Rh1BG260100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
39149385 .. 39151252
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG260100.1

Sequence Viewer

Length: 594 bp
ATGGCAGCAAAACCTGGAAAGACAAAGATTATGAGACTTCTACGAGATGATAATACAGAAGATCAAGATACTCAAAGACAGGCAGAGAGAATTGATATGGACACACATTCTCAGATTATATCAAGAAAGCGGAAACAAGGTTGTCAAAGAAAATCAAGAAGGTTGAAAGAAGCATCTCAGCCTATGTTGATCGAACAGAACCAAAGTTTGTGCAGCAGTGATCAAAATGTCAATATATTTGGCTACTGTGACAGACAAATTACAAATGATCAAGGAGATTCTGCCATGATTGTAAATGAGGCTCTGTTTCCTCATCAAAATTCAAATATTGACAATACAACTTCGATGGGTTGTCAAAGAAAATCAAGAAGGTTGAAAGAAGCATCTCAGCCTATGTTGATCGAACAGAACCAAAGTTTGTGCAGCAGTGATCAAAATGTCAATATATTTGACTACCGTGACAGACAAATTACAAATGATCAAGGACATTCTGCCATGATTGTAAATGAGGCTCTGTTTCCTCATCAAAATTCAAATACCTGCGACTATGAATTCAAATATAAACTGAGGGTGAAGACCTGCGAGTCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.77

Weight (kDa)

8.15

Isoelectric Point (pI)

46.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
Acc36I ACCTGC 2 cut(s) 548, 587
AciI CCGC 1 cut(s) 130
AcsI RAATTY 3 cut(s) 319, 529, 551
AgsI TTSAA 5 cut(s) 166, 324, 376, 534, 556
AjnI CCWGG 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 5, 213, 423
ApoI RAATTY 3 cut(s) 319, 529, 551
AsuHPI GGTGA 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 581
BbvI GCAGC 3 cut(s) 17, 225, 435
BccI CCATC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 4 cut(s) 220, 268, 430, 478
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 592
BfuAI ACCTGC 2 cut(s) 548, 587
BisI GCNGC 3 cut(s) 6, 214, 424
BlsI GCNGC 3 cut(s) 7, 215, 425
Bme1390I CCNGG 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 2 cut(s) 182, 392
BpiI GAAGAC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 15
BseMII CTCAG 4 cut(s) 125, 191, 401, 557
BseXI GCAGC 3 cut(s) 17, 225, 435
BsgI GTGCAG 2 cut(s) 232, 442
BsmAI GTCTC 1 cut(s) 28
Bsp143I GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
BspACI CCGC 1 cut(s) 130
BspCNI CTCAG 4 cut(s) 124, 190, 400, 558
BspMI ACCTGC 2 cut(s) 548, 587
BssMI GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 248, 458
BstDEI CTNAG 4 cut(s) 111, 177, 387, 566
BstKTI GATC 7 cut(s) 64, 192, 223, 271, 402, 433, 481
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 17, 225, 435
BstV2I GAAGAC 1 cut(s) 581
BtsI GCAGTG 2 cut(s) 223, 433
BtsIMutI CAGTG 2 cut(s) 223, 433
BveI ACCTGC 2 cut(s) 548, 587
CviAII CATG 2 cut(s) 286, 496
CviJI RGCY 5 cut(s) 181, 243, 302, 391, 512
CviKI_1 RGCY 5 cut(s) 181, 243, 302, 391, 512
DdeI CTNAG 4 cut(s) 111, 177, 387, 566
DpnI GATC 7 cut(s) 63, 191, 222, 270, 401, 432, 480
DpnII GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 289, 499
FatI CATG 2 cut(s) 285, 495
FbaI TGATCA 4 cut(s) 220, 268, 430, 478
Fnu4HI GCNGC 3 cut(s) 6, 214, 424
Fsp4HI GCNGC 3 cut(s) 6, 214, 424
FspBI CTAG 1 cut(s) 592
GluI GCNGC 3 cut(s) 6, 214, 424
Hin1II CATG 2 cut(s) 289, 499
HinfI GANTC 2 cut(s) 278, 584
HphI GGTGA 1 cut(s) 583
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 4 cut(s) 65, 123, 156, 366
HpyAV CCTTC 2 cut(s) 153, 363
HpyCH4III ACNGT 2 cut(s) 248, 458
HpyCH4V TGCA 2 cut(s) 213, 423
HpyF3I CTNAG 4 cut(s) 111, 177, 387, 566
Hsp92II CATG 2 cut(s) 289, 499
Ksp22I TGATCA 4 cut(s) 220, 268, 430, 478
Kzo9I GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
LpnPI CCDG 3 cut(s) 27, 65, 553
Lsp1109I GCAGC 3 cut(s) 17, 225, 435
LweI GCATC 2 cut(s) 182, 392
MaeI CTAG 1 cut(s) 592
MaeIII GTNAC 2 cut(s) 248, 458
MalI GATC 7 cut(s) 63, 191, 222, 270, 401, 432, 480
MboI GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
MboII GAAGA 2 cut(s) 71, 586
MluCI AATT 6 cut(s) 90, 258, 319, 468, 529, 551
MlyI GAGTC 1 cut(s) 593
MnlI CCTC 5 cut(s) 292, 321, 502, 531, 561
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
NdeII GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
NlaIII CATG 2 cut(s) 289, 499
NmuCI GTSAC 2 cut(s) 248, 458
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 7, 215, 425
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
SatI GCNGC 3 cut(s) 6, 214, 424
Sau3AI GATC 7 cut(s) 61, 189, 220, 268, 399, 430, 478
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 15
SetI ASST 6 cut(s) 16, 142, 164, 374, 542, 581
SfaNI GCATC 2 cut(s) 182, 392
Sse9I AATT 6 cut(s) 90, 258, 319, 468, 529, 551
SsiI CCGC 1 cut(s) 130
SspI AATATT 1 cut(s) 328
SspMI CTAG 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 2 cut(s) 248, 458
TaqI TCGA 3 cut(s) 192, 344, 402
TasI AATT 6 cut(s) 90, 258, 319, 468, 529, 551
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 2 cut(s) 223, 433
TseFI GTSAC 2 cut(s) 248, 458
TseI GCWGC 3 cut(s) 5, 213, 423
Tsp45I GTSAC 2 cut(s) 248, 458
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 2 cut(s) 223, 433
XapI RAATTY 3 cut(s) 319, 529, 551
XspI CTAG 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.