Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002387.1

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

36769 .. 41994

Gene Structure 5226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002387.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgacccaactgtccctggatttgggtttgaatcacaaaattgctgcaggtgtttttggagagtcagaaaagtgctgcggggggggggttggttgggctgattggggaaaatggtggagctgcagacgccaaaaatctacgggtgaagctatacttgaaccattgaatgaacttttgtcatcagaggtgaccaacttgcaaaaggagggagtaaatggacgttgggcattgtttacttgggaagaaggaactgcaggatttctttttgttttcaagctaagtgaaagtacatggttgaaatgtaagggcaatgacttctacatccccctttcaagcgcaaataactcacctgctgcagcaaaggaggatcaatctgaaggtgctgatgtagatgagggaagtgcagaagaaatagatgaaagttcttttagtgaatatgccaatggaataataaatgatataaggaccctgggacaggcacgggatttggaatatcgtgccaaggttttaattgggaatctcataaatctggaagatggtacatactacatggagctcaaagataaagctgctgaattgtcttcactaggttttactgtgatttggttaccaccccctacagattctgtgtcacctaaagggtacatgccgacggatttgtacaatctgaactccagacagggtgtggcattgaatttttcaactggtttcagttcagtaatggcaacaaaaactggaagaacaaagatgatgagacttttacgagatgatgatgcagaggatcaaggtctcagttatgctccattcgagtcagcgtcgcagaaatacttgacggacaatgggagtgtctttatgaccaagccgaaaaaaaaaaccctaaaactatctctcacaaaatctgccgcacacctcctcatcctcaccagcccgctgcaacctccctggcaacgcagcctcctgcagcccaaccttcagccagcctccttgcacaaccgcgcacgccccagcctcctaccgcaagcagccgcgcactcccttcgccctgcagccagcgcgcccagcaacccaccacctgcagcccgcgcttctgccatcccaccagccaacgcagcccagcagcacacgcttgctaccgccaccacaccagcagcccacgctgcacagacgccctcctgcgtcgctgccctgccttctgcacagcgcccccgcacccagacgccgccacccgctgctgctttgctcaaccgcctgcaacccgaccacgcaccagcccgcctactcgctccctgcagccgcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

433

Amino Acids

46.75

Weight (kDa)

