Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

50158348 .. 50161519

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0326700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTTTCATATGACACGAATTGTGGTACGCCAACATGGATCGGGAAGGGGCTTACTTGTGTTTGCTTCAAGGCAAAGGGAAATTATGAAAGGGTCTGCTTGAATCTGACACCCCTGCAGGAGGAAAGGATGAGAAGGTTGCAGCGCCGGATGAAGATTTACTTTGATTCTTCTAGGCCAGATCACCAGGAAGCGCTGAGAGCTCTATGGTATGCTACATATCCCGGTCAAGAGCTTCATGGCTTGGTATCTGATCAGTGGAAAGAGATGGGATGGCAGGGAAGAGATCCATCCACTGATTTCAGAGGTGCTGGATTTATTTCTTTGGAGAACCTCTTGTTCTTCGCAAAGACATTTTCGACATCTTTCCAGTGCCTATTGAACAAGCAAGGAGGAAAGCCAGCTGCTTGGGAATATCCATTTGCTGTTGCCGGTGTAAATATTACATTTATGATCATGCAAATGCTTGACCTCGAAGCCACGAAACCAAGGTCCTTTATCAGGGCAGTTTTCTTACAGATGTTGTTAGAAAGCGAGTGGGCTTTTGACTTGCTCTATTGCGTCGCCTTCATGGTTATGGATAAACAGTGGCTTGAGAGAAATGCTACATACATGGAATTCAATGATGTTTTGAAATCAACTCGAGCTCAATTGGAGAGGGAATTACTAATGGACGATGTCTTGCGGATTGAAGACATGCCTTCTTACAGCCTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008308 GO:0008509 GO:0009526 GO:0009527 GO:0009536 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0034220 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

240

Amino Acids

28.0

Weight (kDa)

