACAGGCACGGGATTTGAAATATTGTGCCAAGGTTTTAATTGGGAATCTCATAAATCTGGAAGATGGTACGTGGAGCTCAAAGATAGAGCTGTTGAATTGTCTTCACTAGGTTTCACTGTGATTTGGTTACCATCCCCTACAGATTCTGTGTCGCCTGAAGGGTACATGCCGACGGATTTGTATAATCTGAACTCCAGTGCATTGGTGTCAGGTCTCAGTTATGCTCCATTCGAGTCATCGTCTCAGAAATACTTGACGGACAATGGGAGTGTCTTTATGACCAAGGTGGGTATTTCATTCTCAATGATTTTCAAGTTTTGTAAATCTCTTGGTTTCTTCAGTAAATTCGTCCATGATGCTCACAGGTGTTCTTCAAAGATCGATGATGCCATGAGCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

164

Amino Acids

18.32

Weight (kDa)

6.07

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	264, 409
AfaI	GTAC	2 cut(s)	155, 251
AgsI	TTSAA	4 cut(s)	104, 182, 400, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	163, 176
AluI	AGCT	2 cut(s)	163, 176
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	305, 333
AlwNI	CAGNNNCTG	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	165
BccI	CCATC	3 cut(s)	16, 144, 226
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	305, 333
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	433, 463
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	265
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	115, 369
Bse1I	ACTGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	115, 369
BseGI	GGATG	2 cut(s)	27, 218
BseMII	CTCAG	2 cut(s)	316, 344
BseNI	ACTGG	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	305, 333
BsmBI	CGTCTC	1 cut(s)	333
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	49, 465
BspCNI	CTCAG	2 cut(s)	315, 343
BspDI	ATCGAT	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	115, 369
BssMI	GATC	2 cut(s)	49, 465
BssT1I	CCWWGG	2 cut(s)	115, 369
Bst4CI	ACNGT	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	302, 330
BstEII	GGTNACC	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	27, 218
BstKTI	GATC	2 cut(s)	52, 468
BstMAI	GTCTC	2 cut(s)	305, 333
BstMBI	GATC	2 cut(s)	49, 465
BstNSI	RCATGY	3 cut(s)	44, 48, 256
BstPI	GGTNACC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	27, 218
BtsIMutI	CAGTG	2 cut(s)	201, 289
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	154, 250
CviAII	CATG	6 cut(s)	41, 45, 61, 253, 440, 478
CviJI	RGCY	2 cut(s)	163, 176
CviKI_1	RGCY	2 cut(s)	163, 176
CviQI	GTAC	2 cut(s)	154, 250
DdeI	CTNAG	2 cut(s)	302, 330
DpnI	GATC	2 cut(s)	51, 467
DpnII	GATC	2 cut(s)	49, 465
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	2 cut(s)	115, 369
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	264, 409
Eco91I	GGTNACC	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	115, 369
EcoT22I	ATGCAT	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	115, 369
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	6 cut(s)	44, 48, 64, 256, 443, 481
FatI	CATG	6 cut(s)	40, 44, 60, 252, 439, 477
FbaI	TGATCA	1 cut(s)	49
FokI	GGATG	2 cut(s)	34, 205
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	265
Hin1II	CATG	6 cut(s)	44, 48, 64, 256, 443, 481
HinfI	GANTC	4 cut(s)	5, 131, 230, 320
Hpy188I	TCNGA	3 cut(s)	10, 276, 333
Hpy188III	TCNNGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	44, 64, 287
HpyF3I	CTNAG	2 cut(s)	302, 330
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	6 cut(s)	44, 48, 64, 256, 443, 481
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	49, 465
LmnI	GCTCC	3 cut(s)	74, 160, 316
LpnPI	CCDG	6 cut(s)	75, 129, 255, 282, 295, 436
LweI	GCATC	2 cut(s)	433, 463
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	2 cut(s)	51, 467
MboI	GATC	2 cut(s)	49, 465
MboII	GAAGA	4 cut(s)	159, 180, 415, 450
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	3 cut(s)	124, 182, 431
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	2 cut(s)	12, 64
Mph1103I	ATGCAT	1 cut(s)	46
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	45
NdeII	GATC	2 cut(s)	49, 465
NlaIII	CATG	6 cut(s)	44, 48, 64, 256, 443, 481
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	3 cut(s)	44, 48, 256
PaeI	GCATGC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	5, 131, 230
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	155, 251
RsaNI	GTAC	2 cut(s)	154, 250
RseI	CAYNNNNRTG	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	49, 465
SchI	GAGTC	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	9 cut(s)	59, 121, 159, 165, 178, 199, 301, 375, 455
SfaNI	GCATC	2 cut(s)	433, 463
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	45
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	124, 182, 431
SspI	AATATT	2 cut(s)	30, 108
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	115, 369
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	318, 468
TasI	AATT	3 cut(s)	124, 182, 431
TfiI	GAWTC	3 cut(s)	5, 131, 230
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	208, 289
TspDTI	ATGAA	2 cut(s)	49, 372
TspGWI	ACGGA	3 cut(s)	100, 275, 359
TspRI	CASTG	2 cut(s)	208, 289
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	3 cut(s)	44, 48, 256
XspI	CTAG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.