Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

14000948 .. 14004425

Gene Structure 3478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG089200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGGTTGAACCACACTCTTCTTTACCACCCCCAGAATCCAGTAATGGCAGCAAAAACTGGAAAGACAAAGATGATGAGACTTCTACGAGATGATAATGCAAAGGATCAAGATACTCAAATACAGGCAGAGAGAATTGATATGGACACACATTCTCAGATTATATCAAGAAAGCGGAAACAAGGTTGTCAAAGAAGATCAAGAAGGTTGAAAGAAGCCACAGCTCAGAGAAAGGGAAAGCACAGCAACAGAACTCCACCGCAGCTCCGCCGCCATGGGACGCGTCCGCACCAAGACCGTGAAGAAGTCCTCTTGGCAGTTGATCAAGCGGTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGGTCCTGGAGGATCTGCAAAAATCCCGTCGAAGCGCCTCCGCAACAAGATCGTCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCACGGCATCTCCCTCAAGCTCCAGGAGGAGGAGAACGAGGGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACCGACGAGATCGTCGTCGACAAGGAGACCCTCGACATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

228

Amino Acids

25.95

Weight (kDa)

9.99

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	130 - 212	3.9e-30	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	2 cut(s)	283, 341
AclWI	GGATC	4 cut(s)	114, 391, 629, 642
AfaI	GTAC	3 cut(s)	333, 668, 683
AfiI	CCNNNNNNNGG	2 cut(s)	473, 499
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	10, 211
AjnI	CCWGG	3 cut(s)	376, 492, 674
AluBI	AGCT	3 cut(s)	224, 265, 490
AluI	AGCT	3 cut(s)	224, 265, 490
Alw26I	GTCTC	2 cut(s)	73, 569
AlwI	GGATC	4 cut(s)	114, 391, 629, 642
AoxI	GGCC	3 cut(s)	463, 511, 670
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	2 cut(s)	50, 262
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspLEI	GCGC	4 cut(s)	343, 408, 453, 658
AspS9I	GGNCC	5 cut(s)	374, 463, 464, 511, 671
AsuC2I	CCSGG	1 cut(s)	618
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	634
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	62, 274
BccI	CCATC	1 cut(s)	447
BceAI	ACGGC	2 cut(s)	490, 685
BcgI	CGANNNNNNTGC	4 cut(s)	332, 366, 403, 437
BciT130I	CCWGG	3 cut(s)	378, 494, 676
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	618
BcoDI	GTCTC	2 cut(s)	73, 569
BfaI	CTAG	1 cut(s)	685
BfoI	RGCGCY	1 cut(s)	409
BisI	GCNGC	4 cut(s)	51, 263, 271, 514
BlsI	GCNGC	4 cut(s)	52, 264, 272, 515
Bme1390I	CCNGG	4 cut(s)	378, 494, 618, 676
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	5 cut(s)	374, 463, 464, 511, 671
BmiI	GGNNCC	4 cut(s)	465, 466, 636, 673
BmrFI	CCNGG	4 cut(s)	378, 494, 618, 676
BmsI	GCATC	2 cut(s)	462, 486
BpiI	GAAGAC	1 cut(s)	554
BpmI	CTGGAG	3 cut(s)	399, 476, 632
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	618
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	274, 472, 674
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 499
Bse1I	ACTGG	2 cut(s)	41, 64
BseBI	CCWGG	3 cut(s)	378, 494, 676
BseDI	CCNNGG	3 cut(s)	274, 472, 674
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	473, 499
BseMII	CTCAG	2 cut(s)	170, 239
BseNI	ACTGG	2 cut(s)	41, 64
BseRI	GAGGAG	2 cut(s)	512, 515
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	62, 274
Bsh1236I	CGCG	2 cut(s)	283, 341
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	3 cut(s)	465, 513, 672
BsiEI	CGRYCG	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	618
