Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8071990.1

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 548

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8071990.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

gtaagtgatggtgatggctatcttgagaggatattcatgagcccgggggctgtgagggcaggaaatctaatccgcgaatggatggagaatgcgggtttgcgaacgtgggttgattgcttgggaaatatacatggtcgagttgagggaaggaatgctagtgctgaagctctgttaattggttcccatttggtgatgttcttttcctccaaattccgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006144 GO:0006145 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0010135 GO:0010136 GO:0012505 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019439 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0047652 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

73

Amino Acids

8.15

Weight (kDa)

6.9

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 92
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	183
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	209
AsuC2I	CCSGG	2 cut(s)	44, 45
AsuHPI	GGTGA	2 cut(s)	23, 202
AvaI	CYCGRG	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	44
BccI	CCATC	3 cut(s)	2, 8, 76
BcnI	CCSGG	2 cut(s)	44, 45
BfaI	CTAG	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	44, 45
BmeT110I	CYCGRG	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	44, 45
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	44, 45
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	43, 44
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	43, 44
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	44
BsmI	GAATGC	2 cut(s)	94, 157
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	73, 92
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	43, 44
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	42, 43
BstUI	CGCG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	36
Cfr9I	CCCGGG	1 cut(s)	43
CviAII	CATG	2 cut(s)	37, 131
CviJI	RGCY	4 cut(s)	18, 42, 50, 167
CviKI_1	RGCY	4 cut(s)	18, 42, 50, 167
Eco24I	GRGCYC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	2 cut(s)	40, 134
FaiI	YATR	3 cut(s)	38, 128, 132
FatI	CATG	2 cut(s)	36, 130
FauI	CCCGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	156
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	40, 134
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	23, 202
Hpy188III	TCNNGA	2 cut(s)	23, 37
HpyAV	CCTTC	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	40, 134
LpnPI	CCDG	2 cut(s)	45, 57
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	2 cut(s)	174, 209
MnlI	CCTC	4 cut(s)	21, 48, 136, 214
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	44, 45
Mva1269I	GAATGC	2 cut(s)	94, 157
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	56
NciI	CCSGG	2 cut(s)	44, 45
NlaIII	CATG	2 cut(s)	40, 134
NlaIV	GGNNCC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	36
PctI	GAATGC	2 cut(s)	94, 157
PspN4I	GGNNCC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	44, 45
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	2 cut(s)	107, 169
SmaI	CCCGGG	1 cut(s)	45
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	174, 209
SsiI	CCGC	2 cut(s)	73, 92
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	42, 43
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	174, 209
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	203
TspMI	CCCGGG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	209
XmaI	CCCGGG	1 cut(s)	43
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.