7.05

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	38, 358, 1081
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	3 cut(s)	38, 358, 1081
AccII	CGCG	4 cut(s)	996, 1028, 1055, 1083
AclWI	GGATC	2 cut(s)	375, 789
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	2 cut(s)	396, 956
AcyI	GRCGYC	3 cut(s)	127, 1166, 1217
AfaI	GTAC	4 cut(s)	289, 541, 644, 662
AfiI	CCNNNNNNNGG	2 cut(s)	22, 475
AgsI	TTSAA	8 cut(s)	31, 158, 166, 274, 298, 333, 694, 702
AjnI	CCWGG	3 cut(s)	15, 468, 941
AluBI	AGCT	5 cut(s)	120, 149, 277, 556, 569
AluI	AGCT	5 cut(s)	120, 149, 277, 556, 569
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	748, 794
AlwI	GGATC	2 cut(s)	375, 789
AlwNI	CAGNNNCTG	1 cut(s)	626
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	7 cut(s)	338, 998, 1030, 1055, 1057, 1085, 1203
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	5 cut(s)	155, 199, 339, 624, 913
AvaII	GGWCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	558
BccI	CCATC	2 cut(s)	530, 1100
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BciT130I	CCWGG	3 cut(s)	17, 470, 943
BcoDI	GTCTC	2 cut(s)	748, 794
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	9 cut(s)	45, 121, 252, 354, 618, 959, 1044, 1074, 1288
BfoI	RGCGCY	1 cut(s)	1204
BfuAI	ACCTGC	3 cut(s)	38, 358, 1081
Bme1390I	CCNGG	3 cut(s)	17, 470, 943
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	3 cut(s)	17, 470, 943
BmsI	GCATC	1 cut(s)	763
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	658
BsaHI	GRCGYC	3 cut(s)	127, 1166, 1217
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	5 cut(s)	15, 468, 469, 501, 941
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 475
Bse1I	ACTGG	2 cut(s)	709, 739
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	17, 470, 943
BseDI	CCNNGG	5 cut(s)	15, 468, 469, 501, 941
BseGI	GGATG	3 cut(s)	321, 915, 1092
BseLI	CCNNNNNNNGG	2 cut(s)	22, 475
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	805
BseNI	ACTGG	2 cut(s)	709, 739
BsePI	GCGCGC	1 cut(s)	1053
BseRI	GAGGAG	1 cut(s)	902
BseYI	CCCAGC	3 cut(s)	1004, 1058, 1113
BsgI	GTGCAG	3 cut(s)	423, 1143, 1179
Bsh1236I	CGCG	4 cut(s)	996, 1028, 1055, 1083
BsiHKAI	GWGCWC	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	22, 475
BsmAI	GTCTC	2 cut(s)	748, 794
BsmFI	GGGAC	1 cut(s)	486
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	367, 781
BspCNI	CTCAG	1 cut(s)	804
BspFNI	CGCG	4 cut(s)	996, 1028, 1055, 1083
BspLI	GGNNCC	1 cut(s)	467
BspMAI	CTGCAG	8 cut(s)	49, 125, 256, 358, 963, 1048, 1078, 1292
BspMI	ACCTGC	3 cut(s)	38, 358, 1081
BspPI	GGATC	2 cut(s)	375, 789
BspTNI	GGTCTC	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	709, 739
BssECI	CCNNGG	5 cut(s)	15, 468, 469, 501, 941
BssHII	GCGCGC	1 cut(s)	1053
BssMI	GATC	2 cut(s)	367, 781
BssNI	GRCGYC	3 cut(s)	127, 1166, 1217
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	3 cut(s)	17, 470, 943
Bst4CI	ACNGT	2 cut(s)	12, 598
BstACI	GRCGYC	3 cut(s)	127, 1166, 1217
BstAUI	TGTACA	1 cut(s)	660
BstDEI	CTNAG	2 cut(s)	278, 791
BstEII	GGTNACC	2 cut(s)	187, 606
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	321, 915, 1092
BstFNI	CGCG	4 cut(s)	996, 1028, 1055, 1083
BstH2I	RGCGCY	1 cut(s)	1204
BstHHI	GCGC	7 cut(s)	338, 998, 1030, 1055, 1057, 1085, 1203
BstKTI	GATC	2 cut(s)	370, 784
BstMAI	GTCTC	2 cut(s)	748, 794
BstMBI	GATC	2 cut(s)	367, 781
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 1052, 1059, 1082, 1109, 1123, 1154, 1157
BstNI	CCWGG	3 cut(s)	17, 470, 943
BstNSI	RCATGY	1 cut(s)	649
BstPI	GGTNACC	2 cut(s)	187, 606
BstSCI	CCNGG	3 cut(s)	15, 468, 941
BstSFI	CTRYAG	9 cut(s)	45, 121, 252, 354, 618, 959, 1044, 1074, 1288
BstUI	CGCG	4 cut(s)	996, 1028, 1055, 1083
BstV2I	GAAGAC	1 cut(s)	573
BtsCI	GGATG	3 cut(s)	321, 915, 1092
BveI	ACCTGC	3 cut(s)	38, 358, 1081
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	7 cut(s)	338, 998, 1030, 1055, 1057, 1085, 1203
Cfr13I	GGNCC	1 cut(s)	465
CseI	GACGC	5 cut(s)	135, 804, 1165, 1174, 1225
Csp6I	GTAC	4 cut(s)	288, 540, 643, 661
CviAII	CATG	3 cut(s)	291, 550, 646
CviQI	GTAC	4 cut(s)	288, 540, 643, 661
DdeI	CTNAG	2 cut(s)	278, 791
DpnI	GATC	2 cut(s)	369, 783
DpnII	GATC	2 cut(s)	367, 781
