Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Forward (+)

50292890 .. 50305886

Gene Structure 12997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGAGTTTGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCTGCCAAAAACAGTAGTTCTCAAGGATAAGGCTTTGCGAACCCGACTGCAGCTAAGTGAAAGTACATGGTTGAAATGTAAGGGCAATGACTTCTACATTCCCCTTTCAAGCACAAATAACTCACCTGCTGCAACAAAGGAGGATCAATCTGAAGGTGCTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCTTGGTGAGTGGCATTTCCTCTGAGAAGAGTCGAAAGACAAAATCCAAAGAAGCACAAGAAAGCATTCTTCAAGAAATAGAAAAATTGGCTGTTGAAGCCTATAGTATCTTCAGAAGCACTGTTCCCACATTTATTAAGCTATTTCAGAATCTGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

152

Amino Acids

16.94

Weight (kDa)

5.34

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	2 - 39	2.1e-07	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	225, 391
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	127, 162, 368, 392
AluBI	AGCT	2 cut(s)	106, 436
AluI	AGCT	2 cut(s)	106, 436
AlwI	GGATC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	448
ApeKI	GCWGC	3 cut(s)	44, 103, 182
ApoI	RAATTY	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	168, 313
AvaII	GGWCC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	56, 115, 169
BccI	CCATC	1 cut(s)	24
BfmI	CTRYAG	2 cut(s)	101, 397
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	3 cut(s)	45, 104, 183
BlsI	GCNGC	3 cut(s)	46, 105, 184
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmsI	GCATC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	56, 115, 169
BsgI	GTGCAG	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	67, 418
Bst6I	CTCTTC	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	107, 318
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	101, 397
BstV1I	GCAGC	3 cut(s)	56, 115, 169
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	1 cut(s)	120
CviJI	RGCY	6 cut(s)	47, 86, 106, 386, 395, 436
CviKI_1	RGCY	6 cut(s)	47, 86, 106, 386, 395, 436
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	107, 318
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	225, 391
EcoO109I	RGGNCCY	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	1 cut(s)	123
FaiI	YATR	3 cut(s)	121, 267, 399
FatI	CATG	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	45, 104, 183
Fsp4HI	GCNGC	3 cut(s)	45, 104, 183
GluI	GCNGC	3 cut(s)	45, 104, 183
Hin1II	CATG	1 cut(s)	123
HinfI	GANTC	2 cut(s)	325, 445
HphI	GGTGA	2 cut(s)	168, 313
Hpy188I	TCNGA	5 cut(s)	205, 319, 410, 444, 450
Hpy188III	TCNNGA	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	67, 418
HpyCH4V	TGCA	4 cut(s)	12, 103, 185, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	107, 318
Hsp92II	CATG	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	2 cut(s)	54, 192
Lsp1109I	GCAGC	3 cut(s)	56, 115, 169
LweI	GCATC	1 cut(s)	10
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	248, 334, 356, 397
MluCI	AATT	3 cut(s)	36, 380, 454
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	187, 217, 325
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	123
PaqCI	CACCTGC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	46, 105, 184
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PpuMI	RGGWCCY	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	294
PspPPI	RGGWCCY	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	3 cut(s)	45, 104, 183
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	334
SetI	ASST	5 cut(s)	108, 181, 211, 299, 438
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	2 cut(s)	101, 397
SgeI	CNNG	9 cut(s)	53, 88, 108, 132, 174, 191, 310, 365, 380
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	36, 380, 454
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	67, 418
TaqI	TCGA	1 cut(s)	328
TasI	AATT	3 cut(s)	36, 380, 454
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	3 cut(s)	44, 103, 182
TspDTI	ATGAA	2 cut(s)	261, 300
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.