Rh4AG246600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000937
Physical Location & Seq
Forward (+)
55859089 .. 55860326
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG246600.1

Sequence Viewer

Length: 228 bp
ATGGCCGACCCGATCCTTTCTCTGTCTTCCAGCAACGTCTGGACATCGGGCCGGTGGGCTTCTCATAATCTCGGCGCGATGAAGCAGGGCCCGGTGTTCTTTGGGTCCAAATGGCTAGAGATGACTGTGATTTTCGAGTTATGTAGATCTCTTGGTTTCTTGATTAAATTCGTCCATGATGTTCGCAGGTGTTCTTCAAAGGTTGATGATGCCATGAGCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.44

Weight (kDa)

9.51

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AccII CGCG 1 cut(s) 77
AclWI GGATC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 167
AgsI TTSAA 1 cut(s) 198
AlwI GGATC 1 cut(s) 7
AoxI GGCC 3 cut(s) 3, 49, 88
ApaI GGGCCC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 4 cut(s) 49, 88, 89, 105
AsuC2I CCSGG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 18
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 177
BglII AGATCT 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 4 cut(s) 49, 88, 89, 105
BmiI GGNNCC 2 cut(s) 90, 106
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 5, 51, 90
BsiSI CCGG 2 cut(s) 52, 92
BsnI GGCC 3 cut(s) 5, 51, 90
Bsp120I GGGCCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 12, 146
BspANI GGCC 3 cut(s) 5, 51, 90
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 90, 106
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 2 cut(s) 12, 146
Bst4CI ACNGT 1 cut(s) 127
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 15, 149
BstMBI GATC 2 cut(s) 12, 146
BstSCI CCNGG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BsuRI GGCC 3 cut(s) 5, 51, 90
BtgZI GCGATG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 49, 88, 89, 105
CviAII CATG 2 cut(s) 176, 214
CviJI RGCY 5 cut(s) 5, 51, 59, 90, 115
CviKI_1 RGCY 5 cut(s) 5, 51, 59, 90, 115
DpnI GATC 2 cut(s) 14, 148
DpnII GATC 2 cut(s) 12, 146
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 2 cut(s) 179, 217
FaiI YATR 4 cut(s) 66, 142, 177, 215
FatI CATG 2 cut(s) 175, 213
FriOI GRGCYC 1 cut(s) 92
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 76
HaeIII GGCC 3 cut(s) 5, 51, 90
HapII CCGG 2 cut(s) 52, 92
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 179, 217
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HpaII CCGG 2 cut(s) 52, 92
Hpy188III TCNNGA 2 cut(s) 40, 160
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 179, 217
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 12, 146
LpnPI CCDG 6 cut(s) 25, 43, 65, 71, 105, 172
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 36
MalI GATC 2 cut(s) 14, 148
MboI GATC 2 cut(s) 12, 146
MboII GAAGA 2 cut(s) 18, 186
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 167
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 52, 92
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 77
NciI CCSGG 1 cut(s) 92
NdeII GATC 2 cut(s) 12, 146
NlaIII CATG 2 cut(s) 179, 217
NlaIV GGNNCC 2 cut(s) 90, 106
NmeAIII GCCGAG 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 90, 106
PspOMI GGGCCC 1 cut(s) 88
PspPI GGNCC 4 cut(s) 49, 88, 89, 105
PsuI RGATCY 1 cut(s) 146
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 12, 146
Sau96I GGNCC 4 cut(s) 49, 88, 89, 105
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 39, 191, 204
SfaNI GCATC 1 cut(s) 199
SinI GGWCC 1 cut(s) 105
Sse9I AATT 1 cut(s) 167
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 135
TasI AATT 1 cut(s) 167
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 167
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.