Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

30269929 .. 30273532

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG292400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCAGATTTAGAAGATCATAATTCAGGAGGTCAACGTACTAAAAAAAAAACGCAGAGAATGCCTTATGATCAAACTTCTGCTGCTGTTTCTGATATGAACACACATTGTGAAATTAGATCAAGAAAACAGAGACCAGATTGTCAAAGAAGATCAACAAGGTGGAAAGAAGGGGACGAGATGCCCCATGCGGCGGTGGTCGGAACCTGGTGGGGGAGGAGGGTCGAAGGAGTCCTGGTTGGGAAGCTTTGCTCTCCAGATGGTGACAGTTTTCTTCGGCGGCGGCACAAGGTGTCGACAACAGTGGGAACTGTTGCTGGTTTGTGGATGATGGTGCTGTACAACGTTGGGATGACGATGATGATTGGCCCGATATCGGCGGCGTACGACCGGAGGGGGCTGCCTTGGCTCCTTGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.79

Weight (kDa)

9.87

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	5 cut(s)	191, 194, 280, 283, 380
AclI	AACGTT	1 cut(s)	345
AdeI	CACNNNGTG	2 cut(s)	110, 292
AfaI	GTAC	3 cut(s)	40, 341, 386
AfiI	CCNNNNNNNGG	3 cut(s)	193, 213, 376
AjnI	CCWGG	2 cut(s)	206, 234
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	83, 400
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	70, 387
BccI	CCATC	2 cut(s)	254, 325
BciT130I	CCWGG	2 cut(s)	208, 236
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	127
BisI	GCNGC	6 cut(s)	84, 192, 281, 284, 381, 401
BlsI	GCNGC	6 cut(s)	85, 193, 282, 285, 382, 402
Bme1390I	CCNGG	2 cut(s)	208, 236
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	205, 410
BmrFI	CCNGG	2 cut(s)	208, 236
BmsI	GCATC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 213, 376
BseBI	CCWGG	2 cut(s)	208, 236
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	2 cut(s)	333, 357
BseLI	CCNNNNNNNGG	3 cut(s)	193, 213, 376
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	70, 387
BseYI	CCCAGC	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	391
BsiWI	CGTACG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	193, 213, 376
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	127
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	16, 70, 119, 152
BspACI	CCGC	5 cut(s)	191, 194, 280, 283, 380
BspANI	GGCC	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	205, 410
BspTNI	GGTCTC	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	4 cut(s)	16, 70, 119, 152
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	208, 236
Bst4CI	ACNGT	3 cut(s)	269, 304, 313
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	333, 357
BstKTI	GATC	4 cut(s)	19, 73, 122, 155
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	4 cut(s)	16, 70, 119, 152
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 406
BstNI	CCWGG	2 cut(s)	208, 236
BstSCI	CCNGG	2 cut(s)	206, 234
BstV1I	GCAGC	2 cut(s)	70, 387
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	333, 357
BtsIMutI	CAGTG	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	368
CsiI	ACCWGGT	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	39, 340, 385
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	4 cut(s)	247, 369, 400, 409
CviKI_1	RGCY	4 cut(s)	247, 369, 400, 409
CviQI	GTAC	3 cut(s)	39, 340, 385
DpnI	GATC	4 cut(s)	18, 72, 121, 154
DpnII	GATC	4 cut(s)	16, 70, 119, 152
DraIII	CACNNNGTG	2 cut(s)	110, 292
DrdI	GACNNNNNNGTC	1 cut(s)	141
DseDI	GACNNNNNNGTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	127
Eco32I	GATATC	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	206, 234
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	1 cut(s)	191
FaiI	YATR	4 cut(s)	21, 69, 98, 189
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	6 cut(s)	84, 192, 281, 284, 381, 401
FokI	GGATG	2 cut(s)	340, 364
Fsp4HI	GCNGC	6 cut(s)	84, 192, 281, 284, 381, 401
GluI	GCNGC	6 cut(s)	84, 192, 281, 284, 381, 401
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	1 cut(s)	191
HincII	GTYRAC	2 cut(s)	35, 297
HindII	GTYRAC	2 cut(s)	35, 297
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	35, 297
Hpy188I	TCNGA	2 cut(s)	94, 203
Hpy188III	TCNNGA	3 cut(s)	27, 123, 257
Hpy8I	GTNNAC	2 cut(s)	35, 297
HpyAV	CCTTC	2 cut(s)	164, 221
HpyCH4III	ACNGT	3 cut(s)	269, 304, 313
HpyCH4IV	ACGT	2 cut(s)	37, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 406
HpySE526I	ACGT	2 cut(s)	37, 345
Hsp92II	CATG	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	16, 70, 119, 152
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	2 cut(s)	70, 387
LweI	GCATC	1 cut(s)	171
MabI	ACCWGGT	1 cut(s)	206
MaeII	ACGT	2 cut(s)	37, 345
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	18, 72, 121, 154
MboI	GATC	4 cut(s)	16, 70, 119, 152
MboII	GAAGA	3 cut(s)	26, 162, 266
MluCI	AATT	2 cut(s)	22, 114
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	23, 210, 213, 387
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	2 cut(s)	208, 236
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	2 cut(s)	208, 236
MwoI	GCNNNNNNNGC	2 cut(s)	61, 406
NdeII	GATC	4 cut(s)	16, 70, 119, 152
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	2 cut(s)	205, 410
NmuCI	GTSAC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	66
Pfl23II	CGTACG	1 cut(s)	384
PkrI	GCNGC	6 cut(s)	85, 193, 282, 285, 382, 402
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	206, 234
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	206, 234
PspLI	CGTACG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	205, 410
PspPI	GGNCC	1 cut(s)	368
RsaI	GTAC	3 cut(s)	40, 341, 386
RsaNI	GTAC	3 cut(s)	39, 340, 385
SalI	GTCGAC	1 cut(s)	295
SatI	GCNGC	6 cut(s)	84, 192, 281, 284, 381, 401
Sau3AI	GATC	4 cut(s)	16, 70, 119, 152
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	208, 236
SetI	ASST	7 cut(s)	34, 40, 164, 209, 249, 294, 348
SexAI	ACCWGGT	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	171
Sse9I	AATT	2 cut(s)	22, 114
SsiI	CCGC	5 cut(s)	191, 194, 280, 283, 380
StyD4I	CCNGG	2 cut(s)	206, 234
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	269, 304, 313
TaiI	ACGT	2 cut(s)	40, 348
TaqI	TCGA	2 cut(s)	225, 296
TasI	AATT	2 cut(s)	22, 114
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	4 cut(s)	194, 283, 286, 383
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	2 cut(s)	83, 400
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.