BslFI	GGGAC	2 cut(s)	292, 512
BslI	CCNNNNNNNGG	2 cut(s)	473, 499
BsmAI	GTCTC	2 cut(s)	73, 569
BsmFI	GGGAC	2 cut(s)	292, 512
BsnI	GGCC	3 cut(s)	465, 513, 672
Bso31I	GGTCTC	1 cut(s)	569
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
Bsp19I	CCATGG	1 cut(s)	274
BspANI	GGCC	3 cut(s)	465, 513, 672
BspCNI	CTCAG	2 cut(s)	169, 238
BspFNI	CGCG	2 cut(s)	283, 341
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	4 cut(s)	465, 466, 636, 673
BspPI	GGATC	4 cut(s)	114, 391, 629, 642
BspTNI	GGTCTC	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	41, 64
BssECI	CCNNGG	3 cut(s)	274, 472, 674
BssMI	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	3 cut(s)	378, 494, 676
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	156, 225
BstDSI	CCRYGG	2 cut(s)	274, 472
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	2 cut(s)	283, 341
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	4 cut(s)	343, 408, 453, 658
BstKTI	GATC	9 cut(s)	109, 200, 325, 386, 423, 561, 637, 646, 663
BstMAI	GTCTC	2 cut(s)	73, 569
BstMBI	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
BstMCI	CGRYCG	1 cut(s)	663
BstNI	CCWGG	3 cut(s)	378, 494, 676
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	4 cut(s)	376, 492, 616, 674
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	2 cut(s)	283, 341
BstV1I	GCAGC	2 cut(s)	62, 274
BstV2I	GAAGAC	1 cut(s)	554
BstX2I	RGATCY	2 cut(s)	383, 634
BstYI	RGATCY	2 cut(s)	383, 634
BsuRI	GGCC	3 cut(s)	465, 513, 672
BtgI	CCRYGG	2 cut(s)	274, 472
BtsCI	GGATG	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	591
CciI	TCATGA	1 cut(s)	444
CfoI	GCGC	4 cut(s)	343, 408, 453, 658
Cfr13I	GGNCC	5 cut(s)	374, 463, 464, 511, 671
CseI	GACGC	2 cut(s)	272, 289
Csp6I	GTAC	3 cut(s)	332, 667, 682
CviAII	CATG	7 cut(s)	275, 344, 445, 517, 544, 586, 604
CviJI	RGCY	7 cut(s)	218, 224, 265, 465, 490, 513, 672
CviKI_1	RGCY	7 cut(s)	218, 224, 265, 465, 490, 513, 672
CviQI	GTAC	3 cut(s)	332, 667, 682
DdeI	CTNAG	2 cut(s)	156, 225
DpnI	GATC	9 cut(s)	108, 199, 324, 385, 422, 560, 636, 645, 662
DpnII	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	3 cut(s)	257, 529, 623
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	374
EcoO109I	RGGNCCY	3 cut(s)	374, 463, 464
EcoRII	CCWGG	3 cut(s)	376, 492, 674
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	7 cut(s)	278, 347, 448, 520, 547, 589, 607
FaiI	YATR	9 cut(s)	143, 164, 276, 345, 446, 518, 545, 587, 605
FaqI	GGGAC	2 cut(s)	292, 512
FatI	CATG	7 cut(s)	274, 343, 444, 516, 543, 585, 603
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	51, 263, 271, 514
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	4 cut(s)	51, 263, 271, 514
FspBI	CTAG	1 cut(s)	685
GlaI	GCGC	4 cut(s)	342, 407, 452, 657
GluI	GCNGC	4 cut(s)	51, 263, 271, 514
GsuI	CTGGAG	3 cut(s)	399, 476, 632
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	465, 513, 672
HapII	CCGG	1 cut(s)	618
HgaI	GACGC	2 cut(s)	272, 289
HhaI	GCGC	4 cut(s)	343, 408, 453, 658
Hin1II	CATG	7 cut(s)	278, 347, 448, 520, 547, 589, 607
Hin6I	GCGC	4 cut(s)	341, 406, 451, 656
HinP1I	GCGC	4 cut(s)	341, 406, 451, 656
