Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000937

Physical Location & Seq

Genomic Coordinates Reverse (-)

82460413 .. 82465064

Gene Structure 4652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG480700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATAGGTTGGAATTGCAATGTTACTGCTAAACATGCGTTGATCAAGTACGGAGCTTTGGGGAAGTTATCCAACTTATTTTACAAGGCAGAATCATCAAACTCCCAAACTAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACGTCGTCTCTAGAAGGGTTCTACAAAGAACTCCCTATAGCAAAAAAAATTGCTGTAGTGAATTTAGTAACTGTTTCTGTCAGGAAATGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGACTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTGGCAAAGATGATGCTAAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAAGGCTTTGCGAACTCGACTGCAGCTAAGTGAAAGTACATGGTTGAAATGTAAGGGCAATGACTTCTACATCCCCCTTTCAAGCGCAAATAACTCACCTGCTGCAGCAAAGGAGGATCAATCTGAAGGTGTTGATGTAGATGAGGGAAGTGCAGAAGAAATAGATGAAAGTTCTTTTACTGAATATGCCAATGGAATAATAAATGAAATAAGGACCCTGGTGAGTGGCATTTCCTCTGAGAAGAGTCGAAAGACAAAATCCAAAGAATTACAAGAAAGCATTCTTCGAGAAATAGAAAAATTGGCTGCTGAAGCCTATAGTATCTTCAAAAGCACTGTTCCCACATTTACTGAGGAAGCTATTTCAGAATCTGAAGAATTACCACCCTCTGAAAATAACCTCAGGGACAGGCAAGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

269

Amino Acids

29.8

Weight (kDa)

