Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

16427266 .. 16468906

Gene Structure 41641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCAGTGGTATGTGACTGAGTTGAGCTCGAAGCTCAAATTCGCAATAGATCTTAGGCTTCAAGAGAATGACAGGTCACTGACTCGTTTTCCCGCGACCTGTGACCAGGATCTCTCTCCGTTCTCCGGCCGCTCCTTGGAGGCGGATTGGTGGCTTCGGGTAAGTGATGGTTATCTTGACAGGATATTCATGAGCCCAGCAGCTGTGAGGGCTGGAAATCTTATCCGCGAATGGATGGAGGATGCTGGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTAGGAATGCTAGTGCTGAGGCTCTACTACTTGGTTCTCATTTGGATACTGTTGTTGAGGCCAGGATATTTGATGGAACTAAAGAGGCCAGTTGAGGTAATAGCATTTAGTGATGAAGAAGGAGTAAAGTTTCAGTCTACATTCATAGGAAGTGCTGCTATAGCTGGAATTTTACCAGTTTCAGCACTGCAAATAACTGATAAAAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATAGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGATTCAAAATCAGTTTGGGTTATGTTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTTGGAGTTGTTAAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

221

Amino Acids

25.42

Weight (kDa)

5.36

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	2 cut(s)	95, 228
AciI	CCGC	4 cut(s)	93, 130, 143, 226
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	38, 456
AfaI	GTAC	2 cut(s)	272, 623
AfiI	CCNNNNNNNGG	2 cut(s)	125, 136
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	62, 509, 576, 610
AjnI	CCWGG	2 cut(s)	105, 349
AluBI	AGCT	5 cut(s)	27, 34, 203, 452, 562
AluI	AGCT	5 cut(s)	27, 34, 203, 452, 562
Alw21I	GWGCWC	2 cut(s)	29, 552
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	127, 347, 374, 616
ApeKI	GCWGC	4 cut(s)	200, 443, 556, 559
ApoI	RAATTY	2 cut(s)	38, 456
AspS9I	GGNCC	1 cut(s)	616
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BanII	GRGCYC	2 cut(s)	29, 197
Bbv12I	GWGCWC	2 cut(s)	29, 552
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	212, 430, 568, 571
BccI	CCATC	3 cut(s)	161, 229, 355
BciT130I	CCWGG	2 cut(s)	107, 351
BciVI	GTATCC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	5 cut(s)	130, 201, 444, 557, 560
BlsI	GCNGC	5 cut(s)	131, 202, 445, 558, 561
Bme1390I	CCNGG	2 cut(s)	107, 351
BmgT120I	GGNCC	1 cut(s)	616
BmrFI	CCNGG	2 cut(s)	107, 351
BmsI	GCATC	2 cut(s)	232, 502
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
Bpu10I	CCTNAGC	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 136
Bse1I	ACTGG	3 cut(s)	377, 464, 629
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	107, 351
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	240, 247
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	125, 136
BseMII	CTCAG	3 cut(s)	9, 296, 577
BseNI	ACTGG	3 cut(s)	377, 464, 629
BseRI	GAGGAG	1 cut(s)	560
BseX3I	CGGCCG	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	212, 430, 568, 571
BseYI	CCCAGC	1 cut(s)	196
Bsh1236I	CGCG	2 cut(s)	95, 228
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	4 cut(s)	129, 349, 376, 618
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	29, 552
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	125, 136
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	4 cut(s)	129, 349, 376, 618
Bsp1286I	GDGCHC	3 cut(s)	29, 197, 552
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	49, 109
BspACI	CCGC	4 cut(s)	93, 130, 143, 226
BspANI	GGCC	4 cut(s)	129, 349, 376, 618
BspCNI	CTCAG	3 cut(s)	10, 297, 576
BspFNI	CGCG	2 cut(s)	95, 228
BspHI	TCATGA	1 cut(s)	189
BspPI	GGATC	1 cut(s)	117
BspTI	CTTAAG	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	377, 464, 629
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	49, 109
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	107, 351
Bst4CI	ACNGT	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	18, 53, 305, 563
BstF5I	GGATG	2 cut(s)	240, 247
BstFNI	CGCG	2 cut(s)	95, 228
BstKTI	GATC	2 cut(s)	52, 112
BstMBI	GATC	2 cut(s)	49, 109
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 449, 556
BstNI	CCWGG	2 cut(s)	107, 351
BstSCI	CCNGG	2 cut(s)	105, 349
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	2 cut(s)	95, 228
BstV1I	GCAGC	4 cut(s)	212, 430, 568, 571
BstX2I	RGATCY	2 cut(s)	49, 109
BstYI	RGATCY	2 cut(s)	49, 109