5.82

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	46 - 211	1.6e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	2 cut(s)	47, 281
AcsI	RAATTY	1 cut(s)	617
AfaI	GTAC	1 cut(s)	28
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	121, 501
AgsI	TTSAA	6 cut(s)	70, 103, 382, 622, 634, 692
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	4 cut(s)	203, 235, 404, 647
AluI	AGCT	4 cut(s)	203, 235, 404, 647
Alw21I	GWGCWC	2 cut(s)	205, 649
AlwI	GGATC	2 cut(s)	47, 281
Ama87I	CYCGRG	1 cut(s)	642
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	142, 404
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	2 cut(s)	147, 196
AspS9I	GGNCC	1 cut(s)	492
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	642
AvaII	GGWCC	1 cut(s)	492
BanII	GRGCYC	2 cut(s)	205, 649
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	2 cut(s)	205, 649
BbvI	GCAGC	2 cut(s)	154, 391
BccI	CCATC	3 cut(s)	262, 267, 298
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	2 cut(s)	253, 453
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	116
BfoI	RGCGCY	2 cut(s)	148, 197
BisI	GCNGC	2 cut(s)	143, 405
BlsI	GCNGC	2 cut(s)	144, 406
Bme1390I	CCNGG	2 cut(s)	188, 225
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	188, 225
BpiI	GAAGAC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 501
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	4 cut(s)	135, 156, 278, 290
BseLI	CCNNNNNNNGG	2 cut(s)	121, 501
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	154, 391
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	205, 649
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	3 cut(s)	148, 225, 432
BslI	CCNNNNNNNGG	2 cut(s)	121, 501
BsnI	GGCC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	642
Bsp1286I	GDGCHC	2 cut(s)	205, 649
Bsp143I	GATC	5 cut(s)	39, 181, 253, 286, 453
BspACI	CCGC	1 cut(s)	685
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	120
BspPI	GGATC	2 cut(s)	47, 281
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	5 cut(s)	39, 181, 253, 286, 453
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	197
BstENI	CCTNNNNNAGG	2 cut(s)	119, 499
BstF5I	GGATG	4 cut(s)	135, 156, 278, 290
BstH2I	RGCGCY	2 cut(s)	148, 197
BstHHI	GCGC	2 cut(s)	147, 196
BstKTI	GATC	5 cut(s)	42, 184, 256, 289, 456
BstMBI	GATC	5 cut(s)	39, 181, 253, 286, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	186, 223
BstSFI	CTRYAG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	154, 391
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	135, 156, 278, 290
BtsIMutI	CAGTG	4 cut(s)	263, 294, 377, 593
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	2 cut(s)	147, 196
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	492
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	6 cut(s)	36, 239, 457, 571, 613, 697
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	5 cut(s)	41, 183, 255, 288, 455
DpnII	GATC	5 cut(s)	39, 181, 253, 286, 453
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Ecl136II	GAGCTC	2 cut(s)	203, 647
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	205, 649
Eco47I	GGWCC	1 cut(s)	492
Eco47III	AGCGCT	1 cut(s)	195
Eco53kI	GAGCTC	2 cut(s)	203, 647
Eco88I	CYCGRG	1 cut(s)	642
EcoICRI	GAGCTC	2 cut(s)	203, 647
EcoNI	CCTNNNNNAGG	2 cut(s)	119, 499
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	2 cut(s)	205, 649
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	6 cut(s)	35, 238, 456, 570, 612, 696
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	2 cut(s)	253, 453
Fnu4HI	GCNGC	2 cut(s)	143, 405
FokI	GGATG	4 cut(s)	142, 163, 277, 285
FriOI	GRGCYC	2 cut(s)	205, 649
Fsp4HI	GCNGC	2 cut(s)	143, 405
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	2 cut(s)	146, 195
GluI	GCNGC	2 cut(s)	143, 405
HaeII	RGCGCY	2 cut(s)	148, 197
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	3 cut(s)	148, 225, 432
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	2 cut(s)	147, 196
Hin1II	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
Hin6I	GCGC	2 cut(s)	145, 194
HinP1I	GCGC	2 cut(s)	145, 194
HinfI	GANTC	2 cut(s)	103, 167
HpaII	CCGG	3 cut(s)	148, 225, 432
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	3 cut(s)	108, 253, 305
Hpy188III	TCNNGA	2 cut(s)	43, 230
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	5 cut(s)	40, 129, 577, 711, 722
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4V	TGCA	3 cut(s)	118, 142, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
HspAI	GCGC	2 cut(s)	145, 194
Ksp22I	TGATCA	2 cut(s)	253, 453
Kzo9I	GATC	5 cut(s)	39, 181, 253, 286, 453
Lsp1109I	GCAGC	2 cut(s)	154, 391
MaeI	CTAG	1 cut(s)	174
MalI	GATC	5 cut(s)	41, 183, 255, 288, 455
MboI	GATC	5 cut(s)	39, 181, 253, 286, 453
MboII	GAAGA	5 cut(s)	162, 166, 294, 334, 704
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	205, 649
MluCI	AATT	5 cut(s)	19, 82, 617, 650, 662
MnlI	CCTC	6 cut(s)	115, 299, 344, 386, 482, 651
MslI	CAYNNNNRTG	2 cut(s)	461, 575
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	148, 225, 432
MspR9I	CCNGG	2 cut(s)	188, 225
MunI	CAATTG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	225
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	5 cut(s)	39, 181, 253, 286, 453
NlaIII	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
NspI	RCATGY	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	103, 167
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	144, 406
PpuMI	RGGWCCY	1 cut(s)	492
Psp124BI	GAGCTC	2 cut(s)	205, 649
Psp5II	RGGWCCY	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	492
PspPPI	RGGWCCY	1 cut(s)	492
PspXI	VCTCGAGB	1 cut(s)	642
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	2 cut(s)	461, 575
SacI	GAGCTC	2 cut(s)	205, 649
SatI	GCNGC	2 cut(s)	143, 405
Sau3AI	GATC	5 cut(s)	39, 181, 253, 286, 453
Sau96I	GGNCC	1 cut(s)	492
SbfI	CCTGCAGG	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	188, 225
SdaI	CCTGCAGG	1 cut(s)	120
SduI	GDGCHC	2 cut(s)	205, 649
SetI	ASST	9 cut(s)	140, 205, 237, 310, 336, 406, 474, 494, 649
SfcI	CTRYAG	1 cut(s)	116
Sfr274I	CTCGAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	492
SlaI	CTCGAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	2 cut(s)	461, 575
SmlI	CTYRAG	2 cut(s)	593, 642
SmoI	CTYRAG	2 cut(s)	593, 642
Sse8387I	CCTGCAGG	1 cut(s)	120
Sse9I	AATT	5 cut(s)	19, 82, 617, 650, 662
SsiI	CCGC	1 cut(s)	685
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	2 cut(s)	205, 649
StyD4I	CCNGG	2 cut(s)	186, 223
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	359, 474, 643
TasI	AATT	5 cut(s)	19, 82, 617, 650, 662
TfiI	GAWTC	2 cut(s)	103, 167
TscAI	CASTG	4 cut(s)	263, 301, 377, 593
TseI	GCWGC	2 cut(s)	142, 404
TspDTI	ATGAA	4 cut(s)	102, 167, 227, 559
TspRI	CASTG	4 cut(s)	263, 301, 377, 593
Tth111I	GACNNNGTC	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	492
XagI	CCTNNNNNAGG	2 cut(s)	119, 499
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	642
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.