5.27

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_N_CWD1	PF23166	64 - 141	1.1e-19	Alpha-glucan water dikinase 1 Ig-like N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000937)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69830
fragaria_vesca	FvH4_4g31910 FvH4_4g31910
malus_domestica	MD13G1078600.v1.1 MD16G1078200.v1.1
prunus_persica	Prupe.1G268300_v2.0.a1 Prupe.1G268300_v2.0.a1
pyrus_communis	pycom13g06820 pycom16g06770
rosa_chinensis	RchiOBHm_Chr1g0315221 RchiOBHm_Chr1g0339091 RchiOBHm_Chr4g0440561 RchiOBHm_Chr5g0021421 RchiOBHm_Chr6g0272311
rosa_laevigata	RLG00000006168 RLG00000015039 RLG00000019642 RLG00000030692
rosa_multiflora	Rmu_co8071990.1_g000001 Rmu_sc0000829.1_g000011 Rmu_sc0002387.1_g000011 Rmu_sc0011312.1_g000002
rosa_roxburghii	Rroxscaffold_4G00298760 Rroxscaffold_5G00381380 Rroxscaffold_6G00426500 Rroxscaffold_7G00169140 Rroxscaffold_7G00214180
rosa_rugosa	Rorug01G0004200 Rorug04G0326700 Rorug05G0356300 Rorug05G0477400 Rorug05G0527600 Rorug07G0284000
rosa_samantha	Rh1AG270700 Rh1AG270800 Rh1AG346400 Rh1BG260100 Rh1CG254500 Rh2AG416800 Rh2CG403000 Rh3DG074600 Rh3DG292400 Rh4AG190200 Rh4AG246600 Rh4AG378400 Rh4BG035500 Rh4BG391100 Rh4CG405800 Rh4DG085900 Rh4DG385000 Rh5AG156300 Rh5AG268600 Rh5AG480700 Rh5BG155700 Rh5CG169500 Rh6AG024000 Rh6BG089200 Rh6DG025600 Rh7CG251800
rosa_wichuraiana	Rw1G024120 Rw1G030800 Rw4G032400 Rw4G032500 Rw7G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	211, 342
AcuI	CTGAAG	3 cut(s)	531, 717, 780
AfaI	GTAC	2 cut(s)	50, 424
AgsI	TTSAA	4 cut(s)	382, 433, 468, 715
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	4 cut(s)	56, 251, 412, 746
AluI	AGCT	4 cut(s)	56, 251, 412, 746
Alw26I	GTCTC	2 cut(s)	162, 239
AlwI	GGATC	1 cut(s)	510
AlwNI	CAGNNNCTG	1 cut(s)	758
ApeKI	GCWGC	5 cut(s)	350, 409, 488, 491, 692
ApoI	RAATTY	2 cut(s)	211, 342
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	474, 619
AvaII	GGWCC	1 cut(s)	600
AxyI	CCTNAGG	1 cut(s)	788
BbvI	GCAGC	5 cut(s)	362, 421, 475, 503, 679
BccI	CCATC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	605
BclI	TGATCA	2 cut(s)	42, 286
BcoDI	GTCTC	2 cut(s)	162, 239
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	5 cut(s)	186, 204, 407, 489, 703
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	5 cut(s)	351, 410, 489, 492, 693
BlsI	GCNGC	5 cut(s)	352, 411, 490, 493, 694
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	1 cut(s)	605
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	316
BmuI	ACTGGG	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	603
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	788
Bse3DI	GCAATG	2 cut(s)	25, 451
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	358, 456
BseMI	GCAATG	2 cut(s)	25, 451
BseMII	CTCAG	4 cut(s)	234, 615, 729, 802
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	5 cut(s)	362, 421, 475, 503, 679
BsgI	GTGCAG	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	806
BsmAI	GTCTC	2 cut(s)	162, 239
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	806
BsmI	GAATGC	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	42, 286, 502
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	4 cut(s)	235, 616, 730, 801
BspLI	GGNNCC	1 cut(s)	602
BspMAI	CTGCAG	2 cut(s)	411, 493
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	510
BsrDI	GCAATG	2 cut(s)	25, 451
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	3 cut(s)	42, 286, 502
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	223, 373, 724
Bst6I	CTCTTC	1 cut(s)	623
BstDEI	CTNAG	6 cut(s)	243, 252, 413, 624, 738, 788
BstF5I	GGATG	2 cut(s)	358, 456
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	3 cut(s)	45, 289, 505
BstMAI	GTCTC	2 cut(s)	162, 239
BstMBI	GATC	3 cut(s)	42, 286, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 698
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	5 cut(s)	186, 204, 407, 489, 703
BstV1I	GCAGC	5 cut(s)	362, 421, 475, 503, 679
Bsu36I	CCTNAGG	1 cut(s)	788
BtsCI	GGATG	2 cut(s)	358, 456
BtsIMutI	CAGTG	2 cut(s)	304, 720
BveI	ACCTGC	1 cut(s)	493
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	49, 423
CviAII	CATG	3 cut(s)	35, 290, 426
CviJI	RGCY	8 cut(s)	56, 251, 353, 392, 412, 692, 701, 746
CviKI_1	RGCY	8 cut(s)	56, 251, 353, 392, 412, 692, 701, 746
CviQI	GTAC	2 cut(s)	49, 423
DdeI	CTNAG	6 cut(s)	243, 252, 413, 624, 738, 788
DpnI	GATC	3 cut(s)	44, 288, 504
DpnII	GATC	3 cut(s)	42, 286, 502
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
EciI	GGCGGA	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	3 cut(s)	531, 717, 780
Eco81I	CCTNAGG	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	3 cut(s)	38, 293, 429
FaiI	YATR	7 cut(s)	36, 188, 265, 291, 427, 573, 705
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	3 cut(s)	34, 289, 425
FbaI	TGATCA	2 cut(s)	42, 286
Fnu4HI	GCNGC	5 cut(s)	351, 410, 489, 492, 693
FokI	GGATG	2 cut(s)	345, 443
Fsp4HI	GCNGC	5 cut(s)	351, 410, 489, 492, 693
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	5 cut(s)	351, 410, 489, 492, 693
HhaI	GCGC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	38, 293, 429
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	5 cut(s)	92, 128, 256, 631, 755
HphI	GGTGA	2 cut(s)	474, 619
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	5 cut(s)	511, 625, 754, 760, 778
Hpy188III	TCNNGA	4 cut(s)	132, 161, 232, 674
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	158, 506
HpyCH4III	ACNGT	3 cut(s)	223, 373, 724
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	18, 409, 491, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 698
HpyF3I	CTNAG	6 cut(s)	243, 252, 413, 624, 738, 788
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	38, 293, 429
HspAI	GCGC	1 cut(s)	471
Ksp22I	TGATCA	2 cut(s)	42, 286
Kzo9I	GATC	3 cut(s)	42, 286, 502
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	5 cut(s)	362, 421, 475, 503, 679
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	22, 217
MalI	GATC	3 cut(s)	44, 288, 504
MboI	GATC	3 cut(s)	42, 286, 502
MboII	GAAGA	6 cut(s)	251, 554, 640, 662, 703, 773
MluCI	AATT	7 cut(s)	13, 198, 211, 342, 653, 686, 764
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	128, 139, 493, 523, 631, 733, 784, 797
MroXI	GAANNNNTTC	1 cut(s)	666
MspR9I	CCNGG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	35, 698
NdeII	GATC	3 cut(s)	42, 286, 502
NlaIII	CATG	3 cut(s)	38, 293, 429
NlaIV	GGNNCC	1 cut(s)	602
NspI	RCATGY	1 cut(s)	38
PaqCI	CACCTGC	1 cut(s)	493
PctI	GAATGC	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	4 cut(s)	92, 128, 256, 755
PkrI	GCNGC	5 cut(s)	352, 411, 490, 493, 694
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
PpuMI	RGGWCCY	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	600
PspPPI	RGGWCCY	1 cut(s)	600
PstI	CTGCAG	2 cut(s)	411, 493
PstNI	CAGNNNCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	50, 424
RsaNI	GTAC	2 cut(s)	49, 423
SatI	GCNGC	5 cut(s)	351, 410, 489, 492, 693
Sau3AI	GATC	3 cut(s)	42, 286, 502
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	1 cut(s)	605
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	5 cut(s)	186, 204, 407, 489, 703
SinI	GGWCC	1 cut(s)	600
Sse9I	AATT	7 cut(s)	13, 198, 211, 342, 653, 686, 764
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	3 cut(s)	223, 373, 724
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	403, 634, 673
TasI	AATT	7 cut(s)	13, 198, 211, 342, 653, 686, 764
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	4 cut(s)	92, 128, 256, 755
TscAI	CASTG	2 cut(s)	311, 727
TseI	GCWGC	5 cut(s)	350, 409, 488, 491, 692
TspDTI	ATGAA	3 cut(s)	141, 567, 606
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	311, 727
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	2 cut(s)	211, 342
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.