Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

49893719 .. 49920827

Gene Structure 27109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAAAAGAAAGTTAAAACGAAATAGCAAAACATGGTGGCTGTCAGCTAGCGATGAGATGACTATGAGCATGTCCGCTGAGCACAACAACTTTCCCCCCAGCCGGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTCCGAACCCGACTGCAGGGAAGGGAAAATTTCCCTCAAGTCTGCGTGACAACATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

82

Amino Acids

9.57

Weight (kDa)

9.75

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	36 - 73	2e-09	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 158
AcsI	RAATTY	2 cut(s)	138, 217
AfiI	CCNNNNNNNGG	4 cut(s)	102, 103, 104, 205
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	138, 217
AsuC2I	CCSGG	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	147
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	112
BmtI	GCTAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 103, 104, 205
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	4 cut(s)	102, 103, 104, 205
BseMII	CTCAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	4 cut(s)	102, 103, 104, 205
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	75, 158
BspCNI	CTCAG	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	207
BspOI	GCTAGC	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	49
CviAII	CATG	2 cut(s)	33, 70
CviJI	RGCY	5 cut(s)	40, 47, 102, 149, 188
CviKI_1	RGCY	5 cut(s)	40, 47, 102, 149, 188
DdeI	CTNAG	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	147
FaeI	CATG	2 cut(s)	36, 73
FaiI	YATR	4 cut(s)	34, 65, 71, 244
FatI	CATG	2 cut(s)	32, 69
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	1 cut(s)	102
HapII	CCGG	1 cut(s)	103
Hin1II	CATG	2 cut(s)	36, 73
HpaII	CCGG	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	114, 205
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	36, 73
LpnPI	CCDG	5 cut(s)	112, 116, 156, 174, 191
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	2 cut(s)	138, 217
MnlI	CCTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	14, 247
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	104
NciI	CCSGG	1 cut(s)	104
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	36, 73
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	14, 247
SatI	GCNGC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	138, 217
SsiI	CCGC	2 cut(s)	75, 158
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	2 cut(s)	138, 217
Tru1I	TTAA	2 cut(s)	14, 247
Tru9I	TTAA	2 cut(s)	14, 247
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	138, 217
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.