Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

66004323 .. 66007694

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030692

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGCTCAAAGATAAAGCTGCTGAATTGTCTTCACTAGGTTTTACTGTGATTTGGTTACCACCCCCTACAGATTCTGTGTCGCCTGAATGGTACATGCTGACGGATTTGTATAATCTGAACTCCAGTGCATTGGTATCAGGTCTCAGTTCTCAGTTATGCTCCATTCGAGTCATCGTCGCAGAAATACTTGACGGACAATGGGAGTGTCTTTATGACCAAGGTGGGATTTCATGGGTTGAAAACAAGAGGGAAAGAGAGGGTTTGGAGGGATTTATTAGTAAAAAGGAAAGTGATGGTGAAGAGGTCAATGTTGAGAAGGTTGTTGACCCATCCACTGGAGTACAAGAAAGTGTACTGGTCGAAATGATTTCTCTCTTGAATATATTCCTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

133

Amino Acids

14.68

Weight (kDa)

4.26

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AfaI	GTAC	3 cut(s)	95, 345, 357
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	242, 382
AluBI	AGCT	2 cut(s)	7, 20
AluI	AGCT	2 cut(s)	7, 20
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	290, 340
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	109, 360
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	126, 343, 363
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	160, 167
BseNI	ACTGG	3 cut(s)	126, 343, 363
BseXI	GCAGC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	159, 166
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	126, 343, 363
BssECI	CCNNGG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	146, 153
BstEII	GGTNACC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	133, 336
CaiI	CAGNNNCTG	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	94, 344, 356
CviAII	CATG	2 cut(s)	97, 234
CviJI	RGCY	2 cut(s)	7, 20
CviKI_1	RGCY	2 cut(s)	7, 20
CviQI	GTAC	3 cut(s)	94, 344, 356
DdeI	CTNAG	2 cut(s)	146, 153
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	100, 237
FaiI	YATR	6 cut(s)	98, 114, 160, 216, 235, 386
FatI	CATG	2 cut(s)	96, 233
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	109, 360
Hin1II	CATG	2 cut(s)	100, 237
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	74, 171
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	328, 356
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	328, 356
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	146, 153
Hsp92II	CATG	2 cut(s)	100, 237
LmnI	GCTCC	2 cut(s)	4, 167
LpnPI	CCDG	5 cut(s)	99, 126, 139, 324, 344
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	57
MboII	GAAGA	2 cut(s)	24, 314
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	243, 253, 262, 298
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	1 cut(s)	393
NlaIII	CATG	2 cut(s)	100, 237
NspI	RCATGY	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	57
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	95, 345, 357
RsaNI	GTAC	3 cut(s)	94, 344, 356
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	9, 22, 43, 145, 226, 309, 324
SfcI	CTRYAG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	2 cut(s)	169, 363
TasI	AATT	1 cut(s)	26
TatI	WGTACW	2 cut(s)	343, 355
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	133, 343
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	119, 210
TspRI	CASTG	2 cut(s)	133, 343
Van91I	CCANNNNNTGG	1 cut(s)	338
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.