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	396, 956
Eco91I	GGTNACC	2 cut(s)	187, 606
EcoICRI	GAGCTC	1 cut(s)	556
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	465
EcoO65I	GGTNACC	2 cut(s)	187, 606
EcoRII	CCWGG	3 cut(s)	15, 468, 941
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	3 cut(s)	294, 553, 649
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	3 cut(s)	290, 549, 645
FauI	CCCGC	6 cut(s)	71, 936, 1088, 1214, 1234, 1280
FokI	GGATG	3 cut(s)	308, 902, 1079
FriOI	GRGCYC	1 cut(s)	558
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	7 cut(s)	337, 997, 1029, 1054, 1056, 1084, 1202
GsaI	CCCAGC	3 cut(s)	1008, 1062, 1117
GsuI	CTGGAG	1 cut(s)	658
HaeII	RGCGCY	1 cut(s)	1204
HgaI	GACGC	5 cut(s)	135, 804, 1165, 1174, 1225
HhaI	GCGC	7 cut(s)	338, 998, 1030, 1055, 1057, 1085, 1203
Hin1I	GRCGYC	3 cut(s)	127, 1166, 1217
Hin1II	CATG	3 cut(s)	294, 553, 649
Hin6I	GCGC	7 cut(s)	336, 996, 1028, 1053, 1055, 1083, 1201
HinP1I	GCGC	7 cut(s)	336, 996, 1028, 1053, 1055, 1083, 1201
HinfI	GANTC	5 cut(s)	31, 62, 517, 623, 809
HphI	GGTGA	5 cut(s)	155, 199, 339, 624, 913
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	4 cut(s)	67, 184, 376, 669
Hpy188III	TCNNGA	2 cut(s)	530, 675
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	3 cut(s)	655, 820, 1181
HpyAV	CCTTC	5 cut(s)	239, 371, 980, 1046, 1200
HpyCH4III	ACNGT	2 cut(s)	12, 598
HpyCH4IV	ACGT	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 1052, 1059, 1082, 1109, 1123, 1154, 1157
HpyF3I	CTNAG	2 cut(s)	278, 791
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	3 cut(s)	127, 1166, 1217
Hsp92II	CATG	3 cut(s)	294, 553, 649
HspAI	GCGC	7 cut(s)	336, 996, 1028, 1053, 1055, 1083, 1201
Kzo9I	GATC	2 cut(s)	367, 781
LmnI	GCTCC	4 cut(s)	117, 553, 805, 1288
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	3 cut(s)	187, 606, 630
MalI	GATC	2 cut(s)	369, 783
MboI	GATC	2 cut(s)	367, 781
MboII	GAAGA	5 cut(s)	254, 419, 545, 573, 750
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	4 cut(s)	39, 510, 575, 694
MlyI	GAGTC	2 cut(s)	71, 818
MseI	TTAA	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	931, 1229
MspR9I	CCNGG	3 cut(s)	17, 470, 943
MvaI	CCWGG	3 cut(s)	17, 470, 943
MvnI	CGCG	4 cut(s)	996, 1028, 1055, 1083
MwoI	GCNNNNNNNGC	8 cut(s)	126, 1052, 1059, 1082, 1109, 1123, 1154, 1157
NdeII	GATC	2 cut(s)	367, 781
NlaIII	CATG	3 cut(s)	294, 553, 649
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	2 cut(s)	187, 630
NspI	RCATGY	1 cut(s)	649
PaqCI	CACCTGC	3 cut(s)	38, 358, 1081
PasI	CCCWGGG	1 cut(s)	469
PauI	GCGCGC	1 cut(s)	1053
PfeI	GAWTC	3 cut(s)	31, 517, 623
PleI	GAGTC	2 cut(s)	70, 817
PpsI	GAGTC	2 cut(s)	70, 817
PpuMI	RGGWCCY	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	465
Psp6I	CCWGG	3 cut(s)	15, 468, 941
PspEI	GGTNACC	2 cut(s)	187, 606
PspFI	CCCAGC	3 cut(s)	1004, 1058, 1113
PspGI	CCWGG	3 cut(s)	15, 468, 941
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	465
PspPPI	RGGWCCY	1 cut(s)	465
PstI	CTGCAG	8 cut(s)	49, 125, 256, 358, 963, 1048, 1078, 1292
PstNI	CAGNNNCTG	1 cut(s)	626
PteI	GCGCGC	1 cut(s)	1053
RsaI	GTAC	4 cut(s)	289, 541, 644, 662
RsaNI	GTAC	4 cut(s)	288, 540, 643, 661
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	509
Sau3AI	GATC	2 cut(s)	367, 781
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	2 cut(s)	71, 818
ScrFI	CCNGG	3 cut(s)	17, 470, 943
SduI	GDGCHC	1 cut(s)	558
SfaNI	GCATC	1 cut(s)	763
SfcI	CTRYAG	9 cut(s)	45, 121, 252, 354, 618, 959, 1044, 1074, 1288
SinI	GGWCC	1 cut(s)	465
Sse9I	AATT	4 cut(s)	39, 510, 575, 694
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	3 cut(s)	15, 468, 941
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	12, 598
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	807
TasI	AATT	4 cut(s)	39, 510, 575, 694
TatI	WGTACW	2 cut(s)	287, 660
TauI	GCSGC	4 cut(s)	905, 1028, 1222, 1296
TfiI	GAWTC	3 cut(s)	31, 517, 623
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TseFI	GTSAC	2 cut(s)	187, 630
Tsp45I	GTSAC	2 cut(s)	187, 630
TspDTI	ATGAA	2 cut(s)	183, 432
TspGWI	ACGGA	2 cut(s)	668, 848
VpaK11BI	GGWCC	1 cut(s)	465
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	1 cut(s)	649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.