BstZI	CGGCCG	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	129, 349, 376, 618
BtsCI	GGATG	2 cut(s)	240, 247
BtsI	GCAGTG	2 cut(s)	11, 473
BtsIMutI	CAGTG	3 cut(s)	11, 77, 473
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	271, 622
CviAII	CATG	2 cut(s)	190, 274
CviQI	GTAC	2 cut(s)	271, 622
DdeI	CTNAG	4 cut(s)	18, 53, 305, 563
DpnI	GATC	2 cut(s)	51, 111
DpnII	GATC	2 cut(s)	49, 109
EaeI	YGGCCR	1 cut(s)	127
EagI	CGGCCG	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	29, 197
Eco52I	CGGCCG	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	105, 349
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	29, 197
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	193, 277
FaiI	YATR	9 cut(s)	12, 191, 275, 434, 449, 533, 570, 593, 664
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FatI	CATG	2 cut(s)	189, 273
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	5 cut(s)	130, 201, 444, 557, 560
FokI	GGATG	2 cut(s)	247, 254
FriOI	GRGCYC	2 cut(s)	29, 197
Fsp4HI	GCNGC	5 cut(s)	130, 201, 444, 557, 560
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	5 cut(s)	130, 201, 444, 557, 560
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	129, 349, 376, 618
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	193, 277
HinfI	GANTC	3 cut(s)	82, 572, 600
HpaII	CCGG	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	1 cut(s)	566
Hpy188III	TCNNGA	4 cut(s)	62, 176, 190, 509
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	4, 478, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 449, 556
HpyF3I	CTNAG	4 cut(s)	18, 53, 305, 563
Hsp92II	CATG	2 cut(s)	193, 277
Kzo9I	GATC	2 cut(s)	49, 109
LmnI	GCTCC	2 cut(s)	137, 547
Lsp1109I	GCAGC	4 cut(s)	212, 430, 568, 571
LweI	GCATC	2 cut(s)	232, 502
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	5 cut(s)	13, 75, 101, 499, 538
MalI	GATC	2 cut(s)	51, 111
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	2 cut(s)	49, 109
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	2 cut(s)	49, 109
MhlI	GDGCHC	3 cut(s)	29, 197, 552
MluCI	AATT	3 cut(s)	38, 456, 504
MlyI	GAGTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	519, 656
MspA1I	CMGCKG	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	107, 351
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	2 cut(s)	107, 351
MvnI	CGCG	2 cut(s)	95, 228
MwoI	GCNNNNNNNGC	3 cut(s)	209, 449, 556
NdeII	GATC	2 cut(s)	49, 109
NlaIII	CATG	2 cut(s)	193, 277
NmuCI	GTSAC	4 cut(s)	13, 75, 101, 499
PagI	TCATGA	1 cut(s)	189
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	572, 600
PkrI	GCNGC	5 cut(s)	131, 202, 445, 558, 561
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	105, 349
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	2 cut(s)	105, 349
PspPI	GGNCC	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	49, 109
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	272, 623
RsaNI	GTAC	2 cut(s)	271, 622
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	519, 656
SatI	GCNGC	5 cut(s)	130, 201, 444, 557, 560
Sau3AI	GATC	2 cut(s)	49, 109
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	107, 351
SduI	GDGCHC	3 cut(s)	29, 197, 552
SetI	ASST	8 cut(s)	29, 36, 77, 101, 205, 387, 454, 564
SfaNI	GCATC	2 cut(s)	232, 502
SfcI	CTRYAG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	38, 456, 504
SsiI	CCGC	4 cut(s)	93, 130, 143, 226
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	105, 349
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	29, 279
TasI	AATT	3 cut(s)	38, 456, 504
TatI	WGTACW	2 cut(s)	270, 621
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	572, 600
Tru1I	TTAA	2 cut(s)	519, 656
Tru9I	TTAA	2 cut(s)	519, 656
TscAI	CASTG	2 cut(s)	84, 480
TseFI	GTSAC	4 cut(s)	13, 75, 101, 499
TseI	GCWGC	4 cut(s)	200, 443, 556, 559
Tsp45I	GTSAC	4 cut(s)	13, 75, 101, 499
TspDTI	ATGAA	3 cut(s)	178, 417, 421
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	2 cut(s)	84, 480
Vha464I	CTTAAG	1 cut(s)	518
XapI	RAATTY	2 cut(s)	38, 456
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.