Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

54733445 .. 54736894

Gene Structure 3450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAATCCAGAGGAACTAAAGAGGAAACGAGATTTACCTGATCATGTTGTTGTTCACTGGGGAGTTTGCAAAGATGATACTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTGCGAACTCGACTGCAGCAAAAGGAGGGAGCAAATGGACCAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCCTGAATCTGAAGAACTACCACCCTCTGAAAATAACCTCAGGGACAGGCACAGGATTTGAAATATTGTGCCAAGGTTTTAATTGGGAATCTCATAAATCTGAAAGATGGTACATGGAGCTCAAAGATAAAGCTGCTGAATTGTCTTCACTAGGTTTCACTGTGATTTGGTTACCACCCCCGACAGATTCTGTGTCCCCTGAAGGGTACATGCCAACGGATTTGTATAATCTGAACTCCAGTGCATTTGTATCAGGTCTCAGTTATGCTCCATTCGAGTCATCGTCACAGAAATACTTGACGGACAATGGGAGTGCCTTTATGACCAAGGTGGGTATTTCATTATCAATGAATAAATTCGTCCATGATGCTCACAGGTGTTCTTCAAAGATCAATGATGCCTTGAGCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

236

Amino Acids

26.32

Weight (kDa)

5.42

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	10 - 59	1.6e-16	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	93, 647
AcuI	CTGAAG	3 cut(s)	222, 323, 513
AfaI	GTAC	2 cut(s)	404, 500
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	133, 353, 678
AluBI	AGCT	2 cut(s)	412, 425
AluI	AGCT	2 cut(s)	412, 425
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	482
ApeKI	GCWGC	3 cut(s)	101, 160, 425
ApoI	RAATTY	2 cut(s)	93, 647
Asp700I	GAANNNNTTC	1 cut(s)	647
AspS9I	GGNCC	2 cut(s)	182, 291
AvaII	GGWCC	2 cut(s)	182, 291
AxyI	CCTNAGG	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	113, 172, 412
BccI	CCATC	2 cut(s)	81, 393
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	102, 161, 426
BlsI	GCNGC	3 cut(s)	103, 162, 427
Bme18I	GGWCC	2 cut(s)	182, 291
BmgT120I	GGNCC	2 cut(s)	182, 291
BmiI	GGNNCC	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	649, 679
BmuI	ACTGGG	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	514
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	364, 618
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	2 cut(s)	62, 531
Bse21I	CCTNAGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	364, 618
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	345, 565
BseNI	ACTGG	2 cut(s)	62, 531
BseXI	GCAGC	3 cut(s)	113, 172, 412
BsgI	GTGCAG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	414
BslFI	GGGAC	2 cut(s)	349, 472
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	349, 472
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	40, 193, 681
BspACI	CCGC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	344, 564
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	162
BspPI	GGATC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	62, 531
BssECI	CCNNGG	2 cut(s)	364, 618
BssMI	GATC	3 cut(s)	40, 193, 681
BssT1I	CCWWGG	2 cut(s)	364, 618
Bst4CI	ACNGT	2 cut(s)	124, 454
BstDEI	CTNAG	2 cut(s)	331, 551
BstEII	GGTNACC	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	3 cut(s)	43, 196, 684
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	3 cut(s)	40, 193, 681
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	113, 172, 412
BstV2I	GAAGAC	1 cut(s)	429
Bsu36I	CCTNAGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	55, 450, 538
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	182, 291
Csp6I	GTAC	2 cut(s)	403, 499
CviAII	CATG	4 cut(s)	44, 406, 502, 656
CviJI	RGCY	4 cut(s)	104, 143, 412, 425
CviKI_1	RGCY	4 cut(s)	104, 143, 412, 425
CviQI	GTAC	2 cut(s)	403, 499
DdeI	CTNAG	2 cut(s)	331, 551
DpnI	GATC	3 cut(s)	42, 195, 683
DpnII	GATC	3 cut(s)	40, 193, 681
EciI	GGCGGA	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	364, 618
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	182, 291
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	3 cut(s)	222, 323, 513
Eco81I	CCTNAGG	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	291
EcoO65I	GGTNACC	1 cut(s)	462
EcoT14I	CCWWGG	2 cut(s)	364, 618
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	364, 618
FaeI	CATG	4 cut(s)	47, 409, 505, 659
FaiI	YATR	9 cut(s)	45, 264, 387, 407, 503, 519, 558, 614, 657
FaqI	GGGAC	2 cut(s)	349, 472
FatI	CATG	4 cut(s)	43, 405, 501, 655
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	102, 161, 426
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	3 cut(s)	102, 161, 426
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	3 cut(s)	102, 161, 426
GsuI	CTGGAG	1 cut(s)	514
Hin1II	CATG	4 cut(s)	47, 409, 505, 659
HinfI	GANTC	5 cut(s)	4, 298, 380, 479, 569
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	202, 303, 321, 394, 525
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	197, 488
HpyCH4III	ACNGT	2 cut(s)	124, 454
HpyCH4V	TGCA	4 cut(s)	69, 160, 230, 536
HpyF3I	CTNAG	2 cut(s)	331, 551
Hsp92II	CATG	4 cut(s)	47, 409, 505, 659
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	40, 193, 681
LmnI	GCTCC	3 cut(s)	173, 409, 565
Lsp1109I	GCAGC	3 cut(s)	113, 172, 412
LweI	GCATC	2 cut(s)	649, 679
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	462, 576
MalI	GATC	3 cut(s)	42, 195, 683
MboI	GATC	3 cut(s)	40, 193, 681
MboII	GAAGA	4 cut(s)	245, 316, 429, 666
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	4 cut(s)	93, 373, 431, 647
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	7 cut(s)	4, 15, 163, 184, 214, 327, 340
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	1 cut(s)	372
NdeII	GATC	3 cut(s)	40, 193, 681
NlaIII	CATG	4 cut(s)	47, 409, 505, 659
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	576
NspI	RCATGY	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	4 cut(s)	4, 298, 380, 479
PkrI	GCNGC	3 cut(s)	103, 162, 427
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	291
PspEI	GGTNACC	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	182, 291
PspPPI	RGGWCCY	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	404, 500
RsaNI	GTAC	2 cut(s)	403, 499
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	102, 161, 426
Sau3AI	GATC	3 cut(s)	40, 193, 681
Sau96I	GGNCC	2 cut(s)	182, 291
SchI	GAGTC	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	649, 679
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	182, 291
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	4 cut(s)	93, 373, 431, 647
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	364, 618
TaaI	ACNGT	2 cut(s)	124, 454
TaqI	TCGA	2 cut(s)	154, 567
TasI	AATT	4 cut(s)	93, 373, 431, 647
TfiI	GAWTC	4 cut(s)	4, 298, 380, 479
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	3 cut(s)	62, 457, 538
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	3 cut(s)	101, 160, 425
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	5 cut(s)	17, 258, 297, 621, 656
TspGWI	ACGGA	2 cut(s)	524, 608
TspRI	CASTG	3 cut(s)	62, 457, 538
VpaK11BI	GGWCC	2 cut(s)	182, 291
XapI	RAATTY	2 cut(s)	93, 647
XceI	RCATGY	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.