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	4 cut(s)	37, 429, 536, 621
HpaII	CCGG	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	472, 568
Hpy188I	TCNGA	4 cut(s)	159, 228, 428, 643
Hpy188III	TCNNGA	8 cut(s)	110, 168, 201, 433, 445, 457, 625, 649
Hpy8I	GTNNAC	2 cut(s)	472, 568
Hpy99I	CGWCG	6 cut(s)	403, 428, 536, 557, 566, 569
HpyAV	CCTTC	4 cut(s)	198, 365, 454, 622
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	101, 389
HpyF3I	CTNAG	2 cut(s)	156, 225
Hsp92II	CATG	7 cut(s)	278, 347, 448, 520, 547, 589, 607
HspAI	GCGC	4 cut(s)	341, 406, 451, 656
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
LmnI	GCTCC	2 cut(s)	270, 495
Lsp1109I	GCAGC	2 cut(s)	62, 274
LweI	GCATC	2 cut(s)	462, 486
MaeI	CTAG	1 cut(s)	685
MalI	GATC	9 cut(s)	108, 199, 324, 385, 422, 560, 636, 645, 662
MboI	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
MboII	GAAGA	4 cut(s)	11, 207, 314, 559
MflI	RGATCY	2 cut(s)	383, 634
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	1 cut(s)	135
MluI	ACGCGT	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	545, 630
MmeI	TCCRAC	1 cut(s)	406
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	4 cut(s)	378, 494, 618, 676
MvaI	CCWGG	3 cut(s)	378, 494, 676
MvnI	CGCG	2 cut(s)	283, 341
NciI	CCSGG	1 cut(s)	618
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
NlaIII	CATG	7 cut(s)	278, 347, 448, 520, 547, 589, 607
NlaIV	GGNNCC	4 cut(s)	465, 466, 636, 673
NmeAIII	GCCGAG	1 cut(s)	579
NspI	RCATGY	1 cut(s)	589
PagI	TCATGA	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	37, 429
PflFI	GACNNNGTC	1 cut(s)	524
PfoI	TCCNGGA	3 cut(s)	376, 492, 616
PkrI	GCNGC	4 cut(s)	52, 264, 272, 515
Ple19I	CGATCG	1 cut(s)	663
PleI	GAGTC	2 cut(s)	544, 629
PpsI	GAGTC	2 cut(s)	544, 629
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	376, 492, 674
PspGI	CCWGG	3 cut(s)	376, 492, 674
PspN4I	GGNNCC	4 cut(s)	465, 466, 636, 673
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	5 cut(s)	374, 463, 464, 511, 671
PspPPI	RGGWCCY	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	383, 634
PsyI	GACNNNGTC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	663
RsaI	GTAC	3 cut(s)	333, 668, 683
RsaNI	GTAC	3 cut(s)	332, 667, 682
SalI	GTCGAC	1 cut(s)	566
SatI	GCNGC	4 cut(s)	51, 263, 271, 514
Sau3AI	GATC	9 cut(s)	106, 197, 322, 383, 420, 558, 634, 643, 660
Sau96I	GGNCC	5 cut(s)	374, 463, 464, 511, 671
SchI	GAGTC	2 cut(s)	545, 630
ScrFI	CCNGG	4 cut(s)	378, 494, 618, 676
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	9 cut(s)	8, 187, 209, 226, 267, 376, 492, 633, 683
SfaNI	GCATC	2 cut(s)	462, 486
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	1 cut(s)	135
SspMI	CTAG	1 cut(s)	685
StyD4I	CCNGG	4 cut(s)	376, 492, 616, 674
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	5 cut(s)	352, 401, 434, 567, 582
TaqII	GACCGA	1 cut(s)	566
TasI	AATT	1 cut(s)	135
TauI	GCSGC	2 cut(s)	273, 516
TfiI	GAWTC	2 cut(s)	37, 429
TscAI	CASTG	1 cut(s)	598
TseI	GCWGC	2 cut(s)	50, 262
TspDTI	ATGAA	2 cut(s)	461, 560
TspRI	CASTG	1 cut(s)	598
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	374
XceI	RCATGY	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.